NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105233

Metagenome / Metatranscriptome Family F105233

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105233
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 46 residues
Representative Sequence LAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Number of Associated Samples 92
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 86.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (70.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(75.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 59.09%    Coil/Unstructured: 40.91%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF06199Phage_tail_2 24.00
PF09718Tape_meas_lam_C 6.00
PF13550Phage-tail_3 2.00
PF16778Phage_tail_APC 1.00
PF09931DUF2163 1.00



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A70.00 %
All OrganismsrootAll Organisms30.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10027162All Organisms → Viruses → Predicted Viral2857Open in IMG/M
3300001450|JGI24006J15134_10165841Not Available708Open in IMG/M
3300001472|JGI24004J15324_10010772Not Available3308Open in IMG/M
3300001748|JGI11772J19994_1023283Not Available876Open in IMG/M
3300002488|JGI25128J35275_1092921Not Available613Open in IMG/M
3300004461|Ga0066223_1091636Not Available1088Open in IMG/M
3300006402|Ga0075511_1036162All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii1337Open in IMG/M
3300006405|Ga0075510_10020787All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii837Open in IMG/M
3300006735|Ga0098038_1071448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii1227Open in IMG/M
3300006735|Ga0098038_1136499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii824Open in IMG/M
3300006737|Ga0098037_1087706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii1087Open in IMG/M
3300006737|Ga0098037_1257722Not Available558Open in IMG/M
3300006789|Ga0098054_1322740Not Available550Open in IMG/M
3300006802|Ga0070749_10402848Not Available755Open in IMG/M
3300006810|Ga0070754_10135799All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1187Open in IMG/M
3300006916|Ga0070750_10127380All Organisms → Viruses → Predicted Viral1164Open in IMG/M
3300006922|Ga0098045_1152054All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii532Open in IMG/M
3300006925|Ga0098050_1005324All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → spotted fever group → Rickettsia hoogstraalii4001Open in IMG/M
3300007236|Ga0075463_10022593Not Available2062Open in IMG/M
3300007236|Ga0075463_10224826Not Available604Open in IMG/M
3300007276|Ga0070747_1035163Not Available1968Open in IMG/M
3300007538|Ga0099851_1007323All Organisms → cellular organisms → Bacteria → Proteobacteria4582Open in IMG/M
3300007540|Ga0099847_1220475Not Available550Open in IMG/M
3300007963|Ga0110931_1101517Not Available867Open in IMG/M
3300009001|Ga0102963_1380727Not Available553Open in IMG/M
3300009086|Ga0102812_10198790Not Available1093Open in IMG/M
3300009172|Ga0114995_10179073Not Available1180Open in IMG/M
3300009334|Ga0103841_1001017Not Available996Open in IMG/M
3300009422|Ga0114998_10066160All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1844Open in IMG/M
3300009422|Ga0114998_10155528Not Available1099Open in IMG/M
3300009481|Ga0114932_10143079Not Available1473Open in IMG/M
3300009497|Ga0115569_10443477Not Available556Open in IMG/M
3300009512|Ga0115003_10222457Not Available1130Open in IMG/M
3300009605|Ga0114906_1047055All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1656Open in IMG/M
3300009608|Ga0115100_10067008Not Available732Open in IMG/M
3300009677|Ga0115104_10247751Not Available816Open in IMG/M
3300009677|Ga0115104_10248986Not Available816Open in IMG/M
3300009735|Ga0123377_1041375Not Available669Open in IMG/M
3300009757|Ga0123367_1148463Not Available1006Open in IMG/M
3300010150|Ga0098056_1269983Not Available562Open in IMG/M
3300010151|Ga0098061_1348346Not Available503Open in IMG/M
3300010297|Ga0129345_1002017Not Available7751Open in IMG/M
3300010300|Ga0129351_1357161Not Available548Open in IMG/M
3300010883|Ga0133547_10984892Not Available1633Open in IMG/M
3300012525|Ga0129353_1814202All Organisms → Viruses → Predicted Viral1292Open in IMG/M
3300012528|Ga0129352_10390230Not Available1915Open in IMG/M
3300016727|Ga0182051_1004726Not Available1918Open in IMG/M
3300016733|Ga0182042_1102746All Organisms → Viruses980Open in IMG/M
3300016734|Ga0182092_1369088Not Available750Open in IMG/M
3300016791|Ga0182095_1176496Not Available741Open in IMG/M
3300017697|Ga0180120_10106418Not Available1216Open in IMG/M
3300017725|Ga0181398_1033292Not Available1265Open in IMG/M
3300017731|Ga0181416_1042434All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1069Open in IMG/M
3300017751|Ga0187219_1191028All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C1731570Open in IMG/M
3300017764|Ga0181385_1039344All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1484Open in IMG/M
3300017772|Ga0181430_1002933All Organisms → cellular organisms → Bacteria → Proteobacteria6563Open in IMG/M
3300017776|Ga0181394_1243813Not Available539Open in IMG/M
3300019459|Ga0181562_10119047Not Available1474Open in IMG/M
3300020175|Ga0206124_10369984All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon537Open in IMG/M
3300020391|Ga0211675_10029771All Organisms → Viruses2749Open in IMG/M
3300020410|Ga0211699_10420304Not Available529Open in IMG/M
3300020424|Ga0211620_10248579All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.759Open in IMG/M
3300020436|Ga0211708_10383930All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C1731575Open in IMG/M
3300020448|Ga0211638_10508321All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C1731567Open in IMG/M
3300020459|Ga0211514_10001426Not Available14988Open in IMG/M
3300021085|Ga0206677_10163185Not Available984Open in IMG/M
3300021085|Ga0206677_10305659Not Available634Open in IMG/M
3300021169|Ga0206687_1467573Not Available779Open in IMG/M
3300021169|Ga0206687_1511419Not Available984Open in IMG/M
3300021347|Ga0213862_10354840Not Available523Open in IMG/M
3300021356|Ga0213858_10001751Not Available10382Open in IMG/M
3300021373|Ga0213865_10440967Not Available568Open in IMG/M
3300021957|Ga0222717_10698901Not Available519Open in IMG/M
3300021959|Ga0222716_10000991Not Available23880Open in IMG/M
3300022057|Ga0212025_1070241Not Available604Open in IMG/M
3300022065|Ga0212024_1055358Not Available699Open in IMG/M
3300022183|Ga0196891_1085128All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon559Open in IMG/M
3300022308|Ga0224504_10140921Not Available988Open in IMG/M
(restricted) 3300023109|Ga0233432_10122150All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1419Open in IMG/M
(restricted) 3300024255|Ga0233438_10317507Not Available592Open in IMG/M
3300025079|Ga0207890_1062475All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S08-C1731609Open in IMG/M
3300025084|Ga0208298_1003336All Organisms → Viruses → Predicted Viral4986Open in IMG/M
3300025084|Ga0208298_1068998Not Available667Open in IMG/M
3300025102|Ga0208666_1143456Not Available540Open in IMG/M
3300025128|Ga0208919_1111182Not Available875Open in IMG/M
3300025610|Ga0208149_1152542Not Available526Open in IMG/M
3300025655|Ga0208795_1065215Not Available1041Open in IMG/M
3300025674|Ga0208162_1184899Not Available541Open in IMG/M
3300025705|Ga0209374_1181585Not Available570Open in IMG/M
3300025751|Ga0208150_1016439All Organisms → Viruses → Predicted Viral2633Open in IMG/M
3300027757|Ga0208671_10034299Not Available1899Open in IMG/M
3300027788|Ga0209711_10171575Not Available1023Open in IMG/M
3300028125|Ga0256368_1013251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1412Open in IMG/M
3300031167|Ga0308023_1063033Not Available702Open in IMG/M
3300031569|Ga0307489_10541958Not Available796Open in IMG/M
3300031580|Ga0308132_1017747Not Available1467Open in IMG/M
3300032088|Ga0315321_10085629Not Available2158Open in IMG/M
3300032277|Ga0316202_10114307Not Available1250Open in IMG/M
3300033742|Ga0314858_051901Not Available995Open in IMG/M
3300034375|Ga0348336_099454Not Available990Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine27.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous20.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine10.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh5.00%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.00%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.00%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water1.00%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.00%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300006402Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006405Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009334Microbial communities of water from the North Atlantic ocean - ACM46EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009677Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009735Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_240_2m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009757Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_205_2m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012528Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016727Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016733Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016734Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016791Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020391Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)EnvironmentalOpen in IMG/M
3300020410Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)EnvironmentalOpen in IMG/M
3300020424Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020448Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021169Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031167Marine microbial communities from water near the shore, Antarctic Ocean - #418EnvironmentalOpen in IMG/M
3300031569Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2EnvironmentalOpen in IMG/M
3300031580Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1111_SCM (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1002716263300000117MarineRTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV*
JGI24006J15134_1016584113300001450MarineIAIAADPTLNGLAKDCFLESTEIDFNAEGEAPLATATLNFLTNYYVKEQAPDVAV*
JGI24004J15324_1001077213300001472MarineSTEIEFNAEGEKPLGYVSLTFLTNYYVKEKNPDVAL*
JGI11772J19994_102328313300001748Saline Water And SedimentTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV*
JGI25128J35275_109292133300002488MarineTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVQETNPDVAV*
Ga0066223_109163613300004461MarineVEEAIAADRTLGGLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKETNPDVAV*
Ga0075511_103616253300006402AqueousCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDVAV*
Ga0075510_1002078713300006405AqueousAKDTYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKENAPDVAV*
Ga0098038_107144813300006735MarineLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKETNPDVAV*
Ga0098038_113649913300006735MarineLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKETNPDIAV*
Ga0098037_108770643300006737MarineATDTTLGGLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKETNPDIAV*
Ga0098037_125772213300006737MarineLTKDCFLDSTEIEFNSEAETPLAVATLIFLTNYYVKEQAPDVA
Ga0098054_132274033300006789MarineESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDVAV*
Ga0070749_1040284843300006802AqueousAKDTYLESTEIDFNGEAEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0070754_1013579913300006810AqueousQAIAADPTLSGKAKDCYIESTEIEFNAEGEKPLAFCTLTFLTSYYVQEQNPDVAV*
Ga0070750_1012738013300006916AqueousKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0098045_115205433300006922MarineLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDIAV*
Ga0098050_100532413300006925MarineSTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDIAV*
Ga0075463_1002259353300007236AqueousDPTLSGKAKDCHLESTEIEFNSEGEKPLAYATLTFLTNYYVQEQNPDVAV*
Ga0075463_1022482633300007236AqueousRTLGGLAKDTFIESTEISFNAEGEKPLGFVSLTFISNYYVKEKNPDVAV*
Ga0070747_103516363300007276AqueousAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKEKNPDVAV*
Ga0099851_100732393300007538AqueousLAKDTYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKENTPDVAV*
Ga0099847_122047513300007540AqueousADRTLDGLAKDCYLESTEISFNAEGEKPLGFVSLTFISNYYVKEKNPDVAV*
Ga0110931_110151743300007963MarineLAKDTYLESTEIEFNSEGEKPLGYVSLTFLTNYYVKENAPDVAV*
Ga0102963_138072713300009001Pond WaterGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLANYYVQETNPDVAV*
Ga0102812_1019879043300009086EstuarineYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0114995_1017907343300009172MarineDDTIDTSSKEVETAIAADPTLNGLAKDCYLESTEIEFNAEGEQPLASATLIFLTNYYVKAQAPDVAV*
Ga0103841_100101713300009334River WaterDRTLDGLAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDIAV*
Ga0114998_1006616013300009422MarineKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVKEKNPDVAL*
Ga0114998_1015552813300009422MarineDCYLESTEIEFNAEGETPLAYATLTFLTNYYVKAQAPDVAV*
Ga0114932_1014307913300009481Deep SubsurfaceKDCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYVQETAPDVAV*
Ga0115569_1044347713300009497Pelagic MarineESTEIEFNSEGEKPLGYVSLTFLTNYYVKENAPDVAV*
Ga0115003_1022245713300009512MarineDRTLGGLAKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVKEKNPDVAL*
Ga0114906_104705513300009605Deep OceanTEIEYNAEGEKPVGYATLTFNVNYYNQEQAPDVAR*
Ga0115100_1006700833300009608MarineTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKENNPDVAV*
Ga0115104_1024775113300009677MarineLGGLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKETNPDVAV*
Ga0115104_1024898613300009677MarineLGGLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKENNPDIAV*
Ga0123377_104137533300009735MarineLGGLAKDTYIESTEIEYTGDGEQPVGYVSLTFLTNYYVQETNPDIAV*
Ga0123367_114846313300009757MarineDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0098056_126998333300010150MarineEAIAADRTLGGLAKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVKEKNPDVAL*
Ga0098061_134834613300010151MarineESTEIDFTGEGEQPVGSVTLTYLTNYYVQETNPDVAV*
Ga0129345_100201713300010297Freshwater To Marine Saline GradientAKDTYLESTEIEFNSEGEKPLGYVSLTFLTNYYVKENAPDVAV*
Ga0129351_135716133300010300Freshwater To Marine Saline GradientAADRTLDGLAKDTYLESTEIEFNAEGEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0133547_1098489263300010883MarineSSKEVETAIAADPTLNGLAKDCYLESTEIEFNAEGEQPLASATLIFLTNYYVKAQAPDVAV*
Ga0129353_181420213300012525AqueousLGGLAKDTYIESTDIEYTGDGEQPVGYVTLTFLTNYYVQETNPDVAV*
Ga0129352_1039023013300012528AqueousEAIAADRTLGGLAKDTYLESTEIDFNGEAEKPLGYVSLTFLTNYYVQETNPDVAV*
Ga0182051_100472653300016727Salt MarshLDGLAKDTYLESTEIEFNSEGEKPLGYVSLTFLTNYYVKENAPDVAV
Ga0182042_110274613300016733Salt MarshEAITADRTLGGLAKDTYIESTEIEYTGEGEQPVGFVTLTFLTNYYVQETNPDVAV
Ga0182092_136908833300016734Salt MarshRTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Ga0182095_117649613300016791Salt MarshKDTYVESTEIEYTGEGEQPVGYVTLTFLTNYYVQETNPDVAV
Ga0180120_1010641813300017697Freshwater To Marine Saline GradientADPTLSGKAKDCYIESTEIEFNAEGEKPLAFCTLTFLTSYYVQEQNPDVAV
Ga0181398_103329213300017725SeawaterDRTLDGKAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKENNPDVAV
Ga0181416_104243443300017731SeawaterDTTLNSLAKDCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYVQETEPDVAV
Ga0187219_119102813300017751SeawaterLAKDCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYIQETAPDVAV
Ga0181385_103934413300017764SeawaterTEIEFNAEGESPVGYATLTFLTTYHVKETNPDVAV
Ga0181430_100293313300017772SeawaterTYVESTEIEYTGDGEQPVGYVTLTFLTNYYVQETNPDVAV
Ga0181394_124381313300017776SeawaterTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKENNPDVAV
Ga0181562_1011904753300019459Salt MarshESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Ga0206124_1036998433300020175SeawaterLSGKAKDCYIESTEIEFNAEGEKPLAFATLTFLTSYYVQEQNPDVAV
Ga0211675_1002977113300020391MarineGLAKDCFLQSTSIEYNTEGEQPLSFAVLTFLTNYYVQETAPDVAV
Ga0211699_1042030433300020410MarineTFLESTEIEYNAEGEKPVGYATLTFNVNYYNQEQAPDVAR
Ga0211620_1024857933300020424MarineTLNGLAKDCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYVQETAPDVAV
Ga0211708_1038393033300020436MarineAKDAFLESTDIDFNSEAENPVGFASLTFLIKYYVQETNPDIAV
Ga0211638_1050832113300020448MarineKDIFIQSTEIEFNAEGESPVGYATLTFLTTYHVKETNPDVAV
Ga0211514_10001426193300020459MarineDCFLQSTEIEYNTEGEQPLSYAVLTFLTNYYVQETAPDVAV
Ga0206677_1016318513300021085SeawaterDTYVESTEIEYTGDGEQPVGYVTLTFLTNYYVQETNPDVAV
Ga0206677_1030565913300021085SeawaterLGGLAKDCFLESTEIDFNPEGEAPLAFATLNFLTNYYVQEQAPDVAV
Ga0206687_146757313300021169SeawaterAISADRTLGGLAKDTYVESTEIEYTGDGEQPVGYVTLTFLTNYYVQETNPDVAV
Ga0206687_151141913300021169SeawaterLGGLAKDVYIESTEIEFTGDGEQPVGYVTLSFLTNYYVQETNPDVAV
Ga0213862_1035484033300021347SeawaterKEVEQAIAADPTLSGKAKDCYIESTEIEFNAEGERPLAFATLTFLTSYYVQEQNPDVAV
Ga0213858_1000175113300021356SeawaterVEEAIAADRTLGGLAKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVQETNPDVAV
Ga0213865_1044096733300021373SeawaterDTYVESTEIEYTGEGEQPVGYVTLTFLTNYYVQETNPDVAV
Ga0222717_1069890133300021957Estuarine WaterTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Ga0222716_1000099113300021959Estuarine WaterTVCKEVEQAIAADPTLSGKAKDCYIESTEIEFNAEGERPLAFGTLIFLTSYYVQEQNPDVAV
Ga0212025_107024133300022057AqueousYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDVAV
Ga0212024_105535813300022065AqueousEADPTLSGKAKDCHLESTEIEFNSEGEKPLAYATLTFLTNYYVQEQNPDVAV
Ga0196891_108512833300022183AqueousEVEQAIAADPTLSGKAKDCYIESTEIEFNAEGERPLAFATLTFLTSYYVQEQNPDVAV
Ga0224504_1014092113300022308SedimentAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKENNPDVAV
(restricted) Ga0233432_1012215053300023109SeawaterAISADRTLGGLAKDTYIESTDIEYTGDGEQPVGYVTLTFLTNYYVQETNPDVAV
(restricted) Ga0233438_1031750733300024255SeawaterLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDIAV
Ga0207890_106247533300025079MarineAIAADTTLGGLAKDCYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKENNPDIAV
Ga0208298_100333613300025084MarineRTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDIAV
Ga0208298_106899833300025084MarineKDCYIESTEIEFNAEGEKPLAFATLTFLTSYYVQEQNPDVAV
Ga0208666_114345613300025102MarineLSGKAKDCHLESTEIEFNSEGEKPLAYATLTFLTNYYVQEQNPDVAV
Ga0208919_111118243300025128MarineLAKDTYLESTEIEFNSEGEKPLGYVSLTFLTNYYVKENAPDVAV
Ga0208149_115254213300025610AqueousAADRTLDGKAKDTYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKEKNPDVAV
Ga0208795_106521513300025655AqueousTYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKENAPDVAV
Ga0208162_118489913300025674AqueousKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVQETNPDVAV
Ga0209374_118158533300025705MarineIAKDTFIESTEISFNAEGEKPLGFVSLTFISNYYVKEQNPDVAV
Ga0208150_101643913300025751AqueousRTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVKETNPDVAV
Ga0208671_1003429963300027757EstuarineLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Ga0209711_1017157513300027788MarineSGKAKDCYLESTEIEFNAEGEKPLAFATLTFLTSYYVQEQSPDVAV
Ga0256368_101325163300028125Sea-Ice BrineSTEIEYNAEGEKPVGYATLTFNVNYFNQEQAPDVAR
Ga0308023_106303333300031167MarineKEVETAIAADPTLNGLAKDCYLESTEIEFNAEGETPLAYATLTFLTNYYVQAQAPDVAV
Ga0307489_1054195813300031569Sackhole BrineAKDTYLESTEIEFNAEGEKPLGYVSMTFLTNYYVKETNPDVAL
Ga0308132_101774713300031580MarineKDCYLESTEIEFNAEGEKPLAFCSLTFLTSYYVQEQSPDVAV
Ga0315321_1008562913300032088SeawaterADRTLDGLAKDCYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV
Ga0316202_1011430763300032277Microbial MatLESTEIEFNGEGEKPLGYVSLTFLTNYYVKENNPDVAV
Ga0314858_051901_872_9943300033742Sea-Ice BrineTYLESTEIEFNAEGEKPLGYVSLTFLTNYYVKEKAPDVAV
Ga0348336_099454_1_1203300034375AqueousYLESTEIEFNGEGEKPLGYVSLTFLTNYYVQETNPDVAV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.