NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F106107

Metagenome / Metatranscriptome Family F106107

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106107
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 70 residues
Representative Sequence MTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDASNISFHWTPDPFGR
Number of Associated Samples 60
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.00 %
% of genes near scaffold ends (potentially truncated) 16.00 %
% of genes from short scaffolds (< 2000 bps) 75.00 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (52.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(35.000 % of family members)
Environment Ontology (ENVO) Unclassified
(85.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(76.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 49.49%    β-sheet: 0.00%    Coil/Unstructured: 50.51%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01176eIF-1a 6.00
PF01503PRA-PH 4.00
PF02867Ribonuc_red_lgC 3.00
PF00124Photo_RC 2.00
PF13098Thioredoxin_2 2.00
PF03330DPBB_1 2.00
PF08774VRR_NUC 2.00
PF02511Thy1 1.00
PF05272VirE 1.00
PF13392HNH_3 1.00
PF02945Endonuclease_7 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 6.00
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 3.00
COG1351Thymidylate synthase ThyX, FAD-dependent familyNucleotide transport and metabolism [F] 1.00
COG5545Predicted P-loop ATPase and inactivated derivativesMobilome: prophages, transposons [X] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.00 %
UnclassifiedrootN/A38.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000265|LP_A_09_P04_10DRAFT_1005134Not Available3303Open in IMG/M
3300001450|JGI24006J15134_10018148All Organisms → cellular organisms → Bacteria3284Open in IMG/M
3300001450|JGI24006J15134_10023453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus2800Open in IMG/M
3300001450|JGI24006J15134_10030523All Organisms → Viruses → Predicted Viral2368Open in IMG/M
3300001450|JGI24006J15134_10094357All Organisms → cellular organisms → Bacteria1087Open in IMG/M
3300001450|JGI24006J15134_10219505Not Available566Open in IMG/M
3300001450|JGI24006J15134_10228348Not Available548Open in IMG/M
3300001460|JGI24003J15210_10005970Not Available5153Open in IMG/M
3300001460|JGI24003J15210_10007437Not Available4577Open in IMG/M
3300001460|JGI24003J15210_10043192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus1547Open in IMG/M
3300001460|JGI24003J15210_10048417All Organisms → cellular organisms → Bacteria1431Open in IMG/M
3300001963|GOS2229_1027548All Organisms → Viruses → Predicted Viral1965Open in IMG/M
3300003580|JGI26260J51721_1055088Not Available612Open in IMG/M
3300003937|Ga0063391_1001157All Organisms → cellular organisms → Bacteria24353Open in IMG/M
3300004448|Ga0065861_1083628All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300004448|Ga0065861_1083629All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300004448|Ga0065861_1095075All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300004460|Ga0066222_1046076Not Available2781Open in IMG/M
3300005239|Ga0073579_1170095Not Available21580Open in IMG/M
3300006752|Ga0098048_1154202Not Available684Open in IMG/M
3300006793|Ga0098055_1317494All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300006921|Ga0098060_1003690Not Available5556Open in IMG/M
3300006921|Ga0098060_1050507All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300006921|Ga0098060_1160579Not Available621Open in IMG/M
3300006925|Ga0098050_1069839All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300007345|Ga0070752_1205532Not Available783Open in IMG/M
3300007552|Ga0102818_1104146All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300007555|Ga0102817_1042083All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300007863|Ga0105744_1035889All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300007956|Ga0105741_1193864Not Available500Open in IMG/M
3300008999|Ga0102816_1283670Not Available525Open in IMG/M
3300009079|Ga0102814_10216443Not Available1044Open in IMG/M
3300009529|Ga0114919_10213863All Organisms → Viruses → Predicted Viral1370Open in IMG/M
3300009529|Ga0114919_11010722Not Available559Open in IMG/M
3300010150|Ga0098056_1017302All Organisms → Viruses → Predicted Viral2588Open in IMG/M
3300010150|Ga0098056_1270546Not Available562Open in IMG/M
3300017708|Ga0181369_1062423Not Available816Open in IMG/M
3300017708|Ga0181369_1126453All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300017724|Ga0181388_1174607All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300017725|Ga0181398_1000040Not Available34051Open in IMG/M
3300017727|Ga0181401_1124644All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300017728|Ga0181419_1002040Not Available6691Open in IMG/M
3300017732|Ga0181415_1025153All Organisms → cellular organisms → Bacteria1381Open in IMG/M
3300017738|Ga0181428_1079935All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300017742|Ga0181399_1006486Not Available3569Open in IMG/M
3300017742|Ga0181399_1156387Not Available546Open in IMG/M
3300017744|Ga0181397_1077958All Organisms → cellular organisms → Bacteria887Open in IMG/M
3300017745|Ga0181427_1021065All Organisms → cellular organisms → Bacteria1628Open in IMG/M
3300017749|Ga0181392_1109692All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300017753|Ga0181407_1000331Not Available15969Open in IMG/M
3300017760|Ga0181408_1000355All Organisms → cellular organisms → Bacteria15117Open in IMG/M
3300017764|Ga0181385_1061046Not Available1167Open in IMG/M
3300017772|Ga0181430_1073760All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300017776|Ga0181394_1177221All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300017781|Ga0181423_1154730All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300019098|Ga0188859_1012280All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300020438|Ga0211576_10345919Not Available767Open in IMG/M
(restricted) 3300024059|Ga0255040_10271683Not Available705Open in IMG/M
(restricted) 3300024062|Ga0255039_10091161All Organisms → cellular organisms → Bacteria1205Open in IMG/M
(restricted) 3300024255|Ga0233438_10007993Not Available8047Open in IMG/M
(restricted) 3300024255|Ga0233438_10069336All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus1706Open in IMG/M
(restricted) 3300024255|Ga0233438_10072555All Organisms → cellular organisms → Bacteria1654Open in IMG/M
(restricted) 3300024255|Ga0233438_10083660All Organisms → Viruses → Predicted Viral1501Open in IMG/M
(restricted) 3300024255|Ga0233438_10085534All Organisms → Viruses → Predicted Viral1478Open in IMG/M
(restricted) 3300024255|Ga0233438_10096426All Organisms → cellular organisms → Bacteria1360Open in IMG/M
(restricted) 3300024255|Ga0233438_10122943All Organisms → cellular organisms → Bacteria1149Open in IMG/M
(restricted) 3300024255|Ga0233438_10133297All Organisms → cellular organisms → Bacteria1086Open in IMG/M
(restricted) 3300024255|Ga0233438_10151795All Organisms → cellular organisms → Bacteria993Open in IMG/M
(restricted) 3300024255|Ga0233438_10177377All Organisms → cellular organisms → Bacteria892Open in IMG/M
(restricted) 3300024255|Ga0233438_10266325All Organisms → cellular organisms → Bacteria670Open in IMG/M
(restricted) 3300024255|Ga0233438_10281571Not Available644Open in IMG/M
(restricted) 3300024255|Ga0233438_10316846All Organisms → cellular organisms → Bacteria592Open in IMG/M
(restricted) 3300024255|Ga0233438_10398290Not Available502Open in IMG/M
(restricted) 3300024518|Ga0255048_10196708All Organisms → cellular organisms → Bacteria985Open in IMG/M
(restricted) 3300024520|Ga0255047_10145480All Organisms → cellular organisms → Bacteria1213Open in IMG/M
3300025071|Ga0207896_1019920All Organisms → Viruses → Predicted Viral1166Open in IMG/M
3300025099|Ga0208669_1060456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus847Open in IMG/M
3300025120|Ga0209535_1000436All Organisms → cellular organisms → Bacteria29167Open in IMG/M
3300025120|Ga0209535_1006471All Organisms → cellular organisms → Bacteria7040Open in IMG/M
3300025120|Ga0209535_1009623Not Available5529Open in IMG/M
3300025120|Ga0209535_1063967All Organisms → Viruses → Predicted Viral1483Open in IMG/M
3300025120|Ga0209535_1096177Not Available1074Open in IMG/M
3300025120|Ga0209535_1140144All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300025141|Ga0209756_1086900All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus1384Open in IMG/M
3300025168|Ga0209337_1009915Not Available6065Open in IMG/M
3300025168|Ga0209337_1046578All Organisms → Viruses → Predicted Viral2279Open in IMG/M
3300025168|Ga0209337_1060045All Organisms → Viruses → Predicted Viral1924Open in IMG/M
3300025168|Ga0209337_1187801Not Available854Open in IMG/M
3300025168|Ga0209337_1340005All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300025695|Ga0209653_1087761All Organisms → cellular organisms → Bacteria1040Open in IMG/M
3300025879|Ga0209555_10252589All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300027753|Ga0208305_10151737Not Available849Open in IMG/M
3300027757|Ga0208671_10041987All Organisms → cellular organisms → Bacteria1707Open in IMG/M
(restricted) 3300028045|Ga0233414_10538707All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300028197|Ga0257110_1002589Not Available8415Open in IMG/M
3300029448|Ga0183755_1015215Not Available2769Open in IMG/M
3300029448|Ga0183755_1056197Not Available958Open in IMG/M
3300031621|Ga0302114_10185790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus885Open in IMG/M
3300032073|Ga0315315_10027336Not Available5293Open in IMG/M
3300032073|Ga0315315_10363983All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus1346Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine35.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater19.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater17.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine6.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface2.00%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water2.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001963Marine microbial communities from Nags Head, North Carolina, USA - GS013EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300003937SPOT_150m_metagenome_yearEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007552Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571EnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007956Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2umEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300019098Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025879Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_A_09_P04_10DRAFT_100513433300000265MarineMTLSAVEQTKFRAYIANRLMREILLLIPEYIQTNAHLIEGIEDKSYASVVEEYVKDAFQRAFTQINFHSTPDPY*
JGI24006J15134_1001814853300001450MarineMTLSVIEQTNFRNYIVHRLNLEIERLIPEYIHTNGYLIHHIEDKGYESVEESYVIDVSNITFTWAPDPFGRS*
JGI24006J15134_1002345373300001450MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDASNISFHWTPNPFGR*
JGI24006J15134_1003052393300001450MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVSDTSNLEFHWTKS*
JGI24006J15134_1009435723300001450MarineMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVADASNISFHWS*
JGI24006J15134_1021950523300001450MarineMTLSAVEQSNFRAYIADRLLREIEILIPEYIHTNSYLIEDIEDKGYESVEEAYVEDASNISFHWTPDPYGKS*TPTSLR
JGI24006J15134_1022834823300001450MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDAFNIAFHWTKS*
JGI24003J15210_1000597093300001460MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYDEVEQAYVEDAFNIAFHWTKS*
JGI24003J15210_1000743793300001460MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNGYLIHHIEDKGYESVEESYVNDVSNITFTWAPDPFGRS*
JGI24003J15210_1004319233300001460MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDASNISFHWTPDPFGR*
JGI24003J15210_1004841753300001460MarineMTLSAVEQTKFRAYIANRVQYDEDFLQLLREIEILIPEYIHTNAYLIHDIEDKGCEEVEEAYVQDAFNIAFNWTPDPXGKS*
GOS2229_102754853300001963MarineMTLSAVEQSNFRAYIAHRLLLEVERLIPEYIHTNPFLIDDIEDKSYESVEEAYVQDASNISFHWS*
JGI26260J51721_105508833300003580MarineMTLSAIEQTNFRNYITHRLLLEIERLIPEYIHTNSYLIHDIEDKGYESVEESYVQDASNITFTWTPDPFGRS*
Ga0063391_1001157243300003937MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYINTNQYLIEHIEDKGYESVEESYVQDASNITFTWPPDPFGRS*
Ga0065861_108362823300004448MarineMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNAYLIGDIEDKGYDQVEEAYVADS*
Ga0065861_108362913300004448MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEDIQDKGYDSVEEAYVEDAFNIAFHWTKL*
Ga0065861_109507533300004448MarineMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPYGKS*
Ga0066222_104607613300004460MarineMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNSYLIEDIEDKGYDSVEEAYVEDASNIAFHWTP
Ga0073579_1170095223300005239MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYLYTNQYLIEDIEDKGYDTVEEAYVDDASNIKFTWPPDPYGRS*
Ga0098048_115420223300006752MarineMTLSAIEQTNFRNYITHRLLLEIERLIPEYIHTNSYLIHHIEDKGYESVEESYVQDASNITFTWTPDPFGRS*
Ga0098055_131749423300006793MarineMTLSAVEQTKFRAYIANRLMREIEILIPEYIHTNAYLIEHIQDKGYDDVEEAYVNDASNIAFHWTPDPYGRS*
Ga0098060_1003690103300006921MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNISFQWTKS*
Ga0098060_105050733300006921MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYINTNQYLIHDIEDKGYESVEESYVQDVSNIIFTWTPDPFGRS*
Ga0098060_116057933300006921MarineMTLSAVEQSNFRAYIANRLLLEIERLIPEYIHTNAYLIEDIEDKGYDEVEEAYVSDASNISFHWTES*
Ga0098050_106983933300006925MarineMTLSAVEQTNFRAYIANRLLLEIERLIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNLEFHWTPSPFNRS*
Ga0070752_120553223300007345AqueousMTLSAVEQTCFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYEAVEEAYVSDAANLSFEWTKS*
Ga0102818_110414633300007552EstuarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVDDASNIKFTWPPDPFG
Ga0102817_104208343300007555EstuarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVDDASNIKFTWPPDPFGRS*
Ga0105744_103588953300007863Estuary WaterMTLSVIEQTNFRNYIVHRLLLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVNDASNIQFTWTPDPFGRS*
Ga0105741_119386413300007956Estuary WaterMTLSVIEQTNFRNYIVHRLLLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVSDARNIQFTWTPDPFGRS*
Ga0102816_128367023300008999EstuarineMTLSVIEHTNFSNYIVHRLMLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVDDASNIKFTWPPDPFGRS*
Ga0102814_1021644323300009079EstuarineMTLSAVEQAKFRAYIANRLMREILLLIPEYIQTNAYLIEDIEDKSYESVVEEYVKDAFQGAFTQINFHSTRDPY*
Ga0114919_1021386363300009529Deep SubsurfaceMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVADAANLSFEWTKS*
Ga0114919_1101072213300009529Deep SubsurfaceMTLSAVEQTKFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDP
Ga0098056_101730263300010150MarineMTLSAIEQTNFRNYITHRLLLEIERLIPEYIHTNSYLIHHIEDKGYESVEESYVQDASNITFTWTPDPVGRS*
Ga0098056_127054623300010150MarineMTLSAVEQTKFRAYIAQRLLLEIERLIPEYIHTNAYLIEHIEDKGYESVEESYVTDASNISFHWTPDPYGRS*
Ga0181369_106242333300017708MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNISFQWTKS
Ga0181369_112645323300017708MarineMTLSAVEQTNFRAYIANRLLLEIERLIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNLEFHWTKS
Ga0181388_117460723300017724SeawaterMTLSAVEQSNFRAYIAHRLLLEIERLIPEYIHTNPFLIDDIEDKGYESVEESYVSDASNISFHWTKS
Ga0181398_1000040253300017725SeawaterMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIHDIEDKGYEEVEEAYVQDAFNIAFNWTPDPYGKS
Ga0181401_112464433300017727SeawaterMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFQWTPDPYG
Ga0181419_1002040133300017728SeawaterMTLTAVEQTKFRAYIANRLLREIEILIPEYIHTNPYLIEDIEDKGYDEVEEAYVQDAFNIAFHWTPDPYGKS
Ga0181415_102515343300017732SeawaterMTLSVIEQTNFRNYIVHRLMLEIERLIPEYINTNQYLIEHIEDKGYESVEESYVQDTSNITFTWPPDPFGRS
Ga0181428_107993533300017738SeawaterMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYESVEESYVSDASKLEFHWTPSPINRS
Ga0181399_1006486103300017742SeawaterMTLSAVEQTKFRAWLAHRLLLKIEILIPEYIHSNEMGEDIYDKGIESVMESYVTDAAKLEFHWTPSPFDKS
Ga0181399_115638713300017742SeawaterVTLTAVEQTKFRAYIANRLLREIEILIPEYIHTNPYLIEDIEDKGYDEVEEAYVQDAFNIAFHWTPDPYGKS
Ga0181397_107795843300017744SeawaterMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTKS
Ga0181427_102106533300017745SeawaterMTLSAVEQTKFRAWLAHRLLLKIQILIPEYIYSNELGEDIYDKGIESVMESYVTDASNLEFHWTPDPFEKS
Ga0181392_110969233300017749SeawaterMTLSAVEQSNFRAYIAHRLLLEVERLIPEYIHTNPFLIDDIEDKGYESVEESYVSDASNISFHWTKS
Ga0181407_1000331173300017753SeawaterMTLSVIEQTHFRNYIVHRLMLEIERLIPEYINTNQYLIEHIEDKGYESVEESYVQDASNITFTWPPDPFGRS
Ga0181408_100035523300017760SeawaterMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPFNRS
Ga0181385_106104653300017764SeawaterMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYESVEESYVSDASKLEFHWTPSPI
Ga0181430_107376043300017772SeawaterMTLSAVEQTNFRAYIAHRLLLEVERLIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNISFHWTKS
Ga0181394_117722113300017776SeawaterTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNITFHWTPDPFNRS
Ga0181423_115473013300017781SeawaterYIVHRLMLEIERLIPEYIHTNGYLIHHIEDKGYESVEESYVNDASNITFTWAPDPFGRS
Ga0188859_101228013300019098Freshwater LakeMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYESVEESYVADAANLSFQWTKS
Ga0211576_1034591933300020438MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNQYLIHHIEDKGYESVEESYVDDASNIKFTWPPDPFGRS
(restricted) Ga0255040_1027168323300024059SeawaterMTLSAVEQTKFRAYIANRLMREIEILIPEYVHTNAYLIEDIEDKGYEAVEEAYVNDASNITFHWTPNYIASYQXPXT
(restricted) Ga0255039_1009116113300024062SeawaterMTLSAVEQTKFRAYIANRLMREIEILIPEYVHTNAYLIEDIEDKSYEAVEEAYVNDASNITFHW
(restricted) Ga0233438_1000799383300024255SeawaterMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNSYLIEDIEDKGYDSVEEAYVEDASNITFHWTKS
(restricted) Ga0233438_1006933663300024255SeawaterMTLSAVEQTQFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYEAVEEAYVQDASNISFQWTPDPYGKS
(restricted) Ga0233438_1007255533300024255SeawaterMTLSAVEQTKFRAYIANRLLREIELLIPEYIHTNAYLIEHIEDKGYESVEESYVSDASNISFHWTPDPYGKS
(restricted) Ga0233438_1008366053300024255SeawaterMTLSAVEQTKFRAYIANRLMREIEILIPEYVHTNAYLIEDIEDKGYEAVEEAYVNDASNITFHWTPNYIASYQ
(restricted) Ga0233438_1008553423300024255SeawaterMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNSYLIEHIEDKGYESVEESYVSDASLISFHWTPDPFH
(restricted) Ga0233438_1009642643300024255SeawaterMTLSAVEQTKFRAYIANRLMREIEILIPEYIHTNTYLIEDIEDKGYDSVEEAYVEDASNIAFHWTKS
(restricted) Ga0233438_1012294333300024255SeawaterMTLSAVEQTKFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTKS
(restricted) Ga0233438_1013329723300024255SeawaterMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYDEVEEAYVRDASDLEFHWTKS
(restricted) Ga0233438_1015179533300024255SeawaterMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNFYLIDDIEDKGYESVEESYVSDASKLEFHWTPSPFERS
(restricted) Ga0233438_1017737723300024255SeawaterMTLSAIEQTNFRNYITHRLLLEIERLIPEYIHTNSYLIHDIEDKGYESVEESYVQDASNITFTWTPDPFGRS
(restricted) Ga0233438_1026632533300024255SeawaterQFRAYIANRLLREIEILIPEYINTNSYLIEDIEDKGYESVEESYISDASNLEFHWTKS
(restricted) Ga0233438_1028157113300024255SeawaterMTLSAVEQTQFRAYIANRLLREIEILIPEYIHTNQYLIEDIADKGYETVEEAYVQDASNISFHWS
(restricted) Ga0233438_1031684623300024255SeawaterMTLSAVEQTQFRAYIANRLLREIEILIPEYIHTNQYLIEDIEDKGYETVEEAYVQDASNISFHWS
(restricted) Ga0233438_1039829033300024255SeawaterMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVSDASLISFHWTPSPFDRS
(restricted) Ga0255048_1019670843300024518SeawaterMTLSAVEQTQFRAYIANHLLREIEILIPEYIHTNQYLIEDIADKGYETVEEAYVQDASNISFHWS
(restricted) Ga0255047_1014548053300024520SeawaterMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNSYLIDDIEDKGYEAVEEAYVNDASNITFHWTKS
Ga0207896_101992033300025071MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYDSVEEAYVEDAFNIAFHWTKS
Ga0208669_106045633300025099MarineFRAYIANRLLLEIERLIPEYIHTNAYLIEDIEDKGYDEVEEAYVSDASNISFHWTES
Ga0209535_100043693300025120MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNGYLIHHIEDKGYESVEESYVNDVSNITFTWAPDPFGRS
Ga0209535_1006471163300025120MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIDTNAYLIEDIEDKGYDIVLEAYVNDASNISFQWTPDPYGKS
Ga0209535_1009623133300025120MarineMTLSAVEQTKFRAYIANRLLREIELLIPEYIHTNAYLIEDIEDKGYESVEEEYVKDAFQRAFTQITFHSTPDPQESNS
Ga0209535_106396763300025120MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDASNISFHWTPDPFGR
Ga0209535_109617743300025120MarineMTLSAVEQTKFRAYIANRVQYDEDFLQLLREIEILIPEYIHTNAYLIHDIEDKGCEEVEEAYVQDAFNIAFNWTPDPCGKS
Ga0209535_114014413300025120MarineMTLSAVEQTNFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYISDASKLEFHWTPSPFGRSWR
Ga0209756_108690033300025141MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNFYLMEDIEDKGYETVEEAYVKDASNISFQWTADPYGKS
Ga0209337_1009915103300025168MarineMTLSVIEQTNFRNYIVHRLNLEIERLIPEYIHTNGYLIHHIEDKGYESVEESYVIDVSNITFTWAPDPFGRS
Ga0209337_1046578103300025168MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEHIEDKGYESVEESYVSDTSNLEFHWTKS
Ga0209337_106004553300025168MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDASNISFHWTPNPFGR
Ga0209337_118780123300025168MarineMTLSAVEQSNFRAYIADRLLREIEILIPEYIHTNSYLIEDIEDKGYESVEEAYVEDASNISFHWTPDPYGKS
Ga0209337_134000523300025168MarineMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDAFNIAFHWTKS
Ga0209653_108776123300025695MarineMTLSAIEQTNFRNYITHRLLLEIERLIPEYIHTNSYLIHDIEDKGYESVEESYVQDASNITFTWTPDPFGKS
Ga0209555_1025258933300025879MarineMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNSYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPYGRS
Ga0208305_1015173723300027753EstuarineMTLSAVEQAKFRAYIANRLMREILLLIPEYIQTNAYLIEDIEDKSYESVVEEYVKDAFQGAFTQINFHSTRDPY
Ga0208671_1004198783300027757EstuarineQTKFRAYIANRLMREIEILIPEYVHTNAYLIEDIEDKGYEAVEEAYVNDASNITFHWTPNYIASYQ
(restricted) Ga0233414_1053870713300028045SeawaterMTLSAVEQTNFRAYIANRLMRELEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPYGKS
Ga0257110_100258993300028197MarineMTLSAVEQTNFRAYIANRLMREIEILIPEYIHTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPYGKS
Ga0183755_101521593300029448MarineMTLSVIEQTNFRNYIVHRLMLEIERLIPEYIHTNQYLIHDIEDKGYESVEESYVDDASNIKFTWPPDPFGRS
Ga0183755_105619723300029448MarineMTLSAVEQTNFRAYIANRLMREIEILIPEYIYTNAYLIEDIEDKGYDSVEEAYVEDASNIAFHWTPDPYGRS
Ga0302114_1018579033300031621MarineSMTLSAVEQTKFRAYIANRLLREIEILIPEYIHTNAYLIDHIEDKGYESVEESYVSDTSNLEFHWTKS
Ga0315315_1002733663300032073SeawaterMTLSVIEQTNFRNYIVHRLMLEIERLIPEYINTNQYLIEHIEDKGYESVEESYVQDASNITFTWPPDPFGRS
Ga0315315_1036398363300032073SeawaterYFKMTLSAVEQTKFRAYIANRLLREIELLIPEYIHTHHHLRDDIEDKGYETVEESYVADASNISFQWTADPYGKS


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