NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F106083

Metagenome / Metatranscriptome Family F106083

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F106083
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 56 residues
Representative Sequence MENKYWLLEPRDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECEDAEV
Number of Associated Samples 82
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 46.00 %
% of genes near scaffold ends (potentially truncated) 27.00 %
% of genes from short scaffolds (< 2000 bps) 75.00 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (47.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(22.000 % of family members)
Environment Ontology (ENVO) Unclassified
(89.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(95.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.57%    β-sheet: 0.00%    Coil/Unstructured: 46.43%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00145DNA_methylase 22.00
PF12705PDDEXK_1 21.00
PF14700RPOL_N 5.00
PF08299Bac_DnaA_C 4.00
PF13155Toprim_2 2.00
PF12599DUF3768 1.00
PF13521AAA_28 1.00
PF13482RNase_H_2 1.00
PF00476DNA_pol_A 1.00
PF12236Head-tail_con 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 22.00
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 4.00
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.00 %
UnclassifiedrootN/A47.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10148603Not Available864Open in IMG/M
3300000116|DelMOSpr2010_c10069342All Organisms → cellular organisms → Bacteria1441Open in IMG/M
3300000117|DelMOWin2010_c10013419All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium4534Open in IMG/M
3300000117|DelMOWin2010_c10056311Not Available1687Open in IMG/M
3300000117|DelMOWin2010_c10108830Not Available995Open in IMG/M
3300000928|OpTDRAFT_10030166Not Available10892Open in IMG/M
3300000930|BpDRAFT_10043157Not Available563Open in IMG/M
3300001348|JGI20154J14316_10064289All Organisms → Viruses → Predicted Viral1414Open in IMG/M
3300001349|JGI20160J14292_10010690All Organisms → cellular organisms → Bacteria → Proteobacteria5920Open in IMG/M
3300001460|JGI24003J15210_10003590All Organisms → cellular organisms → Bacteria6723Open in IMG/M
3300001947|GOS2218_1002642Not Available1061Open in IMG/M
3300002930|Water_101384All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium4568Open in IMG/M
3300004097|Ga0055584_101585242All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.678Open in IMG/M
3300004448|Ga0065861_1134273Not Available659Open in IMG/M
3300006027|Ga0075462_10229975Not Available553Open in IMG/M
3300006752|Ga0098048_1034142Not Available1647Open in IMG/M
3300006793|Ga0098055_1032349All Organisms → cellular organisms → Bacteria2165Open in IMG/M
3300006793|Ga0098055_1043324All Organisms → Viruses → Predicted Viral1834Open in IMG/M
3300006803|Ga0075467_10081916All Organisms → Viruses → Predicted Viral1948Open in IMG/M
3300006803|Ga0075467_10167522All Organisms → cellular organisms → Bacteria → PVC group1247Open in IMG/M
3300006803|Ga0075467_10416905Not Available697Open in IMG/M
3300006916|Ga0070750_10165923Not Available993Open in IMG/M
3300006920|Ga0070748_1069853All Organisms → Viruses → Predicted Viral1368Open in IMG/M
3300006925|Ga0098050_1030621All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1462Open in IMG/M
3300007229|Ga0075468_10204575Not Available575Open in IMG/M
3300007344|Ga0070745_1169690All Organisms → cellular organisms → Bacteria → PVC group818Open in IMG/M
3300009071|Ga0115566_10429734Not Available757Open in IMG/M
3300009071|Ga0115566_10655984Not Available584Open in IMG/M
3300009076|Ga0115550_1085288All Organisms → cellular organisms → Bacteria → PVC group1196Open in IMG/M
3300009433|Ga0115545_1238162All Organisms → cellular organisms → Bacteria → PVC group613Open in IMG/M
3300009434|Ga0115562_1234210All Organisms → cellular organisms → Bacteria → PVC group645Open in IMG/M
3300009436|Ga0115008_11404452All Organisms → cellular organisms → Bacteria → PVC group537Open in IMG/M
3300009440|Ga0115561_1096731All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300009495|Ga0115571_1099565All Organisms → cellular organisms → Bacteria → PVC group1262Open in IMG/M
3300009495|Ga0115571_1345184Not Available588Open in IMG/M
3300009495|Ga0115571_1434056Not Available508Open in IMG/M
3300009497|Ga0115569_10110450All Organisms → Viruses → Predicted Viral1371Open in IMG/M
3300009505|Ga0115564_10330315Not Available757Open in IMG/M
3300009507|Ga0115572_10218763Not Available1096Open in IMG/M
3300009507|Ga0115572_10772988All Organisms → cellular organisms → Bacteria → PVC group518Open in IMG/M
3300011129|Ga0151672_132826Not Available823Open in IMG/M
3300012524|Ga0129331_1122844All Organisms → Viruses → Predicted Viral1849Open in IMG/M
3300013010|Ga0129327_10036494All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium2506Open in IMG/M
3300017709|Ga0181387_1000257Not Available12403Open in IMG/M
3300017710|Ga0181403_1026260All Organisms → cellular organisms → Bacteria → PVC group1233Open in IMG/M
3300017719|Ga0181390_1031332All Organisms → Viruses → Predicted Viral1662Open in IMG/M
3300017725|Ga0181398_1045881All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1061Open in IMG/M
3300017726|Ga0181381_1035863All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1106Open in IMG/M
3300017727|Ga0181401_1088290Not Available799Open in IMG/M
3300017732|Ga0181415_1055174Not Available902Open in IMG/M
3300017749|Ga0181392_1245988Not Available504Open in IMG/M
3300017753|Ga0181407_1053860All Organisms → cellular organisms → Bacteria → PVC group1049Open in IMG/M
3300017756|Ga0181382_1099692Not Available788Open in IMG/M
3300017759|Ga0181414_1001823Not Available6379Open in IMG/M
3300017762|Ga0181422_1009004All Organisms → Viruses → Predicted Viral3343Open in IMG/M
3300017762|Ga0181422_1148496Not Available719Open in IMG/M
3300017770|Ga0187217_1030044All Organisms → Viruses → Predicted Viral1926Open in IMG/M
3300017772|Ga0181430_1009340All Organisms → Viruses → Predicted Viral3416Open in IMG/M
3300017782|Ga0181380_1019427All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2540Open in IMG/M
3300017782|Ga0181380_1090142Not Available1069Open in IMG/M
3300017782|Ga0181380_1152633Not Available786Open in IMG/M
3300020166|Ga0206128_1209217Not Available742Open in IMG/M
3300020169|Ga0206127_1037900All Organisms → cellular organisms → Bacteria → PVC group2638Open in IMG/M
3300020182|Ga0206129_10094016Not Available1604Open in IMG/M
3300020347|Ga0211504_1000986Not Available13553Open in IMG/M
3300021085|Ga0206677_10003333All Organisms → cellular organisms → Bacteria13579Open in IMG/M
3300021958|Ga0222718_10032038All Organisms → Viruses → Predicted Viral3505Open in IMG/M
3300021959|Ga0222716_10404454Not Available792Open in IMG/M
3300022053|Ga0212030_1001206All Organisms → Viruses → Predicted Viral2273Open in IMG/M
3300022053|Ga0212030_1056439Not Available558Open in IMG/M
3300022061|Ga0212023_1005341All Organisms → cellular organisms → Bacteria → PVC group1532Open in IMG/M
3300022061|Ga0212023_1042149Not Available634Open in IMG/M
3300022072|Ga0196889_1005318All Organisms → Viruses → Predicted Viral2990Open in IMG/M
3300022072|Ga0196889_1008376All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium2314Open in IMG/M
3300022178|Ga0196887_1025316All Organisms → cellular organisms → Bacteria → PVC group1713Open in IMG/M
3300022183|Ga0196891_1039150Not Available878Open in IMG/M
(restricted) 3300024062|Ga0255039_10116936All Organisms → Viruses → Predicted Viral1074Open in IMG/M
3300024321|Ga0228626_1008852All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium3013Open in IMG/M
(restricted) 3300024518|Ga0255048_10193408All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium994Open in IMG/M
(restricted) 3300024520|Ga0255047_10328191Not Available773Open in IMG/M
3300025070|Ga0208667_1000741Not Available13210Open in IMG/M
3300025070|Ga0208667_1002149All Organisms → cellular organisms → Bacteria6613Open in IMG/M
3300025120|Ga0209535_1007077All Organisms → cellular organisms → Bacteria6690Open in IMG/M
3300025137|Ga0209336_10118298Not Available729Open in IMG/M
3300025508|Ga0208148_1025175All Organisms → cellular organisms → Bacteria → PVC group1648Open in IMG/M
3300025570|Ga0208660_1110442Not Available594Open in IMG/M
3300025620|Ga0209405_1086023All Organisms → cellular organisms → Bacteria → PVC group940Open in IMG/M
3300025621|Ga0209504_1004128All Organisms → cellular organisms → Bacteria8654Open in IMG/M
3300025621|Ga0209504_1073393Not Available961Open in IMG/M
3300025621|Ga0209504_1098395Not Available770Open in IMG/M
3300025640|Ga0209198_1149109All Organisms → cellular organisms → Bacteria → PVC group651Open in IMG/M
3300025699|Ga0209715_1174805Not Available697Open in IMG/M
3300025759|Ga0208899_1046639Not Available1886Open in IMG/M
3300025803|Ga0208425_1125110Not Available585Open in IMG/M
3300025806|Ga0208545_1110898Not Available703Open in IMG/M
3300025880|Ga0209534_10068279All Organisms → cellular organisms → Bacteria2160Open in IMG/M
3300025886|Ga0209632_10161717Not Available1222Open in IMG/M
3300029308|Ga0135226_1017137All Organisms → cellular organisms → Bacteria → PVC group645Open in IMG/M
3300032274|Ga0316203_1091881All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage858Open in IMG/M
3300032277|Ga0316202_10575005Not Available530Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous22.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine19.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater19.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine10.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine5.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine5.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater3.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine2.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001349Pelagic Microbial community sample from North Sea - COGITO 998_met_10EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001947Marine microbial communities from the Gulf of Maine, Canada - GS002EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300011129Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02EnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024321Seawater microbial communities from Monterey Bay, California, United States - 31DEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025621Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025699Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1014860323300000101MarineMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADAE*
DelMOSpr2010_1006934213300000116MarineMMENKYWLLEPSDSYLDINQDDIDMMRWEAGLEPDCMTLAKAKREREMLEEEEETDE*
DelMOWin2010_1001341973300000117MarineMENKYWLLEPQDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDGEEVSKV
DelMOWin2010_1005631113300000117MarineMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV*
DelMOWin2010_1010883023300000117MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFKPDAMTLAKAKREEELLEECEDES*
OpTDRAFT_1003016683300000928Freshwater And MarineMENKYWLLEPLDSYLDINQDDIDEMREEAGLEPDAMTLAKAKKEEEETNE*
BpDRAFT_1004315723300000930Freshwater And MarineMMENKYWLLEPLDSYLDINQDDIDEMREEAGLEPDAMTLAKAKKEEEETNE*
JGI20154J14316_1006428943300001348Pelagic MarineMMENKYWLLEPSDSFLDINQDDIDEMRWEAGLEPLDCMTLAKAKREREMLEEEEETDE*
JGI20160J14292_1001069013300001349Pelagic MarineNKYWLLEPSDSYLDINQDDIDEMKWEAGLEPDCMTLAKAKREREMLEEEEETDE*
JGI24003J15210_1000359053300001460MarineMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEEELEECEDADV*
GOS2218_100264233300001947MarineMMENKYWLLEPRDNFLDINQDDIDQMNERAGFDSMTLPKANKEQEMLDKLQKDNE*
Water_10138423300002930Estuary WaterMENKYWLLEPSDSFLDINQDDIDMMNWEAGFEPDAMTLAKAKREVEEMGEIDDE*
Ga0055584_10158524213300004097Pelagic MarineENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPLDCMTILDSLEEKDNDN*
Ga0065861_113427323300004448MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEGE*
Ga0075462_1022997533300006027AqueousEVMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV*
Ga0098048_103414233300006752MarineMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECADE*
Ga0098055_103234933300006793MarineMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEQCADE*
Ga0098055_104332443300006793MarineMENKYWSLEPLDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNDN*
Ga0075467_1008191663300006803AqueousMENKYWLLEPSDSYLDINQDDIDEMRWEAGLEPDCMTLAKAKREREMLEEEEETDE*
Ga0075467_1016752233300006803AqueousMENRYWALEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEDEEECADEV*
Ga0075467_1041690513300006803AqueousEVMENKYWLLEPRDSFLDVNQDDIDEINWKAGFKPDAMTLAKAKREEELLEECEDES*
Ga0070750_1016592323300006916AqueousMENRYWALEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLDECDED*
Ga0070748_106985343300006920AqueousMENKYWLLEPSDSFLDINQDDIDEMRWKAGLELEPDCMTLAKAKKEQDILDTLEEKDNDN
Ga0098050_103062123300006925MarineMENKYWSLEPLDSFLDINQDDIDEMSWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNDN*
Ga0075468_1020457533300007229AqueousMENKYWLLEPRDSFLDVNQDDIDEINWKAGFKPDAMTLAKAKREEELLEECEDES*
Ga0070745_116969023300007344AqueousMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKLEEELLEECADEV*
Ga0115566_1042973433300009071Pelagic MarineMENKYWLLEPSDSFLDINQDDIDEMRWEAGLEPDCMTLAKAKREREEEEE
Ga0115566_1065598423300009071Pelagic MarineMENKYWLLEPSDSFLDINQDDIDEMKWEAGLEPDCMTLAKAKREREMLEEEEETDE*
Ga0115550_108528833300009076Pelagic MarineMENKYWLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSKV*
Ga0115545_123816223300009433Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECEDES*
Ga0115562_123421023300009434Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKANREEELLEECEDAEV*
Ga0115008_1140445223300009436MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV*
Ga0115561_109673123300009440Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFVPDAMTLAKAKREEELLEECEDAEV*
Ga0115571_109956513300009495Pelagic MarineMENKYWLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELL
Ga0115571_134518423300009495Pelagic MarineMMENKYWLLEPSDSFLDINQDDIDEMRWEAGLEPDCMTLAKAKREREMLEEEEETDE*
Ga0115571_143405613300009495Pelagic MarinePRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV*
Ga0115569_1011045033300009497Pelagic MarineMENKYWLLEPSDSFLDINQDDIDEMRWEAGLEPDCMTLAKAKREREMLEEEEETDE*
Ga0115564_1033031533300009505Pelagic MarineMENKYWLLEPSDSYLDINQDDIDEMRWEAGLEPDCMTLPKAKRERELLEEEEETDE*
Ga0115572_1021876333300009507Pelagic MarineIREVMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV
Ga0115572_1077298823300009507Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECEDAEV*
Ga0151672_13282613300011129MarineMENRYWALEPRDSFLDINQDDIDEINWKAGFEPDDMTLAKAKREEEEMGEIDDE*
Ga0129331_112284433300012524AqueousMENKYWLLEPSDSYLDINQDDIDMMRWEAGLEPDCMTLAKAKREREMLEEEEETDE*
Ga0129327_1003649463300013010Freshwater To Marine Saline GradientMENKYWLLEPRDSFLDVNQDDIDEMRELTGLEPDAMTMAKAKREEELLEECADEV*
Ga0181387_1000257103300017709SeawaterMENKYWLLEPSDSFLDINQDDIDEMRWKAGLELEPDCMTLAKAKKEQDILDSLEEKENDN
Ga0181403_102626023300017710SeawaterMENRYWALEPRDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEEEMGEIDDE
Ga0181390_103133283300017719SeawaterMENKYWLLEPLDSYLDINQDDIDEMREEAGLEPDAMTLAKAKKEEEETNE
Ga0181398_104588123300017725SeawaterMENKYWSLEPLDSYLDINQDDIDEMNWKAGFEPIDPMTLAKAKKEQDILDSLEEKDNDN
Ga0181381_103586333300017726SeawaterMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEESADET
Ga0181401_108829023300017727SeawaterMMDNKYWLLEPRDSFLDINQDDIDEMNERAGFDSMTLAKAKKEQEMLDELEEKDNERNNH
Ga0181415_105517413300017732SeawaterMENKYWLLEPWDSFLDVNQDDIDEMRELAGLEPYAMTLAKAKREEELLEEWED
Ga0181392_124598823300017749SeawaterYWRSTTMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNE
Ga0181407_105386023300017753SeawaterMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECADEV
Ga0181382_109969223300017756SeawaterMENKYWLLEPWDSFLDVNQDDIDEMRELAGLEPYAMTLAKAKREEELLEEWEDAEV
Ga0181414_100182353300017759SeawaterMENKYWSLEPLDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNE
Ga0181422_100900493300017762SeawaterMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPIDPMTLAKAKKEQDILDSLEEKD
Ga0181422_114849633300017762SeawaterMENKYWSLEPLDSFLDINQDDIDEMNWKAGFEPIDPMTLAKAKKEQDILDSLEEKD
Ga0187217_103004463300017770SeawaterMCPFNIYWRSITMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILESLEEKDNE
Ga0181430_100934033300017772SeawaterMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPIDPMTLAKAKKEQDILDSLEEKDNE
Ga0181380_101942773300017782SeawaterMMENKYWALEPRDSFLDVNQDDIDEMREQAGLELEPDPMTLAKAHKEEQIIKEMEEKDDS
Ga0181380_109014213300017782SeawaterMCPFNIYWRSITMENKYWSLEPLDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNE
Ga0181380_115263323300017782SeawaterMENKYWLLEPWDSFLDVNQDDIDEMRELAGLEPYAMTLAKAKREEELLEECEDAEV
Ga0206128_120921733300020166SeawaterTIREVMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAE
Ga0206127_103790023300020169SeawaterMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV
Ga0206129_1009401613300020182SeawaterEVMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV
Ga0211504_1000986153300020347MarineMENKYWLLEPSDSFLDINQDDIDEMRWESGLEPDCMTLSKAKKEQDILDSLEEKDNDN
Ga0206677_1000333333300021085SeawaterMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEEECEDAEV
Ga0222718_1003203843300021958Estuarine WaterMENKYWLLEPLDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNDN
Ga0222716_1040445433300021959Estuarine WaterMENRYWALEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLDECDED
Ga0212030_100120623300022053AqueousMENKYWLLEPSDSYLDINQDDIDMMRWEAGLEPDCMTLAKAKREREMLEEEEETDE
Ga0212030_105643913300022053AqueousMMENKYWLLEPSDSYLDINQDDIDMMRWEAGLEPDCMTLAKAKREREMLEEEEETDE
Ga0212023_100534143300022061AqueousMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEEELEECEDAEV
Ga0212023_104214933300022061AqueousGVLKTTILEVMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSKV
Ga0196889_100531823300022072AqueousMENKYWLLEPSDSYLDINQDDIDEMRWEAGLEPDCMTLAKAKREREMLEEEEETDE
Ga0196889_100837623300022072AqueousMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSKV
Ga0196887_102531633300022178AqueousMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDGEEVSKV
Ga0196891_103915023300022183AqueousMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV
(restricted) Ga0255039_1011693633300024062SeawaterMENKYWLLEPLDSYLDINQDDIDEMKYWYGKPEEEELDCMTLAKAKREEEMLEEERE
Ga0228626_100885253300024321SeawaterMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECEDAEV
(restricted) Ga0255048_1019340833300024518SeawaterMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPYAMTLAKAKREEELLEECEDAEV
(restricted) Ga0255047_1032819143300024520SeawaterFGGPLKTTILEVMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEESEDAEV
Ga0208667_1000741183300025070MarineMENKYWSLEPLDSFLDINQDDIDEMNWKAGFEPIDSMTLAKAKKEQDILDSLEEKDNDN
Ga0208667_100214943300025070MarineMENKYWLLEPSDSFLDINQDDIDEMNWKAGFEPDAMTLAKAKREEELLEECADE
Ga0209535_1007077133300025120MarineMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEEELEECEDADV
Ga0209336_1011829813300025137MarineMENKYWLLEPRDSFLDVNQDDIDEVRELAGLEPDAMTLAKAKREEEELEECEDADV
Ga0208148_102517553300025508AqueousMENRYWALEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEDEEECADEV
Ga0208660_111044213300025570AqueousWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSKV
Ga0209405_108602323300025620Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKANREEELLEECEDAEV
Ga0209504_100412873300025621Pelagic MarineMENKYWLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSKV
Ga0209504_107339323300025621Pelagic MarineMENKYWLLEPSDSYLDINQDDIDEMKWEAGLEPDCMTLAKAKREREMLEEEEETDE
Ga0209504_109839523300025621Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEDGEDGEEVSK
Ga0209198_114910923300025640Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKANREEELLEECE
Ga0209715_117480513300025699Pelagic MarineGGVLKTTIREVMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEV
Ga0208899_104663913300025759AqueousYGGVLRTTILEVMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV
Ga0208425_112511033300025803AqueousTILEVMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV
Ga0208545_111089833300025806AqueousYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEEELEECEDAEV
Ga0209534_1006827943300025880Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLEECEDAEEVSKV
Ga0209632_1016171733300025886Pelagic MarineMENKYWLLEPRDSFLDINQDDIDEINWKAGFEPDAMTLAKAKREEELLE
Ga0135226_101713723300029308Marine HarborMENKYWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELS
Ga0316203_109188133300032274Microbial MatWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADEV
Ga0316202_1057500513300032277Microbial MatWLLEPRDSFLDVNQDDIDEMRELAGLEPDAMTLAKAKREEELLEECADAE

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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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