NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105573

Metagenome / Metatranscriptome Family F105573

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105573
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 57 residues
Representative Sequence MDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Number of Associated Samples 70
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 92.00 %
% of genes near scaffold ends (potentially truncated) 17.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(80.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.86%    β-sheet: 0.00%    Coil/Unstructured: 58.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF09361Phasin_2 57.00
PF03401TctC 3.00
PF03729DUF308 2.00
PF02775TPP_enzyme_C 2.00
PF13545HTH_Crp_2 1.00
PF00596Aldolase_II 1.00
PF13676TIR_2 1.00
PF04392ABC_sub_bind 1.00
PF11563Protoglobin 1.00
PF13426PAS_9 1.00
PF00581Rhodanese 1.00
PF08402TOBE_2 1.00
PF12680SnoaL_2 1.00
PF04325DUF465 1.00
PF01148CTP_transf_1 1.00
PF06724DUF1206 1.00
PF12244DUF3606 1.00
PF07681DoxX 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 3.00
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 2.00
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.00
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.00
COG4270Uncharacterized membrane proteinFunction unknown [S] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.00 %
All OrganismsrootAll Organisms34.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_100336217Not Available1392Open in IMG/M
3300003505|JGIcombinedJ51221_10215430Not Available779Open in IMG/M
3300004103|Ga0058903_1476113Not Available698Open in IMG/M
3300004117|Ga0058893_1167513Not Available570Open in IMG/M
3300004118|Ga0058886_1367603Not Available1032Open in IMG/M
3300004120|Ga0058901_1571490Not Available537Open in IMG/M
3300004120|Ga0058901_1574158Not Available780Open in IMG/M
3300004139|Ga0058897_11104726Not Available1302Open in IMG/M
3300004631|Ga0058899_10022100Not Available853Open in IMG/M
3300004631|Ga0058899_10074044Not Available1254Open in IMG/M
3300004631|Ga0058899_10204607Not Available528Open in IMG/M
3300004631|Ga0058899_12222024Not Available999Open in IMG/M
3300005538|Ga0070731_10034202All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3429Open in IMG/M
3300005538|Ga0070731_10861378Not Available601Open in IMG/M
3300005542|Ga0070732_10000109All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria75445Open in IMG/M
3300005602|Ga0070762_10031617Not Available2835Open in IMG/M
3300005602|Ga0070762_11039970Not Available563Open in IMG/M
3300005610|Ga0070763_10069651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1717Open in IMG/M
3300005921|Ga0070766_10039660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2606Open in IMG/M
3300005921|Ga0070766_10331757Not Available984Open in IMG/M
3300006028|Ga0070717_11160232Not Available703Open in IMG/M
3300006050|Ga0075028_100228521Not Available1014Open in IMG/M
3300006059|Ga0075017_101025526Not Available643Open in IMG/M
3300006086|Ga0075019_10504545Not Available750Open in IMG/M
3300006176|Ga0070765_100554154All Organisms → cellular organisms → Bacteria → Proteobacteria1082Open in IMG/M
3300006176|Ga0070765_101760163Not Available581Open in IMG/M
3300006893|Ga0073928_10786233All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860658Open in IMG/M
3300009088|Ga0099830_11508684Not Available560Open in IMG/M
3300010379|Ga0136449_101268076Not Available1152Open in IMG/M
3300011120|Ga0150983_10374847Not Available762Open in IMG/M
3300011120|Ga0150983_12023734Not Available550Open in IMG/M
3300011120|Ga0150983_12169341Not Available1009Open in IMG/M
3300011120|Ga0150983_16060401Not Available912Open in IMG/M
3300014501|Ga0182024_10102231All Organisms → cellular organisms → Bacteria → Proteobacteria4169Open in IMG/M
3300019187|Ga0184584_127944Not Available563Open in IMG/M
3300019187|Ga0184584_139836Not Available840Open in IMG/M
3300019888|Ga0193751_1006598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68606396Open in IMG/M
3300020581|Ga0210399_10040711All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3723Open in IMG/M
3300020583|Ga0210401_10105722All Organisms → cellular organisms → Bacteria2643Open in IMG/M
3300021171|Ga0210405_10081005All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2558Open in IMG/M
3300021171|Ga0210405_10109766All Organisms → cellular organisms → Bacteria2178Open in IMG/M
3300021171|Ga0210405_11325265Not Available528Open in IMG/M
3300021171|Ga0210405_11390847Not Available511Open in IMG/M
3300021178|Ga0210408_10000004All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales411559Open in IMG/M
3300021178|Ga0210408_10027629All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4496Open in IMG/M
3300021178|Ga0210408_10264880Not Available1370Open in IMG/M
3300021403|Ga0210397_10064210All Organisms → cellular organisms → Bacteria2388Open in IMG/M
3300021403|Ga0210397_11127594Not Available610Open in IMG/M
3300021404|Ga0210389_10329233All Organisms → cellular organisms → Bacteria1199Open in IMG/M
3300021404|Ga0210389_10553436Not Available905Open in IMG/M
3300021404|Ga0210389_11388250Not Available536Open in IMG/M
3300021404|Ga0210389_11429036Not Available527Open in IMG/M
3300021405|Ga0210387_11134479Not Available681Open in IMG/M
3300021405|Ga0210387_11599399Not Available555Open in IMG/M
3300021420|Ga0210394_10089537All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2659Open in IMG/M
3300021420|Ga0210394_11701741All Organisms → cellular organisms → Bacteria → Proteobacteria528Open in IMG/M
3300021432|Ga0210384_10565312Not Available1023Open in IMG/M
3300021433|Ga0210391_10627184Not Available844Open in IMG/M
3300021474|Ga0210390_10064016All Organisms → cellular organisms → Bacteria3031Open in IMG/M
3300021474|Ga0210390_11189427Not Available616Open in IMG/M
3300021475|Ga0210392_10907181Not Available659Open in IMG/M
3300021477|Ga0210398_10027597All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes4779Open in IMG/M
3300021477|Ga0210398_10530964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales957Open in IMG/M
3300021478|Ga0210402_10120363All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2373Open in IMG/M
3300022522|Ga0242659_1026143Not Available929Open in IMG/M
3300022527|Ga0242664_1158949Not Available504Open in IMG/M
3300022528|Ga0242669_1075846Not Available616Open in IMG/M
3300022557|Ga0212123_10256712All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1251Open in IMG/M
3300022731|Ga0224563_1004149Not Available1017Open in IMG/M
3300025898|Ga0207692_10171408All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300025915|Ga0207693_10353470Not Available1150Open in IMG/M
3300027439|Ga0209332_1075255Not Available611Open in IMG/M
3300027583|Ga0209527_1129073Not Available563Open in IMG/M
3300027605|Ga0209329_1131942Not Available549Open in IMG/M
3300027842|Ga0209580_10000001All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1658941Open in IMG/M
3300027855|Ga0209693_10009788All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4485Open in IMG/M
3300027869|Ga0209579_10003384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales11630Open in IMG/M
3300027869|Ga0209579_10656169Not Available569Open in IMG/M
3300027884|Ga0209275_10003232All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium6725Open in IMG/M
3300027884|Ga0209275_10429288Not Available748Open in IMG/M
3300027895|Ga0209624_10542427Not Available773Open in IMG/M
3300027898|Ga0209067_10645800Not Available610Open in IMG/M
3300027908|Ga0209006_10125877All Organisms → cellular organisms → Bacteria2260Open in IMG/M
3300027908|Ga0209006_10274482All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1445Open in IMG/M
3300028023|Ga0265357_1011484Not Available903Open in IMG/M
3300028047|Ga0209526_10489070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales804Open in IMG/M
3300028906|Ga0308309_10532007Not Available1018Open in IMG/M
3300028906|Ga0308309_11060920All Organisms → cellular organisms → Bacteria → Proteobacteria701Open in IMG/M
3300030730|Ga0307482_1056519Not Available971Open in IMG/M
3300030862|Ga0265753_1151330Not Available501Open in IMG/M
3300030998|Ga0073996_12011107Not Available976Open in IMG/M
3300031057|Ga0170834_110464816Not Available571Open in IMG/M
3300031122|Ga0170822_14064457Not Available831Open in IMG/M
3300031231|Ga0170824_117220683All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860602Open in IMG/M
3300031446|Ga0170820_10639412Not Available896Open in IMG/M
3300031474|Ga0170818_112188936All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860609Open in IMG/M
3300031753|Ga0307477_10337426Not Available1038Open in IMG/M
3300032121|Ga0316040_117399Not Available542Open in IMG/M
3300032515|Ga0348332_10299807Not Available681Open in IMG/M
3300032515|Ga0348332_10430025Not Available647Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil23.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil12.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil5.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.00%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring2.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter2.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004103Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004117Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF222 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004118Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004120Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300019187Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022731Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027583Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027898Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028023Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5Host-AssociatedOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030998Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031122Oak Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300032121Soil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10033621733300002245Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV*
JGIcombinedJ51221_1021543013300003505Forest SoilMEXRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0058903_147611323300004103Forest SoilMETRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET*
Ga0058893_116751323300004117Forest SoilMKTRHDQQKPAQGRELLESIGREIRTNIDLAEPFPDRLNELIEQLVLRIDEREKEREEV*
Ga0058886_136760313300004118Forest SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0058901_157149023300004120Forest SoilMGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDERE
Ga0058901_157415813300004120Forest SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPQRLNELIEQLMLRINEREKDPGEA*
Ga0058897_1110472623300004139Forest SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV*
Ga0058899_1002210013300004631Forest SoilMETRRHQQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV*
Ga0058899_1007404423300004631Forest SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINGREKEPEEV*
Ga0058899_1020460723300004631Forest SoilTPMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE*
Ga0058899_1222202413300004631Forest SoilMKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDERAKEPEEA*
Ga0070731_1003420243300005538Surface SoilMERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV*
Ga0070731_1086137823300005538Surface SoilMETRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0070732_10000109123300005542Surface SoilMQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE*
Ga0070762_1003161773300005602SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV*
Ga0070762_1103997023300005602SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRID
Ga0070763_1006965133300005610SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV*
Ga0070766_1003966013300005921SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA*
Ga0070766_1033175713300005921SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLR
Ga0070717_1116023223300006028Corn, Switchgrass And Miscanthus RhizosphereMETRHDQPKPSEGHELLEFIGREIKTHIDLAEPMPERLNELIEQLVLRINER
Ga0075028_10022852133300006050WatershedsMETRHDQHKPSEARKLLEFIGRNFKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV*
Ga0075017_10102552623300006059WatershedsMETRHDQQKPSRGRELLEYIGREIKTHIDLAEPIPERLNELIEQVALRINEREKEPEEV*
Ga0075019_1050454523300006086WatershedsMETRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV*
Ga0070765_10055415423300006176SoilMQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA*
Ga0070765_10176016323300006176SoilMDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV*
Ga0073928_1078623313300006893Iron-Sulfur Acid SpringQQKPSEGRRLMEIIGRDIKSHIDLAEPIPERLNELIEQLVRINEREKEPEEV*
Ga0099830_1150868423300009088Vadose Zone SoilMKTRRDQQKPSDGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRIDEREKELEK
Ga0136449_10126807613300010379Peatlands SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREK
Ga0150983_1037484723300011120Forest SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV*
Ga0150983_1202373413300011120Forest SoilRKKGRRSMETRRGKPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE
Ga0150983_1216934123300011120Forest SoilMETRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV*
Ga0150983_1606040123300011120Forest SoilMEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA*
Ga0182024_1010223153300014501PermafrostMETRRVQQKPSEGRQILDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEA*
Ga0184584_12794423300019187SoilMETQRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0184584_13983613300019187SoilMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0193751_100659823300019888SoilMETRRGRQKSAGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVQRCNEREKEPEEV
Ga0210399_1004071143300020581SoilMETRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210401_1010572233300020583SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA
Ga0210405_1008100533300021171SoilMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRIDERE
Ga0210405_1010976633300021171SoilMEMRNQQRPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210405_1132526523300021171SoilMETRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV
Ga0210405_1139084713300021171SoilQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210408_10000004503300021178SoilMKTRHDQQKPAQGRELLESIGREIRTNIDLAEPIPDRLNELIEQLVLRIDEREKEREEV
Ga0210408_1002762933300021178SoilMETRRDRQMPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRIDERETEPEEV
Ga0210408_1026488023300021178SoilMETRHNQQKPSEGRELLEFIGREFKTHIDLAEPMPERLNELIEQLVLRINEREKEPEEV
Ga0210397_1006421033300021403SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0210397_1112759413300021403SoilMERRRDQQKSSEGPQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210389_1032923323300021404SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKEPEEA
Ga0210389_1055343613300021404SoilVERRRYQQKSSEGRQFLDFIGREIKTHIDVAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0210389_1138825013300021404SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLGEPIPERLSELIEQLVRINERE
Ga0210389_1142903623300021404SoilMEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0210387_1113447913300021405SoilMEMRRDHQRSSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0210387_1159939923300021405SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIGEREKEPEEA
Ga0210394_1008953723300021420SoilMETRRGQPRPSEGRQLLESIGRDIRTHIDLAEPIPERLNELIEQLVRRCDERE
Ga0210394_1170174113300021420SoilMETRRHRQKPSAGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET
Ga0210384_1056531223300021432SoilMGTRHHQQNPVEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0210391_1062718413300021433SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRVDERGKEPEEA
Ga0210390_1006401663300021474SoilMEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGEA
Ga0210390_1118942723300021474SoilMERRRYQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIDQLVRRINEREKEPEEV
Ga0210392_1090718113300021475SoilGRTSMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA
Ga0210398_1002759743300021477SoilMETRRHRQQPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDAREKEPEEV
Ga0210398_1053096423300021477SoilMETRRHRQKPSEGRELLEFIGREIKTHIDLTEPIPERLKELTERLVRRINERET
Ga0210402_1012036313300021478SoilMDMRRDHQRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0242659_102614323300022522SoilMEMRNQQKPSEGRELLKFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKEPEEV
Ga0242664_115894913300022527SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAVPIPERLNELIEQLVRRINEREKEPEEV
Ga0242669_107584623300022528SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKD
Ga0212123_1025671223300022557Iron-Sulfur Acid SpringMATRRDRQKHSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLTQRISEIKKEPEEA
Ga0224563_100414923300022731SoilMEMRNQQKPSEGRELLEFIGRELKRDIDVAEPIPERLNELIEQLVLRINEREKDPGGA
Ga0207692_1017140813300025898Corn, Switchgrass And Miscanthus RhizosphereMKTRHDQQKPSQGRELLESIGREIRTNIDLAEPIADRLNELIEQLVLRIDEREKEPEET
Ga0207693_1035347013300025915Corn, Switchgrass And Miscanthus RhizosphereMKTRHDRQKPSQGRELLESIGREIRTNIDLAEPVPDRLNELIEQLALRIDEREKEPEET
Ga0209332_107525523300027439Forest SoilMETRRGQPRPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRRCDEREEEPEEV
Ga0209527_112907313300027583Forest SoilMQTHRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPDRLNELIEQLVRRIDEREKECEEV
Ga0209329_113194223300027605Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209580_1000000113103300027842Surface SoilMQTRHDQQKPAEGRQLLEFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKESE
Ga0209693_1000978833300027855SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPARLSELIEQLVRINEREKEPEEV
Ga0209579_1000338453300027869Surface SoilMERRRDQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVRRINEREKEPEEV
Ga0209579_1065616923300027869Surface SoilMETRNQQRPSEGRELLEFVGRELKRDIDVAEPIPERLNELIEQLMLRINEREKDPGEA
Ga0209275_1000323283300027884SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSGLIEQLVRINEREKEPEEV
Ga0209275_1042928813300027884SoilMETRRHQQKPAEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209624_1054242713300027895Forest SoilMQTRRDQHKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDERGKEPEEA
Ga0209067_1064580023300027898WatershedsMETRHDQQKPSQGRELLEYIGRDIKTHIDLAEPIPERLNELIEQLVLRINEREKEPEEV
Ga0209006_1012587723300027908Forest SoilMQTRRVQQNPSEGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLMRRIDECGKEPEEA
Ga0209006_1027448213300027908Forest SoilMETRRDRQKHSEGHRLLESIGRDIKAHIDLAEPISERLNELIEQLVRINEREKEPEEV
Ga0265357_101148423300028023RhizosphereMETRRHQQKPSEGRRLLEIIGRDIKSHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0209526_1048907023300028047Forest SoilMKTRRDRQKPSEGRQLLESIGRDIKTHIDLAEPIPKRLNELIEQLVQRIDEREKELEEV
Ga0308309_1053200733300028906SoilMQTRRDQQKPSDGRQLLDFIGREIKTHIDLAAPIPERLNELIEQLVRRIDERGK
Ga0308309_1106092023300028906SoilMQTRRDQQKPSDGRQLLEFIGREIKTHIDLAAPIPERLNELIEQLMQRIDEREKAPEEA
Ga0307482_105651923300030730Hardwood Forest SoilMKTRHDRQNPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRIDEREKEPEEV
Ga0265753_115133023300030862SoilMETRRRQQKPSEGRRLLEIIGRDIKSHIDLTEPIPERLNELIEQLVRIDEREKEPEEV
Ga0073996_1201110723300030998SoilMETRHDRQKPSGGRELLESIGREIKTHIDLAEPIPERLNELIEQLVKRCNEREKEPEEV
Ga0170834_11046481623300031057Forest SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEV
Ga0170822_1406445733300031122Forest SoilMATRRDRQKPSEGRQLLEFIGRDIKTHIDLAEPIPERLSELIEQLVRINEREKEPEEVS
Ga0170824_11722068313300031231Forest SoilLPEGQGSEKNWRTPMETRHGQKKPSEGRQLLEFIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0170820_1063941213300031446Forest SoilMETRRDHHKPSEGRQLLESIGRDIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0170818_11218893613300031474Forest SoilMQTRYDQKKPSEGRELLESIGRDIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0307477_1033742623300031753Hardwood Forest SoilMETRHKQQRASGGRELLEFIGRGIKTHIDLAEPIPERLNELIEQLVRRIDEREKEPEEV
Ga0316040_11739913300032121SoilMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLVLRINEREKDPGGA
Ga0348332_1029980723300032515Plant LitterMDTRRDRQKPSEGRQLLESIGREIKTHIDLAEPIPERLNELIEQLVRINEREKEPEEV
Ga0348332_1043002513300032515Plant LitterMETRHNQQKSSEGRQLLDFIGREIKTHIDLAEPIPERLNELIEQLERRINEREKEPEEA


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