NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OU_2_1_1_newblercontig01829

Scaffold OU_2_1_1_newblercontig01829


Overview

Basic Information
Taxon OID2124908016 Open in IMG/M
Scaffold IDOU_2_1_1_newblercontig01829 Open in IMG/M
Source Dataset NameSample 642
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLos Alamos National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → → Environmental Microbial Communities From Lanl

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y
F077140Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
OU_02395620F077140N/AIYNDLLDRAWAEAKTRGENLPPEVQKEILPTVPGQQ
OU_02395640F008327AGGAGMLPSGDSPQKARAFYEYLQGHHETESRVATWNVDWTSLAWMWGFVFVLVFALLLWVMQYRTTRQRAGPYPVDRFGGWTSEAAGPATVFFLLLTAVVVAFAVAIIVGHIVYGQKF
OU_02395650F002111AGAAGMALRPTIEAAPPFVSYSTWTEALIPAAEWPATYASLQALKGHVQEYPGCQRFDVFIRAGDGGDGDTLVHCYTTWDTPAQLEVFLERGYTFERLLADIGEGLDVRQSLVMEKVF
OU_02395660F000280AGAAGGMSSGGRRRLRPARPLFGYRDVGGGDVRHNRAALTRAWVILAILIVLYLAWTLIVYFLEPGLR
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