NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105281

Metagenome / Metatranscriptome Family F105281

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105281
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 58 residues
Representative Sequence VRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGTSRERLVSIAEGALR
Number of Associated Samples 89
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 4.00 %
% of genes from short scaffolds (< 2000 bps) 33.00 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(41.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.53%    β-sheet: 11.63%    Coil/Unstructured: 48.84%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF00156Pribosyltran 30.00
PF03631Virul_fac_BrkB 15.00
PF00929RNase_T 5.00
PF00216Bac_DNA_binding 4.00
PF01725Ham1p_like 2.00
PF00676E1_dh 1.00
PF00117GATase 1.00
PF03725RNase_PH_C 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 15.00
COG0776Bacterial nucleoid DNA-binding protein IHF-alphaReplication, recombination and repair [L] 4.00
COG0127Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase familyNucleotide transport and metabolism [F] 2.00
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 1.00
COG0689Ribonuclease PHTranslation, ribosomal structure and biogenesis [J] 1.00
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 1.00
COG1185Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)Translation, ribosomal structure and biogenesis [J] 1.00
COG2123Exosome complex RNA-binding protein Rrp42, RNase PH superfamilyIntracellular trafficking, secretion, and vesicular transport [U] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.00 %
All OrganismsrootAll Organisms19.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000363|ICChiseqgaiiFebDRAFT_10916935Not Available578Open in IMG/M
3300003998|Ga0055472_10075365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium904Open in IMG/M
3300005093|Ga0062594_101353377Not Available719Open in IMG/M
3300005328|Ga0070676_10016453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4090Open in IMG/M
3300005328|Ga0070676_11007115Not Available626Open in IMG/M
3300005329|Ga0070683_100531060All Organisms → cellular organisms → Bacteria1124Open in IMG/M
3300005334|Ga0068869_101807479Not Available547Open in IMG/M
3300005338|Ga0068868_101401726Not Available652Open in IMG/M
3300005840|Ga0068870_10483008Not Available822Open in IMG/M
3300006358|Ga0068871_100972432Not Available789Open in IMG/M
3300006852|Ga0075433_11545832Not Available573Open in IMG/M
3300009868|Ga0130016_10342966All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1020Open in IMG/M
3300009870|Ga0131092_10000148All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria148150Open in IMG/M
3300009870|Ga0131092_10789911Not Available794Open in IMG/M
3300009873|Ga0131077_10013718All Organisms → cellular organisms → Bacteria15340Open in IMG/M
3300010397|Ga0134124_10130211All Organisms → cellular organisms → Bacteria2224Open in IMG/M
3300011333|Ga0127502_10714640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium979Open in IMG/M
3300012908|Ga0157286_10018177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1496Open in IMG/M
3300012943|Ga0164241_10462766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium912Open in IMG/M
3300012943|Ga0164241_11052012Not Available598Open in IMG/M
3300012943|Ga0164241_11175327Not Available566Open in IMG/M
3300012985|Ga0164308_10297680Not Available1280Open in IMG/M
3300014272|Ga0075327_1195399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium644Open in IMG/M
3300015371|Ga0132258_10064362All Organisms → cellular organisms → Bacteria8468Open in IMG/M
3300015373|Ga0132257_100552747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1418Open in IMG/M
3300018481|Ga0190271_10569633Not Available1249Open in IMG/M
3300018481|Ga0190271_10845715Not Available1039Open in IMG/M
3300019356|Ga0173481_10055750All Organisms → cellular organisms → Bacteria1377Open in IMG/M
3300023266|Ga0247789_1016307Not Available1214Open in IMG/M
3300025792|Ga0210143_1065238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium654Open in IMG/M
3300025899|Ga0207642_10185711Not Available1137Open in IMG/M
3300025907|Ga0207645_10260877All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1148Open in IMG/M
3300025908|Ga0207643_10277822Not Available1038Open in IMG/M
3300025917|Ga0207660_10986261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium687Open in IMG/M
3300026121|Ga0207683_11814999Not Available559Open in IMG/M
3300027886|Ga0209486_10248922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1026Open in IMG/M
3300031226|Ga0307497_10082595Not Available1212Open in IMG/M
3300031938|Ga0308175_101234525All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium832Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere6.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere6.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.00%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere4.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.00%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.00%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater2.00%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge2.00%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.00%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.00%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001989Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5Host-AssociatedOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300003998Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2EnvironmentalOpen in IMG/M
3300004013Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006603Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009868Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plantEngineeredOpen in IMG/M
3300009870Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plantEngineeredOpen in IMG/M
3300009873Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plantEngineeredOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300011107Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300011333Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012490Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610Host-AssociatedOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014272Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1EnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300022889Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4EnvironmentalOpen in IMG/M
3300022903Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6EnvironmentalOpen in IMG/M
3300023071Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5EnvironmentalOpen in IMG/M
3300023079Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L156-409C-4EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300025792Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A4-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027437Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1091693523300000363SoilVRLVLLAAAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGASRQRLVAIAEGALR*
JGI24739J22299_1002496933300001989Corn RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELXLGEGSSRERLVAIAEGALR*
JGI24738J21930_1015963923300002075Corn RhizosphereVXRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0055472_1007536533300003998Natural And Restored WetlandsVKLVLLAAAAVAWILWRRRRADGSHVVVAWQDGSELELRADSPEHDRLVSVAGRAFA*
Ga0055465_1017873013300004013Natural And Restored WetlandsVRLFLLAAAAVGAWLFLRRRRAADGPHVVVAWADGSQLELGEGASRERLAAIAEGALR*
Ga0062594_10135337713300005093SoilMRLVLLAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0070658_1003985343300005327Corn RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR*
Ga0070676_1001645353300005328Miscanthus RhizosphereVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0070676_1100711523300005328Miscanthus RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGSSRERLVAIAEGALR*
Ga0070683_10053106033300005329Corn RhizosphereVRLVLLASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGASRQRLVAIAEGALR*
Ga0068869_10180747913300005334Miscanthus RhizosphereVRLVLLASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGASRQRLVA
Ga0068868_10140172613300005338Miscanthus RhizosphereMRLVLLAAAAVAAWLVLRRRRSGDERHVAVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0070661_10135079623300005344Corn RhizosphereVRLVLLASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGTSRQRLVAIAEGALR*
Ga0070692_1084118023300005345Corn, Switchgrass And Miscanthus RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGSSRERLVAIAEGALS*
Ga0070673_10194067913300005364Switchgrass RhizosphereAPDRGGRRVRLVLLAAAAVGAWLFLRRRRSSDERHVVVGWADGSELELGEGTSRERLVSIAEGALR*
Ga0070659_10178006713300005366Corn RhizosphereVRLVLVASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGTSRQRLVAIAEGALR*
Ga0070662_10197136123300005457Corn RhizosphereMRLVLLAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGTSRERLVSIAEGALR*
Ga0068853_10225648323300005539Corn RhizosphereLVLLAAAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0070696_10004856413300005546Corn, Switchgrass And Miscanthus RhizosphereMRLVLLVGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0070664_10123441023300005564Corn RhizosphereAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0068856_10026913933300005614Corn RhizosphereVRRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0070702_10090966023300005615Corn, Switchgrass And Miscanthus RhizosphereMRLVLLAGAAVAAWLVLRRRRSGDERHVAVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0068859_10185031623300005617Switchgrass RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGTSRERLVSIAEGALR*
Ga0068870_1048300833300005840Miscanthus RhizosphereVRLVLLAAAAVGAWLLLRRRRTGDERHVVVGWADGAELELGEGTSRQRLVSIAEGALR*
Ga0075432_1009064833300006058Populus RhizosphereMRLVLLAAAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR*
Ga0068871_10097243223300006358Miscanthus RhizosphereVRRVLLAAAVVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0074064_1159213323300006603SoilVRLVLLAAAAVGAWLFLRRRRSGDERHVVVGWADGSELELGAGMSRERLVSIAESALR*
Ga0079220_1170429123300006806Agricultural SoilVRLVLLAAAAVGAWLVLRRRRAADRRHVVVGWDDGSELELGEGASRDRLLAIAEDAFR*
Ga0075433_1154583223300006852Populus RhizosphereVRLVLLAAAAVGAWLFLRRRRSSDERHVVVGWADGSELELGEGTSRERLVSIAEGALR*
Ga0105250_1016664433300009092Switchgrass RhizosphereAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0105237_1247303613300009545Corn RhizosphereVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLAS
Ga0130016_1034296633300009868WastewaterVRFLVLAAAGVGAWLLLRRRRSDERRVVVGWQDGSELELLPETPERERLLAIAEDAVP*
Ga0131092_10000148103300009870Activated SludgeMRLLLLAAAAVGAWLLLRRRRGDDPRVVVGWSDGSELELGEGTPGRGQLLALAEDVLP*
Ga0131092_1078991123300009870Activated SludgeVRLVLLVAVAAGTWLFLRRRRTADERHVVVGWVDGSELELGDGTARERLLAIADGALR*
Ga0131077_1001371893300009873WastewaterVRLVLLAAAAVVAWLVVRRRRGADERRVVVGWADGSELELGDGTSRERLVAIAESALR*
Ga0134124_1013021143300010397Terrestrial SoilMRLVLLAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0151490_124058113300011107SoilTGPDRGGRRVRLVLLAAAAVGAWLLLRRRRSGDERHVVIGWADGSELELGQGTSRERLVSIAEGALR*
Ga0127502_1071464023300011333SoilVRALLAVGLAALGAWLVLRRRSEDERHVVVAWADGSELELGAGSPVRDQLVSLAEGTLR*
Ga0157322_101090823300012490Arabidopsis RhizosphereRLVLLAAAAVGAWLFLRRRRSSDEQHVVVGWADGSELELGEGTSRERLVSIAEGALR*
Ga0157351_106540523300012501Unplanted SoilDGTAPDRGGRRVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0157285_1021489123300012897SoilVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELALGEGSSRERLVAIAE
Ga0157286_1001817733300012908SoilVRLVLVASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGASRQRLVAIAEGALR*
Ga0157306_1017941223300012912SoilVRLVLLASAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR*
Ga0157297_1001961233300012914SoilVRLVLLAAAAVGAWLFLRRRRAADGPHVVVAWADGSQLELGEGASRERLAAIAEGALR*
Ga0157302_1018781323300012915SoilVRLVLVAAAAVGAWLFLRRRRTADERHVAIGWADGSELELGEGASRERLVAIAEEALR*
Ga0164241_1046276623300012943SoilVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGASRERLVAIADGALR*
Ga0164241_1050167623300012943SoilVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWTDGSELELGEGASRERLVGIAEGVLR*
Ga0164241_1101089223300012943SoilMRFVLLGVAAVGAWLFLRRRRTADERHVVVGWADGSELELGDGTARERLVAIAEGALR*
Ga0164241_1105201233300012943SoilVRVVLLAAAAVGAWLFLRRRRTADVRRVVVGWADGSELELGDGTSRERL
Ga0164241_1117532713300012943SoilVRLVLLAAAAVGAWLFLRRRRTADERHVVVGWADGSELELGEGASRERLVAIAEGVLR*
Ga0164298_1059058233300012955SoilVRRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGQGTSREHLVSIAEGALR*
Ga0164308_1029768033300012985SoilVRRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGDGPSRERLASIAEGALR*
Ga0164307_1049107923300012987SoilVKRVLLAAAAVGAWLLLRRRRSGDERHVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0157374_1066761923300013296Miscanthus RhizosphereVNSVLLAAAAVGAWLFLRRRRSSDERHVVVGWADGSELELGEGPSRERLASIAEGALR*
Ga0075327_119539923300014272Natural And Restored WetlandsVKLVLLAAAAVAWILWRRRRADGSHVVVAWQDGSELELRAGSPEHDRLVSVAGRAFA*
Ga0157376_1024515813300014969Miscanthus RhizosphereVRLVLLAAAAVGAWLFLRRRRSSDERHVVVGWADGSELELGEGTSRERLVSIAEG
Ga0132258_1006436243300015371Arabidopsis RhizosphereVRLVLLVAAAVGAWLFLRRRRGGEDCVVVAWADGSELELGDGVTERERLVSIAEGALR*
Ga0132258_1136843323300015371Arabidopsis RhizosphereVRLVLLAAAAVGAWLFLRRRRTADERHVVIGWADGSELELGEGASRERLVAIAEEALR*
Ga0132257_10055274733300015373Arabidopsis RhizosphereVRLVLLVAAAVGAWLFLRRRRGGEDCVVVAWADGSELELGDGVTERERLVSIAEGALQ*
Ga0132257_10082288733300015373Arabidopsis RhizosphereVRRVLLAAAAVGAWLLLRRRRSGDERNVVVGWPDGSELELGEGPSRERLASIAEGALR*
Ga0163161_1194178013300017792Switchgrass RhizosphereRRLRPADGLAPDRGGRRVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR
Ga0190271_1056963323300018481SoilVRALFAVGLAAVGAWLVLRRRSEDERHVVVAWEDGSELELGLGSPVRDELISLAEGALR
Ga0190271_1084571523300018481SoilVRALLAVGLAALGAWLVLRRRSEDERHVVVAWADGSELELGAGSPVRDQLVSLAEGALR
Ga0173481_1005575033300019356SoilVRLVLLASAAVGAWLLLRRRRTGDERQVVVGWADGAELELGEGASRQRLVAIAEGALR
Ga0173482_1008573923300019361SoilVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGSSRERLVAIAEGALR
Ga0247785_101387223300022889SoilGTAPDRGGRRVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0247774_105959633300022903Plant LitterVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAI
Ga0247752_100627743300023071SoilVRLVLLAAAAVGAWLFLRRRRAADGPHVVVAWADGSQLELGEGASRERLAAIAEGALR
Ga0247758_109738723300023079Plant LitterVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELALGEGSSRERLVAIAEGALR
Ga0247800_106247223300023263SoilVRLVLVAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR
Ga0247789_101630723300023266SoilVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR
Ga0247794_1016225423300024055SoilRVRLVLLAAAAVGAWLFLRRRRAADGPHVVVAWADGSQLELGEGASRERLAAIAEGALR
Ga0210143_106523833300025792Natural And Restored WetlandsVKLVLLAAAAVAWILWRRRRADGSHVVVAWQDGSELELRADSPEHDRLVSVAGRAFA
Ga0207642_1018571133300025899Miscanthus RhizosphereVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0207647_1005468123300025904Corn RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0207645_1026087733300025907Miscanthus RhizosphereVRLVLLAAAAVGAWLLLRRRRTGDERHVVVGWADGAELELGEGTSRQRLVSIAEGALR
Ga0207643_1027782223300025908Miscanthus RhizosphereMRLVLLAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR
Ga0207707_1062276313300025912Corn RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGSSRERLVAIAEGA
Ga0207660_1098626133300025917Corn RhizosphereMRLVLLAAAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERL
Ga0207660_1151699813300025917Corn RhizosphereRMRLVLLAGAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR
Ga0207646_1169475423300025922Corn, Switchgrass And Miscanthus RhizospherePDRGGRRVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR
Ga0207694_1062623913300025924Corn RhizosphereRRVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0207659_1031193533300025926Miscanthus RhizosphereMRLVLLAGAAVAAWLVLRRRRSGDERHVAVGWADGSELELGEGRSRERLVSIAEGALR
Ga0207686_1000688473300025934Miscanthus RhizosphereVRRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0207669_1003532663300025937Miscanthus RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGTSRERLVSIAEGALR
Ga0207704_1007091843300025938Miscanthus RhizosphereGLAPDRGGRRVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLVAIAEGALR
Ga0207679_1006409753300025945Corn RhizosphereVRLVLVASAAVGAWLLLRRRRTGDERQVVVGWADGAELDLGEGTSRQRLVAIAEGALR
Ga0207674_1013228723300026116Corn RhizosphereVRLVLLAAAAVGAWLLLRRRRTGDERHVVVGWADGAELELGEGTSRQRLVAIAEGALR
Ga0207683_1181499913300026121Miscanthus RhizosphereMRLVLLAAAAVAAWLVLRRRRSGDERHVVVGWADGSELELGEGRSRERLVSIAEGALR
Ga0207516_100388613300026905SoilVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELELGEGSSRERLVAIAEGALR
Ga0207476_10812113300027437SoilGGRRVKRVLLAAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0209486_1024892233300027886Agricultural SoilVRALLAVGLAALGAWLVLRRRSEDERHVVVAWADGSELELGAGSPVRDQLVSLAEGTLR
Ga0268264_1244845723300028381Switchgrass RhizosphereVRLVLLAAAAVGAWLFLRRRRAADERHVVVGWADGSELVLGEGSSRERLGAIAEGALR
Ga0247820_1008375013300028597SoilERAAAVGAWLLLRRRRSGDERNVVVGWADGSELELGEGPSRERLASIAEGALR
Ga0307497_1008259523300031226SoilVRLVLLAAAAVGAWLLLRRRRADEHRVVVAWADGSELELRDGMPERERLVAIAEGALR
Ga0307406_1023549633300031901RhizosphereVRLVVLAAAAVGAWLFLRRRRTADERHVVVGWADGSELELGEGASRERLVAIAEGVLR
Ga0308175_10102469123300031938SoilVRLVLLAAAAVGAWLFLRRRRTANERHVVVGWTDGSELELGEGASRERLVGIAEGVLR
Ga0308175_10123452533300031938SoilVRVVLLVAAAVGAWLFLRRRRTADVRRVVVGWADGSELELGDGTSRERLVAIAEDALR
Ga0310906_1104555623300032013SoilVRLVLLAAAAVGAWLLLRRRRTGDERHVVVEWADGAELELGEGTSRQRLVSIAEGALR
Ga0310810_1046013333300033412SoilVRLFLLAAAAVGAWLFLRRRRAADGPHVVVAWADGSQLELGEGASRERLAAIAEGALR


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