| Basic Information | |
|---|---|
| Taxon OID | 2140918005 Open in IMG/M |
| Scaffold ID | contig00601 Open in IMG/M |
| Source Dataset Name | Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 965 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.0678 | Long. (o) | -145.54687 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038157 | Metagenome / Metatranscriptome | 166 | Y |
| F085735 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| ASHM485C_03755860 | F038157 | N/A | MGLDVSALSDFNNEVAGELITKMVYGGSTMEYITIKEGVKFQEPINLMEVDLVLQNGTCVSTPSGS |
| ASHM485C_03755870 | F085735 | N/A | MDRTYLGISALERGSYNETFALATNYSELLVNQFQKKNDQFLWSAISGSNPAGCASDGLVKIISGSTTGVVSAGTGDATLANLEVMLAALSSDVADRDDLTYFMSVSKFRSLISDIRTQNNFYFDPVSISNRGGILEIGMPFQNAKIVGTVGLQGSNRIVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVNVAYPEFW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |