NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105800

Metagenome / Metatranscriptome Family F105800

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105800
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 89 residues
Representative Sequence MTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Number of Associated Samples 53
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 42
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(52.000 % of family members)
Environment Ontology (ENVO) Unclassified
(65.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.000 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.72%    β-sheet: 0.00%    Coil/Unstructured: 48.28%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF03401TctC 1.00
PF13180PDZ_2 1.00
PF02550AcetylCoA_hydro 1.00
PF06577EipA 1.00
PF03703bPH_2 1.00
PF02743dCache_1 1.00
PF03050DDE_Tnp_IS66 1.00
PF02082Rrf2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0427Propionyl CoA:succinate CoA transferaseEnergy production and conversion [C] 1.00
COG0640DNA-binding transcriptional regulator, ArsR familyTranscription [K] 1.00
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 1.00
COG1725DNA-binding transcriptional regulator YhcF, GntR familyTranscription [K] 1.00
COG1959DNA-binding transcriptional regulator, IscR familyTranscription [K] 1.00
COG2186DNA-binding transcriptional regulator, FadR familyTranscription [K] 1.00
COG2188DNA-binding transcriptional regulator, GntR familyTranscription [K] 1.00
COG2378Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domainsTranscription [K] 1.00
COG2524Predicted transcriptional regulator, contains C-terminal CBS domainsTranscription [K] 1.00
COG2972Sensor histidine kinase YesMSignal transduction mechanisms [T] 1.00
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.00
COG3402Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 1.00
COG3428Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domainFunction unknown [S] 1.00
COG3436TransposaseMobilome: prophages, transposons [X] 1.00

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil52.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil14.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066388_10081067433300005332Tropical Forest SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ*
Ga0066388_10260667523300005332Tropical Forest SoilMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGLLPKDHAELLLRQAIETHATAGPGNRGAAELLAVVLESLSAIQPPTRQ*
Ga0066903_10301322413300005764Tropical Forest SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ*
Ga0066903_10376527413300005764Tropical Forest SoilMTDPDPDPDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRKAIETHATAGPGNRGAAELLAVVLQSLSEIEPPTRQ*
Ga0066903_10541480113300005764Tropical Forest SoilMTDPNLNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ*
Ga0066903_10679089723300005764Tropical Forest SoilPFMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ*
Ga0066903_10838414813300005764Tropical Forest SoilMTDPDPDPVEQANVAAAAIAGFTLAQFAFGELVKNGILPRGHAEQLLRQAIETHAAAGPGNRGAAELLAVVLQSLSAIESPTRQ*
Ga0070717_1049234123300006028Corn, Switchgrass And Miscanthus RhizosphereMTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ*
Ga0075018_1051767723300006172WatershedsMTDPNRDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ*
Ga0070712_10102439413300006175Corn, Switchgrass And Miscanthus RhizosphereMTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSEIQPPTRQ*
Ga0126374_1159364413300009792Tropical Forest SoilVFWSGPLWNKIAAQRGTFMTDPEPDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGLLARGDAEQLLRQAIEAHASAGPGDRDAAKLLTVVLQSLSALQPPTRQ*
Ga0126374_1190653023300009792Tropical Forest SoilMTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGIVPRGDAEQLLRQALEAHATAGPGNQAAAKLLTVVLQSLYACSRQLGNRAGRPLRRQA*
Ga0126380_1094982713300010043Tropical Forest SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIQSPTRQ*
Ga0126380_1102982913300010043Tropical Forest SoilMTDLPPNPDELDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ*
Ga0126380_1137279613300010043Tropical Forest SoilVVWSGQLWNKLATQRGTFMTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILARGDAEQLLRRAIDANATGGPGNRGAAELLTVVLQSLYALQSPTRQ*
Ga0126373_1202972623300010048Tropical Forest SoilMTDPDPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ*
Ga0126377_1244090113300010362Tropical Forest SoilMTNPEPDTDPVEQANIAAAAIAGFTLAQFAFGELIKNGILARGDAEQLLRRAIDANATGGPGNRGAAELLTVVLQSL
Ga0126379_1212800713300010366Tropical Forest SoilMTDPNPNLDPDQVDEGEQASVAAAAIASFTLAQFAFGELIKNGILPKSHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ*
Ga0126379_1344089223300010366Tropical Forest SoilMTDPCPDPDAVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSISAIEPPTRQ*
Ga0126383_1328249923300010398Tropical Forest SoilPANPTVALARIEPRAFMTDPDPDPDAVEEANVAAAAIAGFTLAQFALGELIKNGIPPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLAAIESPTRQ*
Ga0164303_1125737713300012957SoilMTDPNPNLDPDQVDEGEQASIAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIDTHAAAGPGNRGAAE
Ga0126369_1126822123300012971Tropical Forest SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ*
Ga0126369_1341372723300012971Tropical Forest SoilPCFRKGYLANPTVPLAPYRAVHIESRAFMTDPDPNLDPDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAEQLLTHAIETHATAGPGNRAAAELLAVFLQSLSAIESPTRQ*
Ga0182036_1020237413300016270SoilMTDPDLDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRKAIETHAAAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182036_1037413023300016270SoilDPDLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182036_1054929513300016270SoilMTDPKPNLDPDEVDEVEQANVAAAAITGFTLAQLAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLA
Ga0182036_1113920813300016270SoilMTEWSSPLAATVRSLYLREIGSGPSRVPFMTDPNPNLDPDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHVLRHAIETHATGGPGNRGAAELLAVVLQGLSAVQPPTRASA
Ga0182036_1120029813300016270SoilMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIEIHATAGPGNRAAAELLAVVLQSLAAIESPTRQ
Ga0182041_1046061623300016294SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFGFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0182041_1058196323300016294SoilMTDPNPNLDPDEVDEGEQSNVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSEIRPPTRQ
Ga0182041_1189074013300016294SoilNIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182041_1207673423300016294SoilMTNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKGQAEQLLKHAIETHAIAGPGNRAAAELLAVVFQSLSTIESPTRQ
Ga0182033_1119767433300016319SoilPDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182033_1210157313300016319SoilMTDLNSNLDPDEVEPANVAAAAIAGFTLAQFAFGELIKSGILPKDHAEHLLREAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0182035_1025885623300016341SoilAATVRSLFVRSRQWSPVEVFMTDLIPNPDEVDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0182035_1032454623300016341SoilMTDPDPHLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAERLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182032_1045224913300016357SoilMTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0182032_1094204523300016357SoilMTDPDLDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGILPRGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182032_1178557913300016357SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATSGPGNRGAAGLPAVVLQSISAIAPPTRQ
Ga0182032_1181524013300016357SoilLATQRGTFMTDPDLDPDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0182034_1013791523300016371SoilMTDPDPDLDPDSVEQATVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0182040_1104715123300016387SoilMTDPDLDPDAVEEANVAAAAGHAEHLLKHAIETHATVGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0182040_1126891813300016387SoilMTDPDPDLDPDPVEQANVGAAAIAGFTLAQFAFGELIKNGILPKGHAEQLLRQAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ
Ga0182037_1021102223300016404SoilMTDPDLDLDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLAVVLQSLSAIESPTRQ
Ga0182037_1048299913300016404SoilMTDPKPNLDPDEVDESEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAAVLQGLSSIQPPTRQ
Ga0182037_1062038913300016404SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGALRQYAMLPKDQAEHFPRQAFEPQATPGPGNRGAAELLAAVLQSLSAVQPPTRQ
Ga0182037_1079572423300016404SoilMTDPNLNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0182039_1202632513300016422SoilMTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSA
Ga0182038_1101876313300016445SoilRAFMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGLLPRGHAEHLLKHAMETHATAGPGNRAAVELLAVVLQSLSAIEPPTRQ
Ga0210408_1126204213300021178SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGALIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0210402_1014200543300021478SoilMTDPNSDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIDTHAAAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0210402_1055369623300021478SoilMTDPNPDLDPDEVEQANVAAAAIACFTLAQFAFGELIKSGILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0126371_1262641923300021560Tropical Forest SoilMTDPNPNLDPDEVDEVEQANVAAAAIFTLAQFAFGELIKNGILPKDHAEHLLRQAIETHATAGPGNRGAAELLAAVLQGLSAVQPPTRQ
Ga0126371_1390807513300021560Tropical Forest SoilMTDPNPDLDPDEVEQANVAAAAIAVFTLAQFAFGELIKNGILPKGDAEHLLRQAIDMHAAAGPGNRGAAELLAVVLQGLSAIQAPTRQ
Ga0242658_109835813300022530SoilPFMTDPNPNLDPDEVDEVEQADVAAAAIAGFTLSQLAFGELIKRGLLPKDHAEHLLRLAIETHGTTGPGNRGAAELLAAVLQGLSAIQPPTRQ
Ga0242662_1010708513300022533SoilMTDPNPDLDPDEGEQASVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRQAIETHATAGPGNRGAAELLAVVLQSLSAVQPPTRQ
Ga0207693_1049752423300025915Corn, Switchgrass And Miscanthus RhizosphereMTDPNPNLDPDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKGDFLLRQAIETHAAVAGPGNRGAAELLTVVLQG
Ga0209526_1092584623300028047Forest SoilTRRETIRQGAKNPRKSLWREIVSDASGGPFMTDPNPDLDSDEVEQANVAAAAIAGFTLAQFAFGELIKSGILARGDAEHLLRQANETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0170820_1238466523300031446Forest SoilMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAVQPPTRQ
Ga0318538_1066984813300031546SoilGSGPSRVPFMTDPNPNLDPDEVDEVDEVEQANVAAAAIAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0310915_1054588923300031573SoilMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATVGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0306917_1045859723300031719SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ
Ga0306917_1077112413300031719SoilTDPNPDLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLPRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306918_1093256223300031744SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306918_1123985113300031744SoilAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0318546_1099836313300031771SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTR
Ga0318548_1041284713300031793SoilMPEWSSPLAATVRSLYLREIGSGLSRVPFMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0318497_1087385313300031805SoilMTDPNPNLDPDEGEQANVAAAAIAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATVASPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0310917_1119817313300031833SoilMTDPDPDPHLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0306919_1080756513300031879SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0306919_1087968113300031879SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306925_1079289513300031890SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELL
Ga0306925_1096307223300031890SoilMTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0306925_1148420213300031890SoilMTDPDPDPDAVEEANVAAAAIAGFTLAQFALGELIKNGILPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0318520_1095434313300031897SoilNIAAAAIAGFTLAQFAFGELIKNGILPRGEAENLLRQAIEANATAGPGNRAAAELLAIVLQNISGFQPPTRQ
Ga0306923_1079668523300031910SoilPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIRSSILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPIRQ
Ga0306923_1226038413300031910SoilLPGSGERYGAGRRAVQIAKRQRRAFMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRGHAEQLLRQAIETHATAGPGNRGAAELLAVVLQSLSAIEPPTRQ
Ga0306923_1230675223300031910SoilMTDPNPNLDPDEVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0306921_1041582033300031912SoilMTDLPPNPDELDEGEQANDAAAAIAGFTLAQFAFGELIKNGILPKDHAEQMLRYAIETHATAGPGNRGAAEMVTVNASISFGFEPADDLGQLRAIG
Ga0306921_1077525013300031912SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIRNGILPKDHAEHLLRRAIETHATAGPGNRGAAELLAAVLQGLSAIQPPTRQ
Ga0306921_1127377323300031912SoilMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIRSSILARGDAEHLLKQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306921_1169839623300031912SoilMVPPPLAATVHLREIGSGPSRGPFMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHVLRHAIETHATGGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0306921_1279091413300031912SoilMTDPNPNLDPDQVDEGEQASVAAAAIAGFTLAQFAFGELIKNGILPKSHAEHLLRQAIETHATVAGPGNRGAAELLAVVLQGLSAIQPPTRQ
Ga0310916_1059554813300031942SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRQAIETHATVGLGNRGAAELLAVVLQGLSSIQPPTRQ
Ga0310916_1093092913300031942SoilMTDPDLDPDAVEEANVAAAAIAGFTLAQFALGELIKNGILPKGHAEHLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIEPPTRQ
Ga0310916_1148703113300031942SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRHAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0310909_1068361213300031947SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLA
Ga0310909_1092404523300031947SoilMTDPTPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLQSLSAIQPPTRQ
Ga0306926_1145389923300031954SoilMTDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGIVPRGGAEQLLRQAIEAHATAGPGNQAAAKLLTVVLHNLYALQSPTRQ
Ga0306922_1071917223300032001SoilMTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKGDAEHLLRQAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0318533_1101076413300032059SoilMTDPDPDLDPDPVEQANVAAAAIAGFTLAQFAFGELIKNGILPRDQAEQLLRRAIETHATAGPGNRGAAELLAVVLQSLSAIESPTRQ
Ga0306924_1129602723300032076SoilMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIKNGLLPRDHAEYLLKHAIETHATAGPGNRAAAELLAVVLQSLSAIESPTRQ
Ga0306920_10073936523300032261SoilMTDPDPDPDLVSDPDPVEQANIAAAAIAGFTLAQFAFGELIKNGILPRGDAEQLLRQAIEAHATAGPGNRAAAKLLAVVLQSLSEFQSPTRQ
Ga0306920_10163868313300032261SoilMTDPDPDPDAVEEANVAAAAIAGFTLAQFAFGELIRNGLLPRGHAEHLLKHAMETHATAGPGNRAAVELLAVVLRSLSAIESPTRQ
Ga0306920_10174195313300032261SoilMTDPNPNLDPDEVEQANVAAAAVAGFTLAQFAFGELIKNGILPKADAEHLLRQAIETHATAGPGNRGAAELLGVVLQGLSAIQPPTRQ
Ga0306920_10194571013300032261SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQFAFGELIRNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSEIQPPTRQ
Ga0306920_10209785113300032261SoilMTDPDPNLDPDAVEQANVAAAAIAGFTLAQFAFAELIKNGILPRGHAQQLLTHAIETHATAGPGNRAAAELLAVFLQSLSAIESPTRQ
Ga0306920_10243494213300032261SoilMTDPNPNLDPDEVDEVEQANVAAAAIAGFTLAQLAFGELIKNGILPKDHAEHLLRLAIETHATAGPGNRGAAELLAVVLQGLSAVQPPTRQ
Ga0335079_1041402723300032783SoilMTDPNPVDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLESLSAIQPPTRQ
Ga0335081_1023519123300032892SoilMTDPNPDLDPDEVEQANVAAAAIAGFTLAQFAFGELIKSGILAKGDAEHLLRQAIETHETAGPGNRGAAELLAVVLESLSAIQPPTRQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.