NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PRSSGFe2_Sequence0000001033

Scaffold PRSSGFe2_Sequence0000001033


Overview

Basic Information
Taxon OID2162886008 Open in IMG/M
Scaffold IDPRSSGFe2_Sequence0000001033 Open in IMG/M
Source Dataset NameSoil microbial communities from Puerto Rico rain forest, that decompose switchgrass - Feedstock-adapted consortia SG + Fe
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12852
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Soil → Soil Microbial Communities From Puerto Rico Rain Forest, That Decompose Switchgrass

Source Dataset Sampling Location
Location NameLuquillo LTER tropical forest, Puerto Rico
CoordinatesLat. (o)18.3724Long. (o)-65.7166Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088999Metagenome / Metatranscriptome109Y
F096286Metagenome105N

Sequences

Protein IDFamilyRBSSequence
PRSSGFe2_0033.00001310F096286AGGTGGVNRRRVKTVRLKHEHSALIDPSMKGKKVDHIRFSQAERSIVYVSVVFDDRTEWSIAIESFSLPTARVSHFVTIEEDPIAETGLMFLPDDSSSYPQFDQIQQPPKQRKPSKKSKK
PRSSGFe2_0033.00001350F088999GAGGMNNKLLLMLCAFLAVAVSATAQETSDKFAIFVTGVGDATPVAQSLVKKLNASKPFEVVSKNDIAKVVVLVSCSSRKQTDPFLCMYVAHFNGPAFKTFLGGGMWAATNADAVSDNFLASIAQDIVERFDSTSKENLREALQACLLMTDSKCNVPDPLQKEFDAKQLTLGQYLLKKNQ

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