NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105559

Metagenome / Metatranscriptome Family F105559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105559
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 50 residues
Representative Sequence MTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Number of Associated Samples 72
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 60.00 %
% of genes near scaffold ends (potentially truncated) 25.00 %
% of genes from short scaffolds (< 2000 bps) 85.00 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (83.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(43.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(78.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.81%    β-sheet: 0.00%    Coil/Unstructured: 53.19%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00296Bac_luciferase 45.00
PF00528BPD_transp_1 31.00
PF13463HTH_27 3.00
PF00005ABC_tran 3.00
PF13379NMT1_2 1.00
PF12802MarR_2 1.00
PF00583Acetyltransf_1 1.00
PF00532Peripla_BP_1 1.00
PF05598DUF772 1.00
PF01814Hemerythrin 1.00
PF01791DeoC 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 45.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms83.00 %
UnclassifiedrootN/A17.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001449|JGI20208J14878_1016860Not Available805Open in IMG/M
3300001471|JGI12712J15308_10055838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1000Open in IMG/M
3300001593|JGI12635J15846_10023615All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5007Open in IMG/M
3300002245|JGIcombinedJ26739_100372639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1308Open in IMG/M
3300002245|JGIcombinedJ26739_100683016All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia905Open in IMG/M
3300003505|JGIcombinedJ51221_10449172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia521Open in IMG/M
3300003505|JGIcombinedJ51221_10482002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia500Open in IMG/M
3300004091|Ga0062387_100100398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1555Open in IMG/M
3300004635|Ga0062388_102315778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia561Open in IMG/M
3300005537|Ga0070730_10702427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium avium complex (MAC) → Mycobacterium intracellulare641Open in IMG/M
3300005602|Ga0070762_10328997All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales969Open in IMG/M
3300005602|Ga0070762_10620390Not Available719Open in IMG/M
3300005610|Ga0070763_10254063All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia953Open in IMG/M
3300005712|Ga0070764_10183551All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1166Open in IMG/M
3300006176|Ga0070765_100951902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia812Open in IMG/M
3300006864|Ga0066797_1000537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia11339Open in IMG/M
3300009624|Ga0116105_1163818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia596Open in IMG/M
3300010867|Ga0126347_1036773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria942Open in IMG/M
3300010867|Ga0126347_1309461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria972Open in IMG/M
3300010876|Ga0126361_10062791Not Available837Open in IMG/M
3300010876|Ga0126361_10449445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria673Open in IMG/M
3300010877|Ga0126356_10314564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1020Open in IMG/M
3300010880|Ga0126350_10676840All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia564Open in IMG/M
3300010880|Ga0126350_11768086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia732Open in IMG/M
3300010880|Ga0126350_12354708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia582Open in IMG/M
3300011271|Ga0137393_10521043All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1020Open in IMG/M
3300012210|Ga0137378_10514201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1105Open in IMG/M
3300012357|Ga0137384_10921049Not Available704Open in IMG/M
3300014501|Ga0182024_10501209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1544Open in IMG/M
3300014501|Ga0182024_11492878Not Available772Open in IMG/M
3300020582|Ga0210395_11379751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300021170|Ga0210400_11467491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia542Open in IMG/M
3300021180|Ga0210396_10420430All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1174Open in IMG/M
3300021180|Ga0210396_11176925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia643Open in IMG/M
3300021181|Ga0210388_10724229Not Available865Open in IMG/M
3300021181|Ga0210388_10800990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria816Open in IMG/M
3300021401|Ga0210393_10407068All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1109Open in IMG/M
3300021402|Ga0210385_11010549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia639Open in IMG/M
3300021404|Ga0210389_10941132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia671Open in IMG/M
3300021405|Ga0210387_10128480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2149Open in IMG/M
3300021406|Ga0210386_10490703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1061Open in IMG/M
3300021406|Ga0210386_10601893All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii949Open in IMG/M
3300021407|Ga0210383_11772607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia504Open in IMG/M
3300021420|Ga0210394_11736261Not Available522Open in IMG/M
3300021474|Ga0210390_11135625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia633Open in IMG/M
3300021477|Ga0210398_10539353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria949Open in IMG/M
3300021477|Ga0210398_11535007Not Available517Open in IMG/M
3300021478|Ga0210402_11438220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia617Open in IMG/M
3300025504|Ga0208356_1000695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia8338Open in IMG/M
3300025588|Ga0208586_1072800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria758Open in IMG/M
3300026273|Ga0209881_1000405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11339Open in IMG/M
3300027067|Ga0208602_1004901All Organisms → cellular organisms → Bacteria1524Open in IMG/M
3300027089|Ga0207943_107147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia710Open in IMG/M
3300027110|Ga0208488_1009444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1972Open in IMG/M
3300027117|Ga0209732_1078873All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia574Open in IMG/M
3300027166|Ga0208729_101275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1163Open in IMG/M
3300027168|Ga0208239_1006441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1007Open in IMG/M
3300027171|Ga0207947_1003075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1029Open in IMG/M
3300027567|Ga0209115_1119076Not Available597Open in IMG/M
3300027575|Ga0209525_1153173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia526Open in IMG/M
3300027609|Ga0209221_1009717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2470Open in IMG/M
3300027652|Ga0209007_1073100All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300027676|Ga0209333_1062460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1023Open in IMG/M
3300027692|Ga0209530_1071994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia996Open in IMG/M
3300027829|Ga0209773_10395472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia574Open in IMG/M
3300027857|Ga0209166_10578522All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia572Open in IMG/M
3300027884|Ga0209275_10115162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1392Open in IMG/M
3300027895|Ga0209624_10539928Not Available775Open in IMG/M
3300027908|Ga0209006_10032065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4764Open in IMG/M
3300027908|Ga0209006_10265005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1474Open in IMG/M
3300027908|Ga0209006_10268112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1465Open in IMG/M
3300027908|Ga0209006_10899719All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria711Open in IMG/M
3300027908|Ga0209006_11035010Not Available651Open in IMG/M
3300028789|Ga0302232_10565226Not Available559Open in IMG/M
3300028877|Ga0302235_10012687All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4966Open in IMG/M
3300028877|Ga0302235_10493038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia520Open in IMG/M
3300028906|Ga0308309_11103763All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia686Open in IMG/M
3300029943|Ga0311340_10543833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1028Open in IMG/M
3300029943|Ga0311340_11182095All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium617Open in IMG/M
3300029999|Ga0311339_11538015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia590Open in IMG/M
3300030007|Ga0311338_10202971All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2283Open in IMG/M
3300030056|Ga0302181_10108088All Organisms → cellular organisms → Bacteria1371Open in IMG/M
3300030399|Ga0311353_11337762All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia586Open in IMG/M
3300030815|Ga0265746_1007616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1159Open in IMG/M
3300030815|Ga0265746_1032473Not Available677Open in IMG/M
3300031525|Ga0302326_10433433All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2022Open in IMG/M
3300031525|Ga0302326_12061600Not Available734Open in IMG/M
3300031708|Ga0310686_104480760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2817Open in IMG/M
3300031708|Ga0310686_108540291Not Available792Open in IMG/M
3300031708|Ga0310686_112748394All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia577Open in IMG/M
3300031708|Ga0310686_116522084Not Available669Open in IMG/M
3300031823|Ga0307478_10204464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1590Open in IMG/M
3300032895|Ga0335074_10053129All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5570Open in IMG/M
3300032895|Ga0335074_10078004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4443Open in IMG/M
3300032895|Ga0335074_10251180Not Available2081Open in IMG/M
3300032895|Ga0335074_10319825All Organisms → cellular organisms → Bacteria1755Open in IMG/M
3300032896|Ga0335075_10071596All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4693Open in IMG/M
3300032896|Ga0335075_10347903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1615Open in IMG/M
3300032896|Ga0335075_11052948All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia723Open in IMG/M
3300033134|Ga0335073_12162294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia501Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil25.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa11.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil8.00%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.00%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil3.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.00%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost2.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001449Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallowEnvironmentalOpen in IMG/M
3300001471Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006864Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193EnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300010867Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010877Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025588Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026273Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)EnvironmentalOpen in IMG/M
3300027067Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 (SPAdes)EnvironmentalOpen in IMG/M
3300027089Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015 (SPAdes)EnvironmentalOpen in IMG/M
3300027110Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)EnvironmentalOpen in IMG/M
3300027117Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027166Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF033 (SPAdes)EnvironmentalOpen in IMG/M
3300027168Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)EnvironmentalOpen in IMG/M
3300027171Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF039 (SPAdes)EnvironmentalOpen in IMG/M
3300027567Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027575Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027676Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027692Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028877Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030815Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20208J14878_101686023300001449Arctic Peat SoilMTQMEHNDAGARACEPELDEALARAIRLLISDAIEAGAAPDARASAA*
JGI12712J15308_1005583823300001471Forest SoilMCQAVHNREMTQMAQMERNDAGARATEPELDEALARAIRLLISDAIESAAAPDARSSAA*
JGI12635J15846_1002361523300001593Forest SoilMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDAKASAA*
JGIcombinedJ26739_10037263923300002245Forest SoilMAQMERNDAGARATEPELDEALARAIRLLISDAIESAAAPDARSSAA*
JGIcombinedJ26739_10068301613300002245Forest SoilMCQAVHNREMTQVTQMEHSDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA*
JGIcombinedJ51221_1044917213300003505Forest SoilMCQAVHNREMTQMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA*
JGIcombinedJ51221_1048200223300003505Forest SoilNDAGARATEPELDEALARAIRLLISDAIESGAAPDARSSAA*
Ga0062387_10010039833300004091Bog Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIAAGAGPDARVSAA*
Ga0062388_10231577823300004635Bog Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAATDARASAA*
Ga0070730_1070242723300005537Surface SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARASAA*
Ga0070762_1032899723300005602SoilMCQAVHNREMTQVTQIEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA*
Ga0070762_1062039023300005602SoilMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARA
Ga0070763_1025406323300005610SoilNSMCQAVHNREMTQMTQMEHNGAGARATEPELDEALARAIRLLISDAIESGAAPDARASAA*
Ga0070764_1018355123300005712SoilMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA*
Ga0070765_10095190213300006176SoilMTQMEHNGAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA*
Ga0066797_1000537113300006864SoilMDHDGKATQMDNMDAGTRVTDPELDEALARAIRLLITVAIDAGAAPNARASAA*
Ga0116105_116381823300009624PeatlandMTQMTQMEHNDVGARVTEPELDEALARAIRLLISDAIESGAASDARVSAA*
Ga0126347_103677323300010867Boreal Forest SoilMTQMTQMERNDAGARATEPELDEALVRAIRLLISDAIASGAAPDARSSAAYGR*
Ga0126347_130946123300010867Boreal Forest SoilMTQMTQMERNDAGARATEPELDDALARAIRLLISDAIALGAAPDARSSAA*
Ga0126361_1006279123300010876Boreal Forest SoilKATQMDNMDAGTRVTDPELDEALARAIRLLITVAIDAGAAPNARASAA*
Ga0126361_1044944523300010876Boreal Forest SoilMTQMAQMEHNDAGARATEPELDEALARAIRLLISDAIESGAAADARVSAA*
Ga0126356_1031456413300010877Boreal Forest SoilMCQVVHNREMTQMTQMEHSDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA*
Ga0126350_1067684023300010880Boreal Forest SoilMTQMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPGARASAA*
Ga0126350_1176808623300010880Boreal Forest SoilLDHDGKATQMDNMDAGTRVTDPELDEALARAIRLLITVAIDAGAAPNARASAA*
Ga0126350_1235470823300010880Boreal Forest SoilVHNREMTQMTQMERSDAGARATEPELDEALARAIRLLISDAIESGAAPDARSSAA*
Ga0137393_1052104323300011271Vadose Zone SoilMEHNDAATRATDPELDEALARAIRLLISDAVQSGAS
Ga0137378_1051420123300012210Vadose Zone SoilMDHMDAGTQVTDPELDEALARAIRLLISEAIDAGAASNARSSAS*
Ga0137384_1092104913300012357Vadose Zone SoilMDHMDAGTQVTDPELDEALARAIRLLISEAIDAGAASNARSTAS*
Ga0182024_1050120923300014501PermafrostMDHMDAGTQVTDPELDEALARAIRLLISEAIDADAASNARSSAS*
Ga0182024_1149287823300014501PermafrostMTQMAQMEHNDVGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA*
Ga0210395_1137975123300020582SoilMCQTVHNREMTQMTQMERNDAGARATEPELDEALARAIRLLISDAIESGAAPDARSSAA
Ga0210400_1146749123300021170SoilMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0210396_1042043023300021180SoilMCQAVHNREMTQVTQMEHNDAGARATERELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0210396_1117692513300021180SoilMCQAVHNREMTQVTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0210388_1072422913300021181SoilMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0210388_1080099023300021181SoilMTQMERNDAGARATEPELDEALARAIRLLISDAIESGAAPDARSSAA
Ga0210393_1040706823300021401SoilMTQMERNDAGARATEPELDEALARAIRLLISDAIESGAA
Ga0210385_1101054923300021402SoilMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0210389_1094113223300021404SoilMTQMEGNDAGARATEPELDEALARAIRLLISDAIALGAAPDARSSAA
Ga0210387_1012848033300021405SoilMTQMQHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0210386_1049070323300021406SoilMAQMEHNDAGARATEPELDEALARAIRLLISDAIEAGASDARASAA
Ga0210386_1060189313300021406SoilMTQMERNDAGARATEPELDEALARAIRLLISDAIES
Ga0210383_1177260723300021407SoilMEQREHNDAATRVTEPELDEALARAIRLLISDAIESGAAA
Ga0210394_1173626113300021420SoilMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPD
Ga0210390_1113562513300021474SoilMCQAVHNREMTQMTQMDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0210398_1053935323300021477SoilMCQAVHNREMTQVTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0210398_1153500723300021477SoilMCQAVHNREMTQVTQMEHNDAGARATERELDEALARAIRLLISDAIEAG
Ga0210402_1143822023300021478SoilHLCNFNSMCQTVHNREMTQMTQMEGNDAGARATEPELDEALARAIRLLISDAIALGAAPDARSSAA
Ga0208356_100069563300025504Arctic Peat SoilMTQMEHNDAGARACEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0208586_107280023300025588Arctic Peat SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAGADARASAA
Ga0209881_1000405113300026273SoilMDHDGKATQMDNMDAGTRVTDPELDEALARAIRLLITVAIDAGAAPNARASAA
Ga0208602_100490113300027067Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGGAPDARASAA
Ga0207943_10714713300027089Forest SoilAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0208488_100944433300027110Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0209732_107887323300027117Forest SoilMCQAVHNREMTQMTQMEHNDAGARATEPELDQALARAIRLLISDAIESGAAPDARVSAA
Ga0208729_10127513300027166Forest SoilMTQMDHDDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0208239_100644123300027168Forest SoilMCQAVHNREMTQVTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAAPDARASAA
Ga0207947_100307513300027171Forest SoilMCQAVHNREMTQMAQMEHNDAGARATEPELDEALARAIRLLISDAIEAGASDARASAA
Ga0209115_111907613300027567Forest SoilMCQAVHNREMTQVTQMEHSDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0209525_115317323300027575Forest SoilMCQTVHNREMTQMTQMERNDAGARATEPELDEALARAIRLLISDAIEAGAAPGARASAA
Ga0209221_100971723300027609Forest SoilMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDAKASAA
Ga0209007_107310023300027652Forest SoilMAQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARVSAA
Ga0209333_106246013300027676Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGA
Ga0209530_107199423300027692Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0209773_1039547223300027829Bog Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIAAGAGPDARVSAA
Ga0209166_1057852223300027857Surface SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARASAA
Ga0209275_1011516223300027884SoilMCQAVHNREMTQVTQIEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0209624_1053992813300027895Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARVSA
Ga0209006_1003206523300027908Forest SoilMAQMERNDAGARATEPELDEALARAIRLLISDAIESAAAPDARSSAA
Ga0209006_1026500533300027908Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAA
Ga0209006_1026811233300027908Forest SoilGARATEPELDEALARAIRLLISDAIESGAAPDARASAA
Ga0209006_1089971923300027908Forest SoilMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARVSIA
Ga0209006_1103501023300027908Forest SoilMTQMEHNTATPRATEPELDEALARAIRLLISDAIESGAAPDARASAA
Ga0302232_1056522623300028789PalsaMEHMDAGAQVTDPDLDEALARAIRMLIFTAVESGTAPNAR
Ga0302235_1001268773300028877PalsaMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDARVSAA
Ga0302235_1049303823300028877PalsaQMEHMDAGAQVTDPDLDEALARAIRMLIFTAVESGTAPNAR
Ga0308309_1110376313300028906SoilMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0311340_1054383323300029943PalsaMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDARASAA
Ga0311340_1118209523300029943PalsaMTQIEHNDAGARATEPELDEALARAIRLLISDAIASGAAPDARAVCR
Ga0311339_1153801523300029999PalsaMCQAVHNREMTQMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDARVSAA
Ga0311338_1020297143300030007PalsaRSVREHELHLCNFNSMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARVSAA
Ga0302181_1010808823300030056PalsaHLCNFNSMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARASAA
Ga0311353_1133776223300030399PalsaMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIESGAASDARASAA
Ga0265746_100761623300030815SoilMTQIDHNDAGARATEPELDEALARAIRLLISDAIEAGAAPDARVSAA
Ga0265746_103247313300030815SoilMTQMEHNDTGARATEPELDEALARAIRLLISDAIESGDAADARSSAA
Ga0302326_1043343313300031525PalsaEHELHLCNFNSMCQAVHNREMTQMTQMEHNDAGARATEPELDQALARAIRLLISDAIEAGAAPDARVSAA
Ga0302326_1206160023300031525PalsaMTQMEHDDAGARATEPELDEALARAIRLLISDAIQSGAAPDARSSVV
Ga0310686_10448076033300031708SoilMAQMEHKDGGARATEPELDEALARAIRLLISDAIEAGAASDARASVG
Ga0310686_10854029113300031708SoilMCQAVHNREMTQMTQMEHNDAGARASEPELDEALARAIRLLISDAIEAGAAPDARSSAA
Ga0310686_11274839413300031708SoilRSVREHELHLCNFNSMCQAVHNREMTQMTQMEHNDAGARATEPELDEALARAIRLLISDAIEAGAGPDARVSAA
Ga0310686_11652208423300031708SoilMTQMENNDAGARATEPELDQALARAIRLLISDAIEAGAAPDARVSAA
Ga0307478_1020446423300031823Hardwood Forest SoilMAQMEHKDAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0335074_1005312943300032895SoilMCQAVHNREMTQVTQMEHSDAGARATEPELDEALARAIRLLISDAIEAGAAPDARVSAA
Ga0335074_1007800443300032895SoilMTQMEHNGAGARATEPELDEALARAIRLLISDAIEAGAAPDAKASAA
Ga0335074_1025118023300032895SoilMAQMEHKDAGARATEPELDEALARAIRLLISDAIEAGAAPDARVSAA
Ga0335074_1031982523300032895SoilMAQMQNKDAGARVTEPELDEALARAIRLLISDAIEAGAAADGRVSAA
Ga0335075_1007159663300032896SoilMAQMEHKDAGARATEPELDEALARAIRLLISDAIEAGAAPDARASAA
Ga0335075_1034790313300032896SoilMAQMEHKDDGARATEPELDEALARAIRLLISDAIEAGAADARASAA
Ga0335075_1105294813300032896SoilCNFKAMCQTVHNREMTQMAQMQNKEAGARATEPELDEALARAIRLLISDAIESGAADGRVSAL
Ga0335073_1216229413300033134SoilNKDAGARVTEPELDEALARAIRLLISDAIEAGAAADGRVSAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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