NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105814

Metagenome / Metatranscriptome Family F105814

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105814
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 101 residues
Representative Sequence LSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASADPVSTSPAAQH
Number of Associated Samples 91
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.33 %
% of genes near scaffold ends (potentially truncated) 83.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (78.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(24.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 29.91%    Coil/Unstructured: 70.09%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00676E1_dh 16.00
PF02779Transket_pyr 3.00
PF02780Transketolase_C 2.00
PF13240zinc_ribbon_2 1.00
PF03816LytR_cpsA_psr 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 16.00
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 16.00
COG1316Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)Cell wall/membrane/envelope biogenesis [M] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A78.00 %
All OrganismsrootAll Organisms22.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10488324Not Available588Open in IMG/M
3300005538|Ga0070731_10116209All Organisms → cellular organisms → Bacteria1773Open in IMG/M
3300005586|Ga0066691_10546886All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae690Open in IMG/M
3300006041|Ga0075023_100349145Not Available625Open in IMG/M
3300006047|Ga0075024_100403823All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300006052|Ga0075029_100743919All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas putida664Open in IMG/M
3300006162|Ga0075030_100421247All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300006172|Ga0075018_10328692All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas putida group → Pseudomonas putida761Open in IMG/M
3300006172|Ga0075018_10463189Not Available655Open in IMG/M
3300006172|Ga0075018_10849575Not Available504Open in IMG/M
3300006174|Ga0075014_100349297Not Available793Open in IMG/M
3300006354|Ga0075021_10549176Not Available735Open in IMG/M
3300009029|Ga0066793_10839097Not Available522Open in IMG/M
3300009089|Ga0099828_10039356All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio → unclassified Desulfovibrio → Desulfovibrio sp. X23863Open in IMG/M
3300009089|Ga0099828_10722627Not Available894Open in IMG/M
3300009093|Ga0105240_11363969Not Available746Open in IMG/M
3300009672|Ga0116215_1115093All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1203Open in IMG/M
3300009698|Ga0116216_10060228Not Available2337Open in IMG/M
3300010048|Ga0126373_11145157Not Available844Open in IMG/M
3300010397|Ga0134124_10579340All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1096Open in IMG/M
3300011270|Ga0137391_11417238Not Available541Open in IMG/M
3300011271|Ga0137393_11330299Not Available607Open in IMG/M
3300012010|Ga0120118_1061825All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis931Open in IMG/M
3300012208|Ga0137376_11441317Not Available579Open in IMG/M
3300012210|Ga0137378_11321766Not Available636Open in IMG/M
3300012357|Ga0137384_10493124Not Available1006Open in IMG/M
3300012363|Ga0137390_10034994All Organisms → cellular organisms → Bacteria4813Open in IMG/M
3300012683|Ga0137398_10099751All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1825Open in IMG/M
3300012923|Ga0137359_10858648Not Available784Open in IMG/M
3300012924|Ga0137413_10227067All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1270Open in IMG/M
3300012925|Ga0137419_10791446Not Available775Open in IMG/M
3300012931|Ga0153915_11851133Not Available706Open in IMG/M
3300012944|Ga0137410_10163590Not Available1704Open in IMG/M
3300012944|Ga0137410_10529776All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis966Open in IMG/M
3300014162|Ga0181538_10181807All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1190Open in IMG/M
3300014165|Ga0181523_10730191Not Available541Open in IMG/M
3300015054|Ga0137420_1032104Not Available1649Open in IMG/M
3300015054|Ga0137420_1032105Not Available1687Open in IMG/M
3300017927|Ga0187824_10199043Not Available680Open in IMG/M
3300017927|Ga0187824_10330394Not Available546Open in IMG/M
3300017928|Ga0187806_1213427Not Available658Open in IMG/M
3300017930|Ga0187825_10081426All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1111Open in IMG/M
3300017933|Ga0187801_10019067Not Available2317Open in IMG/M
3300017993|Ga0187823_10383388Not Available508Open in IMG/M
3300018006|Ga0187804_10024412Not Available2232Open in IMG/M
3300020199|Ga0179592_10272810Not Available755Open in IMG/M
3300020580|Ga0210403_11083946Not Available623Open in IMG/M
3300020582|Ga0210395_10809329Not Available698Open in IMG/M
3300021086|Ga0179596_10592201Not Available562Open in IMG/M
3300021088|Ga0210404_10845886Not Available523Open in IMG/M
3300021170|Ga0210400_10259889All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1421Open in IMG/M
3300021178|Ga0210408_11132190Not Available601Open in IMG/M
3300021404|Ga0210389_10678516Not Available808Open in IMG/M
3300021406|Ga0210386_11114219Not Available670Open in IMG/M
3300021407|Ga0210383_11461686Not Available567Open in IMG/M
3300021433|Ga0210391_11282280Not Available565Open in IMG/M
3300022721|Ga0242666_1112512Not Available639Open in IMG/M
3300022722|Ga0242657_1150370Not Available613Open in IMG/M
3300022731|Ga0224563_1010658Not Available744Open in IMG/M
3300024227|Ga0228598_1047140Not Available853Open in IMG/M
3300025927|Ga0207687_10620007All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Crossiella → unclassified Crossiella → Crossiella sp. SN42913Open in IMG/M
3300026320|Ga0209131_1169774All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1072Open in IMG/M
3300026341|Ga0257151_1023305Not Available654Open in IMG/M
3300026376|Ga0257167_1032114Not Available783Open in IMG/M
3300026557|Ga0179587_10381262Not Available917Open in IMG/M
3300027326|Ga0209731_1062427Not Available572Open in IMG/M
3300027625|Ga0208044_1024311Not Available2122Open in IMG/M
3300027651|Ga0209217_1175739Not Available585Open in IMG/M
3300027655|Ga0209388_1153690Not Available650Open in IMG/M
3300027674|Ga0209118_1103363Not Available804Open in IMG/M
3300027875|Ga0209283_10659890Not Available657Open in IMG/M
3300027884|Ga0209275_10182908All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1126Open in IMG/M
3300027894|Ga0209068_10434627Not Available751Open in IMG/M
3300027903|Ga0209488_10028929Not Available4035Open in IMG/M
3300027911|Ga0209698_10599652Not Available846Open in IMG/M
3300027911|Ga0209698_10654968Not Available803Open in IMG/M
3300030007|Ga0311338_11728176Not Available567Open in IMG/M
3300030969|Ga0075394_11199958Not Available532Open in IMG/M
3300031057|Ga0170834_104971479Not Available572Open in IMG/M
3300031231|Ga0170824_118220620All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1305Open in IMG/M
3300031234|Ga0302325_13073807Not Available537Open in IMG/M
3300031708|Ga0310686_113060777Not Available681Open in IMG/M
3300031712|Ga0265342_10199430All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1088Open in IMG/M
3300031754|Ga0307475_11121971Not Available615Open in IMG/M
3300032174|Ga0307470_10053617Not Available2081Open in IMG/M
3300032515|Ga0348332_11449473Not Available535Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil24.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds15.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil3.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.00%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.00%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil1.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.00%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012010Permafrost microbial communities from Nunavut, Canada - A7_35cm_12MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022731Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4EnvironmentalOpen in IMG/M
3300024227Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026341Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-AEnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027326Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031712Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaGHost-AssociatedOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300033887Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1048832413300001661Forest SoilSGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
JGIcombinedJ26739_10164885223300002245Forest SoilLFVSRDAGNTWGHLDSPNGDSLLSALRSRDSGNQLMVASATEGLFVLDMGSAASASANPVDISSTPSNSGTGR*
Ga0070731_1011620933300005538Surface SoilESWRQANLTELSIDDLTPVRGAIVVSTDKGSLFLSRDAGKTWGHLDSPNAENTLSALRSHEAGNQLIVASSTEGLFVLDMGAASSALADPVAGSPVPRR*
Ga0066691_1054688613300005586SoilGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0070766_1089426213300005921SoilLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLIAASDTEGLFVLEMGAASSASAGPAPASPVPQH*
Ga0075023_10034914513300006041WatershedsSDENTVVLASDHGVFVSRDAGGSWQQANLSELSIDDLASVRNAVVVSTAKGALFLSRDGGKTWGHLDGPNAEGALSALRSRDAGNQLVAASATEGLFVLEMGSASSASTNSTPASPAARQ
Ga0075024_10040382313300006047WatershedsRDTGESWHQANFSELSIDDLTAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLYVLEMGSASSASADSVPTSPAAQH*
Ga0075029_10074391913300006052WatershedsIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075015_10007526433300006102WatershedsLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLYVLEMGSASSASADSVPTSPAAQH*
Ga0075030_10031940413300006162WatershedsYLSRDAGKTWGHMQGPNADNSISALRSREAGNQLVAASATEGLFVMEMGSASPSSANASSVLPAGQK*
Ga0075030_10042124713300006162WatershedsFVSRDTGESWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075018_1032869213300006172WatershedsSWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075018_1046318913300006172WatershedsVSWRQANLSELQIDDMTPLKNALVVSSARGALFLSRDAGKTWGHLDGPNADSAFSALRSRDAGNQLVAASATEGLFVLDMGTAASASAELDGDLPLRKQ*
Ga0075018_1084957513300006172WatershedsENTVVLASDHGVFVSRDAGESWHQANISELSIEDLASVRNAVVVSTAKGSLFLSRDAGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASFASTDSIPASPSVQQ*
Ga0075014_10034929723300006174WatershedsPFEPRGSLHLHPTDENSVVIASDHGVFVSRDTGESWHQANLSELLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ*
Ga0075021_1054917623300006354WatershedsSLHLHPTDENTVVLASDHGVFVSRDAGESWNQANISELAIDDLAPVRNNVVVSTAAGELFLSRDSGKTWGHMDGPNTDGPLSALRSRESGNQLVAASATEGLYVLEMGNAASASTDANSDSPAVNK*
Ga0066793_1083909713300009029Prmafrost SoilSELSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGRMDGPNAEGTLSALRSREAGNQLVVASATEGLFVIEMGSASSASADSIPASPAGKQ*
Ga0099828_1003935643300009089Vadose Zone SoilSMDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ*
Ga0099828_1072262723300009089Vadose Zone SoilDLAPVRNGVVVSTESGTLFFSRDGGKSWGKMDGPAVDSTLSALRSRQAGSQLVAASSTEGLFILDMGSASSASADPVDASPTGKQ*
Ga0105240_1136396913300009093Corn RhizosphereANLSELSIEELAPVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH*
Ga0099792_1120337513300009143Vadose Zone SoilKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPAGPLQAPKP*
Ga0116215_111509313300009672Peatlands SoilLHLSDENTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH*
Ga0116216_1006022813300009698Peatlands SoilLSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH*
Ga0126373_1114515713300010048Tropical Forest SoilRDAGESWHQASLSELLIDDMTPVRDSVVVSTAKGTLFLSRDGGKTWGPMSGPSVDSSLSALRSRDEGNQLVAASATEGLFVLDMGLASSASADEAPDSPAPSR*
Ga0134124_1057934013300010397Terrestrial SoilKNWVSRALPFEERGPVHLHPADDNAVVLASGHGVYVSRDSGESWHQANLSELSIEELAPVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH*
Ga0137391_1141723813300011270Vadose Zone SoilPRGSLQLYPSDENTVVLASDHGFFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTAKGTLFLSRDAGKTWGHMEGPSAEGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASVDTIPASPAAKQ*
Ga0137393_1133029923300011271Vadose Zone SoilSVRNAVVVSTTKGTLFLSRDGGKTWGHLDGPNAEGTLSALRSREAGNQLVAASATEGLFVLEMGSASSAAADSIPAAPEAKQ*
Ga0120118_106182513300012010PermafrostDDLASVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGTLSALRSRDAGNQLIAASATEGLFVIEMGSASSASADSIPASPAGKQ*
Ga0137389_1133563013300012096Vadose Zone SoilGALFLSRDGGKTWGHMDGPSAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSAAADSIPASPEAKQ*
Ga0137376_1144131713300012208Vadose Zone SoilTVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137378_1132176623300012210Vadose Zone SoilVLASDRGVFTSRDAGESWRQANLSELSIDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPMQ*
Ga0137384_1049312423300012357Vadose Zone SoilMDEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ
Ga0137390_1003499463300012363Vadose Zone SoilEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ*
Ga0137398_1009975113300012683Vadose Zone SoilPFEPRGPLHLHPTDEKTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAIVVSTAKGTLFLSRDGGKSWGHMDSPVADGALSALRSREAGNQLVAASSTEGLFVLEMGSASSASADAVPASPAAKQ*
Ga0137359_1085864813300012923Vadose Zone SoilGGLHFYTSGEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137413_1022706713300012924Vadose Zone SoilDAGGSWRQANLSELSLEDMASVKTAIVVSTAKGVLFVSRDAGKTWGHLEGPSGDSSLSALRSRESGNQLVAVSATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137419_1079144623300012925Vadose Zone SoilSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDSSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0153915_1185113313300012931Freshwater WetlandsDESTIVLASDHGVFISRDAGESWRQANLSELLIEDMAPVKNAIVVSTAKGALFLSRDGGRTWGHMDGPSADNALSALRSRDTGNQLVAASATEGLFILDMGSASSASTDTVGTLPGAKQ*
Ga0137410_1016359023300012944Vadose Zone SoilLSELAVDDMASVKSAIVVSTAKGALFVSRDAGKTWGHLEGPSGDSSLSALRSRESGNQLVAASATEGVFVLDMGSASSASADSVETPLAPKQ*
Ga0137410_1052977623300012944Vadose Zone SoilEATVVLASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTARGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQEPKP*
Ga0181538_1018180713300014162BogQSWRQANLSELLIDDLTPLRNALVVSTANGALFLSNDVGKTWRQMDSPAAEGAVSALRSREPGNQLVAATATEGLFVLEMGSASSASADSIADSPAPKQ*
Ga0181523_1073019113300014165BogTPIKSAIVVSTAKGALFLSRDAGKTWGRLSGPSADSSISALRSRDTANQLVAASATEGLFVLDMGSASSASVDPEAISPAPRQ*
Ga0137420_103210423300015054Vadose Zone SoilLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP*
Ga0137420_103210513300015054Vadose Zone SoilLSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFILDMGSASSASVDPVGTLQAPKP*
Ga0187824_1019904313300017927Freshwater SedimentVVLAGDHGVFIFRDAGESWRQASLSELSIDDLASVRDAVVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSREAGSQLVAASATEGLFVLEMGSASSASVDSIPASPSAQQ
Ga0187824_1033039413300017927Freshwater SedimentASNDGVFVSRDAGASWRQASLSELSMDDMASVRNAVVVAAADGKLFLSRDGGKSWGRMEGPNAEGELSALRSRDAGNQLVAASATEGLYVLDMNSASSASADSVPGSPADQQ
Ga0187806_121342713300017928Freshwater SedimentRQASLSELSIDDLASVRDAIVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSRDAGGQLVAASATEGLFVLDMGSASSASADSIPASPSAQQ
Ga0187825_1008142623300017930Freshwater SedimentENTVVLASNHGVFVSRDTGESWHQANLSELSIEDLAAVRNAVVVSTEQGTLFLSQDGGKTWGHMNGPNAEGSLSALRSREAGNQLVAASATEGLYVLEMGSASSASADPVPASPGAQH
Ga0187801_1001906733300017933Freshwater SedimentSIDDLASVRGAVVVSTEQGTLFLSRDGGKTWGHLDGPNVDSTLSALRSREAGGQLVAASATEGLFVLEMGSASSASADSTPASPSAQQ
Ga0187823_1038338813300017993Freshwater SedimentLLIDDMAPVRNGVIVSSANGRLFLSRDDGNTWGRMEGPGADSTLSALRSREAGNQLVAASATEGLFVLDMGSASSASADMNSATAAPQK
Ga0187804_1002441213300018006Freshwater SedimentAVVLASDHGVFISRDAGESWRQASLSELSIDDLASVRDAIVVSTEKGTLFLSRDGGKTWGHLDGPNVDSTLSALRSRDAGGQLVAASATEGLFVLDMGSASSASADSIPASPSAQQ
Ga0179592_1027281013300020199Vadose Zone SoilASDRGVFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0210403_1108394613300020580SoilLLASDHVVFVTRDAGASWHQANLSELSIDDMAPVRNAIIVSSANGRLFLSRDDGKTWGRMDGPNADSTLSALRSREAGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210395_1080932913300020582SoilVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSALRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0179596_1059220123300021086Vadose Zone SoilNLSELSMDDMASVKSAIVVSTTRGALFLSRDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ
Ga0210404_1084588623300021088SoilQANLSELSIDDMAPVRNAIIVSSVNGRLFLSRDDGKTWGRMDGPNADSTLSALRSRETGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210400_1025988923300021170SoilNVVLTSDRGVFISRDAGDSWRQANLSELSMDDMATVKSAIVVSTAKGALFLSRDAGKTWAHLDGPGGDSSLSALRSRDSNNQLVAASATEGLYVLDMGSASSASADPVETPLAPKH
Ga0210405_1053252713300021171SoilTAKGTLFLSRDNGKTWGNMTGPTSESTLSALRSRETGNQLVVASATEGLFVLDMGSASSASADSVPTSPAGKR
Ga0210408_1113219013300021178SoilGKTWISRALPFEPRGQVHFEPMDGSTVVLASDHGVYLSRDAGESWRQANLNEMLIDDLAPVRSALVASTAKGSLFLSRDGGKSWGTLNGPSSEGALSALRSREAGNQLVVAAGTEGLFVLDMGSASSASADPIADSPAPRH
Ga0210389_1067851613300021404SoilSELSIDDMAPVKNAVVVSTARGDLFLSRDAGKTWGRMDGPSADNSISALRSREAGNQLVAASATEGLYVMEMGTASSASANANSAEPGGQK
Ga0210386_1111421923300021406SoilTKLSELAIDDLASVRNAVVVATAKGELFLSRDGAKTWGPMDGPNAEGGTLSALRSREAGNQLVAASSTEGLFVLDMGAASSASADSMASPAAQH
Ga0210383_1146168623300021407SoilTDENTVVLASDHGVFVSRDTGESWHQANLSELSIEDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0210391_1128228013300021433SoilHGVFVTRDAGASWHQANLSELSIDDMAPVRNAIIVSSANGRLFLSRDDGKTWGRMDGPNADSTLSALRSRETGNQLVAASATEGLFVLDMGSASSASADMNPATAAPQK
Ga0210409_1103456313300021559SoilVVSTGQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0242666_111251233300022721SoilGESWHQASLSELSIDDLAPVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSAFRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0242657_115037013300022722SoilESWHQANLSELSIEDLAAVRNAVVVSTGQGTLFLSRDGGKTWGHMDGPNAEGAISALRSREAGNQLVAASATEGLYVLEMGSASSASTDPVTASPAAQH
Ga0224563_101065823300022731SoilESWHQANLSELSIDDLAPVRNAVVVSTAKGTLFVSRDGGKTWGHMDGPTRDDSTLSALRSREAGNQLVAASATEGLFVLEMGSASSASADSIPASPAAKQ
Ga0228598_104714013300024227RhizosphereLHPTDDNTVVLASDHGVFVSRDTGESWHQANLSELSIDDLAPVRNAVVVSTAKGTLFVSRDGGKTWGHMDGPTRDDSTLSALRSREAGNQLVAASATEGLFVLEMGSASSASADSIPASPAAKQ
Ga0207663_1127581013300025916Corn, Switchgrass And Miscanthus RhizosphereLYLSRDGAKSWVRLEGPNAEGALSALRSREAGNQLIAASATEGLFVLDIGSASLTSADSMPASQTANH
Ga0207687_1062000723300025927Miscanthus RhizosphereVRNALVVSTEKGILYVSRDGAKSWVRLEGPNADGALSALRSREAGNQLVAASATEGLFVLEIGSASLASADSMPASQTASH
Ga0209131_116977423300026320Grasslands SoilANLSELSLEDMASVKSAIVVSTARGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0257151_102330513300026341SoilSRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0257167_103211413300026376SoilFISRDAGGSWRQANLSELSLEDMASVKSAIVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0179587_1038126223300026557Vadose Zone SoilLDDLAPVRNGVVVSTGSGTLFLSRDGGRSWGKMDRPAVDSTLSALRSRQAGSQLVAASSTEGLFILDMGSASSASADPVDASPTGKQ
Ga0209731_106242713300027326Forest SoilNSVVVSTAKGTLFLSRDAGKTWAAMGSPGGDSSLSALRSRDEGNQLVAASATEGLFVLDMGSTSSAAADEAPDSESPAALH
Ga0208044_102431113300027625Peatlands SoilGVFVSRDTGESWHQANLSELSIDDLAAVRNAVVVSTEQGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREARNQLVAASATEGLYVLEMGSASSASADPEPASPAAQH
Ga0209217_117573913300027651Forest SoilHFHTADESTVVLASDHGVFISHDAGESWRQANLSELSMDDMASVKSAIVVSTTKGALFLSRDAGKTWGHLEGPNGDSTLSALRSCESGNQLVAATATEGLFVLDMGSTSSALADSMDLPLRPKH
Ga0209388_115369013300027655Vadose Zone SoilVVSTAKGVLFVSRDSGKTWGHLEGPSGDNSLSALRSRESGNQLVAASATEGLFVLDMGSASSASVDPVGTLQAPKP
Ga0209118_110336313300027674Forest SoilLSIDDLAAVRNAVVVSTAKGTLFLSRDGGKTWGHMDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASADPVSTSPAAQH
Ga0209283_1065989013300027875Vadose Zone SoilSAIVVSTATGALFVSRDAGKTWGPMEGPNGDNSLSALRSRESGNQLVAASATEGLFEMDMGSASSASAGPVETPLAPKQ
Ga0209275_1018290833300027884SoilMSRTLPFEPRGQLHLHPQDEKTVVLASDHGVFVSRDTGESWHQASLSELSIDDLAPVRNGVVVSTAKGSLFLSRDGGKTWGPMNGPDAEGSLSALRSREVGNQLVAASATEGLFVLEMGAASSASADSIPASPTAQQ
Ga0209068_1043462713300027894WatershedsPFQPRGSLHLHPTDENTVVLASDHGVFVSRDAGESWNQANISELAIDDLAPVRNNVVVSTAAGELFLSRDSGKTWGHMDGPNTDGPLSALRSRESGNQLVAASATEGLYVLEMGNAASASTDANSDSPAVNK
Ga0209488_1002892913300027903Vadose Zone SoilTLPVGPRGALHFQAADETTVVLASDRGVFTSRDAGESWRQANLSELSMDDIASVKSAIVVSTTRGALFLSPDAGKTWGHLEGPNGDSSFSALRSRESGNQLVAASATEGLFVLDMGSASSASADPVGTPLAPTQ
Ga0209006_1037010613300027908Forest SoilGTLFLSRDAGKSWAQLDGPSAEGTISALRSRDAGNQLIAASSTEGLFVLEMGSASSTSADPVRASLPAKQ
Ga0209698_1030136323300027911WatershedsSGQLFLSRDSGKTWGHMDGPNAEGSISALRSREAGNQLVAASATEGLYVLEMGSATATSAGDNGAASGTVTVNSKTPYGTPCVY
Ga0209698_1059965213300027911WatershedsLIDDIAPVRNAVVVSTAKGTLFLSRDAGKTWGHMTGPTADSALSALRSREAGNQLVAASATEGLFVLDMASASSASADSIPASPAGQQ
Ga0209698_1065496813300027911WatershedsLTPVRNAVIVSTAKGTLFLSRDGGKTWGNMAGPTSESTISALRSREAGNQLVAASATEGLFVLDMGSASSASADSVPASPAAKQ
Ga0311338_1172817613300030007PalsaWHQASLTELSIDDLAPVRDAIVVSTANGSLFLSRDGGKIWAHLDGPRAEGSLSALRSRDAGNQLIAASATEGLFVLDMGSASSASSDSTTTLPEAWK
Ga0075394_1119995813300030969SoilNLSELSIDDLASVRNAVVVSSAKGTLFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0170834_10497147913300031057Forest SoilVFVSRDTGESWQQANLSELSIDDLASVRNAVVVSSAKGALFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0170824_11822062013300031231Forest SoilDEKTVVLASDHGVFVSRDTGESWQQANLSELSIDDLASVRNAVVVSSAKGALFLSRDGGKTWGHMDGPNAEGTLSALRSREAGNQLVAASATEGLFLLEMGSASSASADSTITSPAAKQ
Ga0302325_1307380713300031234PalsaKTWIARTLPFEPHGSMHIQPADESTVVLAGDHGVFLSRDAGESWRQANLSELLIDDLAPVRSAMVVSTLNGTLFVSRDGGKSWVHLEGPGSDSTLSALRSREAGNQLVAASATEGLFILDMGSASSASVDPAADSSAPRQ
Ga0310686_11306077723300031708SoilHIRTADQSTVVLASDRGVFVSRDAGESWRQANLSELYADDMTSVKSAIVVSTANGALFVSRDAGKTWGQLEGPSGDNSLSALRSGESRNQLVAASATEGLFVLDMGPATSASADSVETPLAPKQ
Ga0265342_1019943013300031712RhizosphereESWHQANLSELSIEEMAPLKNAVAVSTAKGEVFLSRDGGKSWGRVDSPGAQENLSALRSREAGNQLVAATATEGLFVLEVGPASSASIGTNEDMAAPRR
Ga0307475_1112197113300031754Hardwood Forest SoilYGVFISRDTGESWQQANLSELWIDDLAFIRNTVVVSTSKGTLFFSRDSGKTWEHLDGPKAEGALSALRSREMGNQLVAASSTEGLFVLEMGPAASASADSAPASAAVKQSLH
Ga0307479_1170082913300031962Hardwood Forest SoilTVVVSTSKGTLFFSRDSGKTWEHLDGPKAEGALSALRSREMGNQLVAASSTEGLFVLEMGPAASASADSAPASAAVKQSLH
Ga0307470_1005361713300032174Hardwood Forest SoilWKQANLSELSIDDMVPVKNAVVVSTARGDLFLSRDAGKTWGHMEGPSADNSISALRSREAGNQLVAASATEGLYVMEMGSASSASADANSALPVGQK
Ga0307471_10424303723300032180Hardwood Forest SoilVVVSTTKGTLFLSRDGGKTWGHLDGPNAEGALSALRSREAGNQLVAASATEGLFVLEMGSASSASTNSTPASPAARQ
Ga0348332_1144947313300032515Plant LitterSIDDLASVHGAVVVSTEKGSLFLSRDAGKTWGHLDSPNAENTLSALRSLEAGNQLVVASSTEGLFVLDMGAGSSASADPVEGPSVPRR
Ga0334790_159585_456_6713300033887SoilSGALFLSNDVGKTWRHMDSPGAEGAVSALRSREAGNQLFAATATEGLFVQDMGSASSASADSIADSPAPKQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.