NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105267

Metagenome Family F105267

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105267
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 43 residues
Representative Sequence ERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Number of Associated Samples 66
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.00 %
% of genes from short scaffolds (< 2000 bps) 92.00 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (62.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(35.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.83%    β-sheet: 23.61%    Coil/Unstructured: 55.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF01872RibD_C 7.00
PF12680SnoaL_2 4.00
PF07969Amidohydro_3 2.00
PF12697Abhydrolase_6 2.00
PF00561Abhydrolase_1 2.00
PF06441EHN 1.00
PF00293NUDIX 1.00
PF01523PmbA_TldD 1.00
PF07228SpoIIE 1.00
PF05598DUF772 1.00
PF04542Sigma70_r2 1.00
PF01738DLH 1.00
PF04954SIP 1.00
PF01609DDE_Tnp_1 1.00
PF08309LVIVD 1.00
PF00589Phage_integrase 1.00
PF00801PKD 1.00
PF05694SBP56 1.00
PF01850PIN 1.00
PF03372Exo_endo_phos 1.00
PF00248Aldo_ket_red 1.00
PF13460NAD_binding_10 1.00
PF02417Chromate_transp 1.00
PF13535ATP-grasp_4 1.00
PF03706LPG_synthase_TM 1.00
PF01726LexA_DNA_bind 1.00
PF08240ADH_N 1.00
PF07690MFS_1 1.00
PF01391Collagen 1.00
PF03733YccF 1.00
PF08530PepX_C 1.00
PF01370Epimerase 1.00
PF01425Amidase 1.00
PF06026Rib_5-P_isom_A 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 7.00
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 7.00
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.00
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.00
COG2059Chromate transport protein ChrAInorganic ion transport and metabolism [P] 1.00
COG2375NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domainsInorganic ion transport and metabolism [P] 1.00
COG2936Predicted acyl esteraseGeneral function prediction only [R] 1.00
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 1.00
COG3293TransposaseMobilome: prophages, transposons [X] 1.00
COG3304Uncharacterized membrane protein YccF, DUF307 familyFunction unknown [S] 1.00
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 1.00
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.00
COG5276Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domainFunction unknown [S] 1.00
COG5421TransposaseMobilome: prophages, transposons [X] 1.00
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 1.00
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 1.00
COG0120Ribose 5-phosphate isomeraseCarbohydrate transport and metabolism [G] 1.00
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 1.00
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 1.00
COG0392Predicted membrane flippase AglD2/YbhN, UPF0104 familyCell wall/membrane/envelope biogenesis [M] 1.00
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.00
COG05962-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase foldCoenzyme transport and metabolism [H] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.00 %
UnclassifiedrootN/A38.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459013|GO6OHWN01DODY4Not Available511Open in IMG/M
2170459013|GO6OHWN02FHWRTNot Available528Open in IMG/M
3300002568|C688J35102_118544196All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300002568|C688J35102_118640649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria580Open in IMG/M
3300002568|C688J35102_119999495Not Available841Open in IMG/M
3300003321|soilH1_10152134Not Available1336Open in IMG/M
3300004081|Ga0063454_101388527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria594Open in IMG/M
3300004081|Ga0063454_101625648Not Available559Open in IMG/M
3300004156|Ga0062589_100458001All Organisms → cellular organisms → Bacteria1059Open in IMG/M
3300004156|Ga0062589_101194938All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria727Open in IMG/M
3300004463|Ga0063356_104373515Not Available608Open in IMG/M
3300005332|Ga0066388_100279498All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album2312Open in IMG/M
3300005543|Ga0070672_101179063Not Available682Open in IMG/M
3300005561|Ga0066699_11227025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300005562|Ga0058697_10704152Not Available538Open in IMG/M
3300005834|Ga0068851_10516834Not Available718Open in IMG/M
3300005981|Ga0081538_10148222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1068Open in IMG/M
3300005981|Ga0081538_10261291All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300005981|Ga0081538_10361529Not Available525Open in IMG/M
3300006038|Ga0075365_11338943All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300006051|Ga0075364_10788271All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales648Open in IMG/M
3300006051|Ga0075364_10805072Not Available640Open in IMG/M
3300006358|Ga0068871_101977964Not Available555Open in IMG/M
3300006800|Ga0066660_11181766All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia601Open in IMG/M
3300006844|Ga0075428_100743391Not Available1044Open in IMG/M
3300007076|Ga0075435_101469631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum597Open in IMG/M
3300009093|Ga0105240_12023133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium598Open in IMG/M
3300009789|Ga0126307_10062521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2921Open in IMG/M
3300009789|Ga0126307_10471251Not Available1013Open in IMG/M
3300009789|Ga0126307_10478365Not Available1005Open in IMG/M
3300009789|Ga0126307_11065292Not Available654Open in IMG/M
3300009789|Ga0126307_11093453All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia645Open in IMG/M
3300009789|Ga0126307_11226426Not Available607Open in IMG/M
3300009789|Ga0126307_11441394All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300009789|Ga0126307_11600022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. TF02-7529Open in IMG/M
3300009789|Ga0126307_11782306Not Available501Open in IMG/M
3300009840|Ga0126313_10369461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium1134Open in IMG/M
3300009840|Ga0126313_11375060Not Available585Open in IMG/M
3300010036|Ga0126305_10512869Not Available800Open in IMG/M
3300010037|Ga0126304_10007926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5664Open in IMG/M
3300010038|Ga0126315_10515377Not Available764Open in IMG/M
3300010038|Ga0126315_10536213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium750Open in IMG/M
3300010038|Ga0126315_10873006Not Available596Open in IMG/M
3300010039|Ga0126309_10465421All Organisms → cellular organisms → Bacteria → Terrabacteria group771Open in IMG/M
3300010039|Ga0126309_10554264Not Available716Open in IMG/M
3300010040|Ga0126308_10817702Not Available646Open in IMG/M
3300010040|Ga0126308_10951740Not Available600Open in IMG/M
3300010041|Ga0126312_10011958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5817Open in IMG/M
3300010045|Ga0126311_10523227All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria931Open in IMG/M
3300010045|Ga0126311_11135499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium644Open in IMG/M
3300010166|Ga0126306_10337987Not Available1167Open in IMG/M
3300010166|Ga0126306_11565482Not Available548Open in IMG/M
3300010397|Ga0134124_13003393All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus515Open in IMG/M
3300010403|Ga0134123_10190077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1738Open in IMG/M
3300012204|Ga0137374_10740747Not Available734Open in IMG/M
3300012212|Ga0150985_109039197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2120Open in IMG/M
3300012355|Ga0137369_10170736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1708Open in IMG/M
3300012355|Ga0137369_10406213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella qitaiheensis981Open in IMG/M
3300012355|Ga0137369_11131169Not Available509Open in IMG/M
3300012492|Ga0157335_1043994All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300012904|Ga0157282_10061515All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium951Open in IMG/M
3300012977|Ga0134087_10126829All Organisms → cellular organisms → Bacteria → Terrabacteria group1091Open in IMG/M
3300014326|Ga0157380_12556326Not Available577Open in IMG/M
3300015077|Ga0173483_10472039All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300017965|Ga0190266_11303428Not Available510Open in IMG/M
3300018422|Ga0190265_10337945All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1589Open in IMG/M
3300018429|Ga0190272_13146495All Organisms → cellular organisms → Bacteria → Terrabacteria group513Open in IMG/M
3300018432|Ga0190275_10295699All Organisms → cellular organisms → Bacteria1585Open in IMG/M
3300018432|Ga0190275_12897736Not Available555Open in IMG/M
3300018476|Ga0190274_11904734Not Available690Open in IMG/M
3300018481|Ga0190271_10150948All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_82243Open in IMG/M
3300018481|Ga0190271_11942527All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300018481|Ga0190271_13170098Not Available551Open in IMG/M
3300027809|Ga0209574_10076669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia907Open in IMG/M
3300028379|Ga0268266_12107860All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Seohaeicola → Seohaeicola zhoushanensis537Open in IMG/M
3300028771|Ga0307320_10078167All Organisms → cellular organisms → Bacteria → Terrabacteria group1242Open in IMG/M
3300028782|Ga0307306_10080686All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia847Open in IMG/M
3300028791|Ga0307290_10102273All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1045Open in IMG/M
3300028802|Ga0307503_10333291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria772Open in IMG/M
3300028807|Ga0307305_10175600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia987Open in IMG/M
3300028814|Ga0307302_10491360All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria609Open in IMG/M
3300028819|Ga0307296_10054724All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2110Open in IMG/M
3300028875|Ga0307289_10354784All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium603Open in IMG/M
3300028884|Ga0307308_10086464All Organisms → cellular organisms → Bacteria1488Open in IMG/M
3300028885|Ga0307304_10088613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides1217Open in IMG/M
3300030006|Ga0299907_10054000All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3207Open in IMG/M
3300030006|Ga0299907_10292300Not Available1331Open in IMG/M
3300030514|Ga0268253_10109009All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300031228|Ga0299914_10480535All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1075Open in IMG/M
3300031228|Ga0299914_10978275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia692Open in IMG/M
3300031229|Ga0299913_10969690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium818Open in IMG/M
3300031229|Ga0299913_11782661Not Available564Open in IMG/M
3300031229|Ga0299913_11847328Not Available552Open in IMG/M
3300031824|Ga0307413_10862073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium766Open in IMG/M
3300031852|Ga0307410_10219687All Organisms → cellular organisms → Bacteria1461Open in IMG/M
3300031852|Ga0307410_11563055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus582Open in IMG/M
3300032002|Ga0307416_101789642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CWNU-1718Open in IMG/M
3300032002|Ga0307416_103849352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium503Open in IMG/M
3300032013|Ga0310906_10194164Not Available1226Open in IMG/M
3300032126|Ga0307415_101493292All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter646Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil25.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil23.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere6.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil5.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.00%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere3.00%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere3.00%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave3.00%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.00%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil2.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.00%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.00%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459013Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cmEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003321Sugarcane bulk soil Sample H1EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006051Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012492Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610Host-AssociatedOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300027809Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030514Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N57_037031202170459013Grass SoilERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
N57_048087402170459013Grass SoilLADRLREGGFSVDRVLVDDLRPVPAVCVTGRPQGGRT
C688J35102_11854419613300002568SoilERARDLGNELADRLREGGFSVDKVLVEDLRPVPAVCAIGRPQGG*
C688J35102_11864064923300002568SoilAQDLGNELADRLRGGGFSVDRVLVEDLRPVPAVCVIGRPQGG*
C688J35102_11999949513300002568SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG*
soilH1_1015213433300003321Sugarcane Root And Bulk SoilDLGNALADRLRQGGFSVDRVLVEDLRPVPAVCAIGRPQGG*
Ga0063454_10138852713300004081SoilERARDLGNELADRLREGGFCVDRVLVEDLRPVPAVCVVGRPGGG*
Ga0063454_10162564823300004081SoilAPERAGDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG*
Ga0062589_10045800133300004156SoilRHYAPERARDLGNELADRLREGGFSLDRVLVEDLRPVPAVCAIGRPRGG*
Ga0062589_10119493813300004156SoilSAPERVRDLGNELADRLREGGFVVERVLVEGVRPVPAVCVMGRPEGN*
Ga0063356_10437351523300004463Arabidopsis Thaliana RhizosphereDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGRSTSRASAIA*
Ga0066388_10027949833300005332Tropical Forest SoilWAPERARDLGNELAERLREGGFSVDSVLVEDLRPVPAVCAMGRPQGG*
Ga0070672_10117906313300005543Miscanthus RhizosphereLADRLREGGLSIDRVLVEDLRPVLAACVIGRPQGR*
Ga0066699_1122702523300005561SoilPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0058697_1070415223300005562AgaveRDLGNELADRLREGGFSVDRVLVENLRPVPAVCAMGRPQGG*
Ga0068851_1051683433300005834Corn RhizosphereAPERARDLGNELADRLREGGLSIDRVLVEDLRPVLAACVIGRPQGR*
Ga0081538_1014822213300005981Tabebuia Heterophylla RhizosphereRARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGKSS*
Ga0081538_1026129123300005981Tabebuia Heterophylla RhizospherePERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQRKSSSA*
Ga0081538_1036152913300005981Tabebuia Heterophylla RhizosphereSTSTLSTENPPSRHFAPERARDLGNELADRLREGGFSVDSVLVEDLRPVPAVCAMGRPQDG*
Ga0075365_1133894313300006038Populus EndosphereSAPERARDLGNDLADRLREGGFSVDRVLVEDLRPVPAVCAIGRPHCGS*
Ga0075364_1078827123300006051Populus EndosphereRHFTPEGARDLGDELSGRLRLGGFSIERVLVEELRPVPAVCVMGRPEDG*
Ga0075364_1080507213300006051Populus EndosphereDARHFTPELAPELGGELADRLREGGFSVDTVLVEDLRPVPAVCAIGRPRTVVSRTRRS*
Ga0068871_10197796413300006358Miscanthus RhizosphereAPERARDLGNELADRLREGGLSIDRVLVEDLRPVLAACVMGRPQGR*
Ga0066660_1118176613300006800SoilDARHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0075428_10074339113300006844Populus RhizosphereLADRLREGGFSVDRVLVQDLRPVPAVCAIGRPAGSTP*
Ga0075435_10146963123300007076Populus RhizosphereELADRLRESGFSVDGVLVEDLRPVPAVCAMGRPQGG*
Ga0105240_1202313313300009093Corn RhizosphereQLADRLREGGFSVDRVLVEDLRPVPAVCAIGRPRGG*
Ga0126307_1006252113300009789Serpentine SoilARDLGNELANRLREGGFSVNRVLVEDLRPVPAVCVMGRPRGG*
Ga0126307_1047125113300009789Serpentine SoilRHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPKGG*
Ga0126307_1047836513300009789Serpentine SoilRARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126307_1106529213300009789Serpentine SoilRHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126307_1109345323300009789Serpentine SoilARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126307_1122642613300009789Serpentine SoilDLGNELADRLREGGFSVDRVLVEDLRPVPAVCVIGRPPGG*
Ga0126307_1144139423300009789Serpentine SoilDLGNELADRLREGGFSVDRVLVEDLRPVPAVCVMGQP*
Ga0126307_1160002223300009789Serpentine SoilNELADRLREGGFSVDRVLVEDLRPVPAACAIGRPQGE*
Ga0126307_1178230613300009789Serpentine SoilRARDLGNELADRLREGGFSVDGVLVEDLRPIPAVCAIGRPQGG*
Ga0126313_1036946113300009840Serpentine SoilAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126313_1137506023300009840Serpentine SoilGNELADRLREGGFSVDSVLVENLRPVPAVCVMGRPQGG*
Ga0126305_1051286913300010036Serpentine SoilADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126304_1000792613300010037Serpentine SoilARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPKGG*
Ga0126315_1051537713300010038Serpentine SoilLADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG*
Ga0126315_1053621313300010038Serpentine SoilELADRLREGGFSVDRILVEDLRPVPAVCAVGRPRYSDS*
Ga0126315_1087300613300010038Serpentine SoilERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126309_1046542113300010039Serpentine SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGE*
Ga0126309_1055426413300010039Serpentine SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126308_1081770213300010040Serpentine SoilRHSAPERARDLGNELADRLRESGFSVDRVLVEHLRPVPAVCAIGRPQGG*
Ga0126308_1095174013300010040Serpentine SoilVYLFWDALHSAPERVRDLGNELADRLREGGFSVDSVLVEDLRPVPAVCAIGRPQGG*
Ga0126312_1001195873300010041Serpentine SoilSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPKGG*
Ga0126311_1052322713300010045Serpentine SoilLADRLRAGGFSGDRVLVEDLRPVPAVCAIGRLRADEHG*
Ga0126311_1113549923300010045Serpentine SoilELAGRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0126306_1033798713300010166Serpentine SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGR*
Ga0126306_1156548223300010166Serpentine SoilERARDLGNELADRLREGGFSVDRVLVEDLRPVLAVCVMGRPQGG*
Ga0134124_1300339313300010397Terrestrial SoilADRLRQGGFSVDSVLVEDLCPVPAVCAIGRPQGGT*
Ga0134123_1019007713300010403Terrestrial SoilSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCATGRPQRSS*
Ga0137374_1074074713300012204Vadose Zone SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQVG*
Ga0150985_10903919753300012212Avena Fatua RhizosphereMVLSPERAQELGSELADRLHGAGFSVDRVLVKNLRPVPAVCAIGRPTGG*
Ga0137369_1017073643300012355Vadose Zone SoilDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0137369_1040621323300012355Vadose Zone SoilELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0137369_1113116923300012355Vadose Zone SoilRDLGNELADRLRDGGFSVDRVLVEDLRPVPAVCAMGRPQGG*
Ga0157335_104399413300012492Arabidopsis RhizosphereRDLGNVLADRLRQGGFSVDRVLVEDLRPVPAVCAIGRPQGGT*
Ga0157282_1006151513300012904SoilRDLGNELAGRLREGGFSIDRVLAEDLRPVPAVCVIGRP*
Ga0134087_1012682913300012977Grasslands SoilAPERARDLGNELADRLRDGGFSVDRVLVEDLRPVPAVCAIGRPQGE*
Ga0157380_1255632623300014326Switchgrass RhizosphereCHSAPERARHLGNELADRLRDGGFSVDRVLVEDLRPVPAVCVMGRPQGA*
Ga0173483_1047203913300015077SoilELAERLRAGGLSVDRVLVEDLRPVPAVCVIGRSEGR*
Ga0190266_1130342813300017965SoilRARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG
Ga0190265_1033794543300018422SoilRHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAACAIGRRQGGEAGALGLSSTR
Ga0190272_1314649523300018429SoilGNKLADRLREGGFSVDRVLVEDLHPVPAVCAMGRPQGG
Ga0190275_1029569913300018432SoilAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGLSSTR
Ga0190275_1289773613300018432SoilERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG
Ga0190274_1190473413300018476SoilRHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQCG
Ga0190271_1015094813300018481SoilAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Ga0190271_1194252713300018481SoilLADRLREGGFSVDRVLVEDLRPVPAVCVIGRPQGG
Ga0190271_1317009823300018481SoilDLGNELADRLREGGFSVDRVLVEDLRPVPAVCVIGRPHAG
Ga0209574_1007666913300027809AgaveARDLGNELAERLREGGFSVDRVLVEDLRPFPAVCVTGRLRYT
Ga0268266_1210786013300028379Switchgrass RhizosphereHSAPERARHLGNELADRLRDGGFSVDRVLVEHLRPVPAVCVMGRPQGA
Ga0307320_1007816723300028771SoilRDLANELADRLREGRFSVDRLLVEDLRPVPAVCAIGRPQGR
Ga0307306_1008068613300028782SoilGNELADRLREGGFSVGRVLVEDVRPVPAVCAMGRPQGG
Ga0307290_1010227313300028791SoilHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Ga0307503_1033329113300028802SoilAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQG
Ga0307305_1017560023300028807SoilPERARDLGNELADRLREGGFSVGRVLVEDVRPVPAVCAMGRPQGG
Ga0307302_1049136023300028814SoilGRARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGE
Ga0307296_1005472413300028819SoilRARELGNELADRLREGGFSVDRVLVEDLRPVPAVCVMGRPQGS
Ga0307289_1035478413300028875SoilRHSAPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCVMGRPQGS
Ga0307308_1008646433300028884SoilNELADRLREGGFSVDGVLVEDLRPVPAVCAMGRPQGG
Ga0307304_1008861313300028885SoilNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG
Ga0299907_1005400013300030006SoilDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRLQRG
Ga0299907_1029230013300030006SoilRDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG
Ga0268253_1010900913300030514AgaveARDLGNELAERLREGGFSVDRVLVEDLRPFPAVCVTGRP
Ga0299914_1048053533300031228SoilLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Ga0299914_1097827513300031228SoilPERARDLGNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Ga0299913_1096969013300031229SoilELADRLREGGFSVDRVLVEDLRPVPAVCAMGRPQGG
Ga0299913_1178266123300031229SoilARDLGNELADRLREGGFSVDRVLVEDLSPVPAVCAMGRPQGG
Ga0299913_1184732813300031229SoilELADRLREGGFSVDRVLVEDLRPVSAVCVMGRPQGG
Ga0307413_1086207323300031824RhizosphereERARDLGNELADRLCEGGFSVDRVLVKDLRPVPAVCAMGRPQGG
Ga0307410_1021968733300031852RhizosphereAPERARDLGNDLADRLREGGFAVDRVLVEHLRPGPAVCAIGRPHVV
Ga0307410_1156305523300031852RhizosphereGNDLADRLRTGGFAIDRVLVEDLRPVPAVCVIGRPQGR
Ga0307416_10178964223300032002RhizosphereELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGG
Ga0307416_10384935213300032002RhizosphereRHSAPERARDLGNELADRLREAGFSVDRVLVEDLRPVPAVCAIGRPEGG
Ga0310906_1019416433300032013SoilNELADRLREGGFSVDRVLVEDLRPVPAVCAIGRPQGR
Ga0307415_10149329223300032126RhizosphereGDRLSEKIRSAGFSVDRVLVKELRPVPAVCVTARP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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