NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ErSWdraf_F5BXKTZ02GVGA4

Scaffold ErSWdraf_F5BXKTZ02GVGA4


Overview

Basic Information
Taxon OID2035265000 Open in IMG/M
Scaffold IDErSWdraf_F5BXKTZ02GVGA4 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Swedish Lakes - surface of Lake Erken
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterRoyal Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)556
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Swedish Lakes

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.84Long. (o)18.63Alt. (m)Depth (m)0 to 2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004840Metagenome / Metatranscriptome421Y
F013527Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
ErSWdraft_4624930F013527AGAAGGMKTFEFLTYINVEAENYDEAIDVFQFQLKYGINKDNVYVADIKDLELA
ErSWdraft_4624950F004840GGAGMYKLTCAYDSNAPHWSAEYENEFGAWENFFRFTDWGFADEYSTVNLYTPAGKCYTKIFYREGRRVVVK

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