NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F104909

Metagenome / Metatranscriptome Family F104909

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F104909
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 56 residues
Representative Sequence MTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Number of Associated Samples 70
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.00 %
% of genes near scaffold ends (potentially truncated) 22.00 %
% of genes from short scaffolds (< 2000 bps) 79.00 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (62.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(44.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(85.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 21.05%    β-sheet: 0.00%    Coil/Unstructured: 78.95%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF05065Phage_capsid 5.00
PF04883HK97-gp10_like 2.00
PF08299Bac_DnaA_C 2.00
PF16778Phage_tail_APC 1.00
PF01555N6_N4_Mtase 1.00
PF08774VRR_NUC 1.00
PF04586Peptidase_S78 1.00
PF05135Phage_connect_1 1.00
PF04860Phage_portal 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 5.00
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 2.00
COG0863DNA modification methylaseReplication, recombination and repair [L] 1.00
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 1.00
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 1.00
COG3740Phage head maturation proteaseMobilome: prophages, transposons [X] 1.00


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A62.00 %
All OrganismsrootAll Organisms38.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10007158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales6609Open in IMG/M
3300001354|JGI20155J14468_10018135All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3720Open in IMG/M
3300004951|Ga0068513_1005451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1332Open in IMG/M
3300005214|Ga0069002_10203927Not Available546Open in IMG/M
3300006029|Ga0075466_1026108All Organisms → Viruses → Predicted Viral1853Open in IMG/M
3300006029|Ga0075466_1139246Not Available631Open in IMG/M
3300006790|Ga0098074_1000742All Organisms → cellular organisms → Bacteria19668Open in IMG/M
3300006790|Ga0098074_1117400Not Available696Open in IMG/M
3300006790|Ga0098074_1158355Not Available578Open in IMG/M
3300006802|Ga0070749_10257887All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales986Open in IMG/M
3300006802|Ga0070749_10280998All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales937Open in IMG/M
3300006802|Ga0070749_10313316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales877Open in IMG/M
3300006916|Ga0070750_10014824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4029Open in IMG/M
3300006916|Ga0070750_10121687All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1197Open in IMG/M
3300006916|Ga0070750_10177666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales953Open in IMG/M
3300006920|Ga0070748_1301386Not Available570Open in IMG/M
3300006929|Ga0098036_1207197Not Available595Open in IMG/M
3300007538|Ga0099851_1104369Not Available1078Open in IMG/M
3300007539|Ga0099849_1058037Not Available1598Open in IMG/M
3300007540|Ga0099847_1160268Not Available666Open in IMG/M
3300007778|Ga0102954_1184170Not Available608Open in IMG/M
3300009001|Ga0102963_1379684Not Available554Open in IMG/M
3300009027|Ga0102957_1313180Not Available576Open in IMG/M
3300009071|Ga0115566_10417487Not Available771Open in IMG/M
3300009124|Ga0118687_10008964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3336Open in IMG/M
3300009124|Ga0118687_10167537Not Available791Open in IMG/M
3300009149|Ga0114918_10481246Not Available667Open in IMG/M
3300010300|Ga0129351_1265559All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage654Open in IMG/M
3300010368|Ga0129324_10139003Not Available1020Open in IMG/M
3300010389|Ga0136549_10164721Not Available987Open in IMG/M
3300011252|Ga0151674_1125305Not Available673Open in IMG/M
3300012525|Ga0129353_1337516Not Available1142Open in IMG/M
3300013010|Ga0129327_10820046Not Available529Open in IMG/M
3300016746|Ga0182055_1144091Not Available569Open in IMG/M
3300017697|Ga0180120_10055963All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1769Open in IMG/M
3300017738|Ga0181428_1020939All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1511Open in IMG/M
3300017738|Ga0181428_1112671Not Available637Open in IMG/M
3300017818|Ga0181565_10002022Not Available15530Open in IMG/M
3300017818|Ga0181565_10405903Not Available898Open in IMG/M
3300017818|Ga0181565_10742472Not Available620Open in IMG/M
3300017949|Ga0181584_10384060Not Available882Open in IMG/M
3300017951|Ga0181577_10100494All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2004Open in IMG/M
3300017951|Ga0181577_10121332Not Available1795Open in IMG/M
3300017951|Ga0181577_10164732All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1501Open in IMG/M
3300017951|Ga0181577_10187526Not Available1389Open in IMG/M
3300017951|Ga0181577_10315112Not Available1013Open in IMG/M
3300017951|Ga0181577_10372352Not Available913Open in IMG/M
3300017951|Ga0181577_10552602Not Available714Open in IMG/M
3300017952|Ga0181583_10259169Not Available1119Open in IMG/M
3300017956|Ga0181580_10069953Not Available2616Open in IMG/M
3300017957|Ga0181571_10099022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1964Open in IMG/M
3300017963|Ga0180437_10467545All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage933Open in IMG/M
3300017971|Ga0180438_10767537All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage705Open in IMG/M
3300017986|Ga0181569_10874068Not Available585Open in IMG/M
3300017991|Ga0180434_10915899All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage659Open in IMG/M
3300017991|Ga0180434_10991630Not Available631Open in IMG/M
3300018039|Ga0181579_10005709All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes9498Open in IMG/M
3300018039|Ga0181579_10636790Not Available548Open in IMG/M
3300018049|Ga0181572_10473317Not Available774Open in IMG/M
3300018416|Ga0181553_10050478All Organisms → Viruses → Predicted Viral2768Open in IMG/M
3300018416|Ga0181553_10540553Not Available619Open in IMG/M
3300018420|Ga0181563_10021899All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4963Open in IMG/M
3300018420|Ga0181563_10036086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3635Open in IMG/M
3300018420|Ga0181563_10697196Not Available561Open in IMG/M
3300018421|Ga0181592_10495030Not Available846Open in IMG/M
3300018426|Ga0181566_10804642Not Available641Open in IMG/M
3300019276|Ga0182067_1640299All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage989Open in IMG/M
3300019280|Ga0182068_1738682Not Available622Open in IMG/M
3300019718|Ga0193999_1010176Not Available933Open in IMG/M
3300019721|Ga0194011_1022237Not Available691Open in IMG/M
3300020189|Ga0181578_10008400Not Available8543Open in IMG/M
3300021958|Ga0222718_10004609Not Available11390Open in IMG/M
3300021958|Ga0222718_10018590All Organisms → cellular organisms → Bacteria4884Open in IMG/M
3300021958|Ga0222718_10549026Not Available550Open in IMG/M
3300021959|Ga0222716_10133973All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1635Open in IMG/M
3300021959|Ga0222716_10207774Not Available1235Open in IMG/M
3300021959|Ga0222716_10389553Not Available813Open in IMG/M
3300021964|Ga0222719_10013263All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes6731Open in IMG/M
3300022074|Ga0224906_1174935Not Available596Open in IMG/M
3300022208|Ga0224495_10052521All Organisms → cellular organisms → Bacteria1850Open in IMG/M
3300022934|Ga0255781_10004350All Organisms → cellular organisms → Bacteria10742Open in IMG/M
3300023087|Ga0255774_10513706Not Available508Open in IMG/M
3300025093|Ga0208794_1006970All Organisms → Viruses → Predicted Viral3123Open in IMG/M
3300025093|Ga0208794_1008175All Organisms → cellular organisms → Bacteria2753Open in IMG/M
3300025128|Ga0208919_1197703Not Available604Open in IMG/M
3300025137|Ga0209336_10044544Not Available1408Open in IMG/M
3300025141|Ga0209756_1252096Not Available647Open in IMG/M
3300025508|Ga0208148_1014988All Organisms → Viruses → Predicted Viral2290Open in IMG/M
3300025630|Ga0208004_1010271All Organisms → cellular organisms → Bacteria3153Open in IMG/M
3300025630|Ga0208004_1082773Not Available790Open in IMG/M
3300025645|Ga0208643_1082370Not Available914Open in IMG/M
3300025655|Ga0208795_1065066Not Available1042Open in IMG/M
3300025685|Ga0209095_1080425Not Available1071Open in IMG/M
3300025690|Ga0209505_1045347All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1451Open in IMG/M
3300025810|Ga0208543_1071309All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage842Open in IMG/M
3300025818|Ga0208542_1050603All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1294Open in IMG/M
3300025818|Ga0208542_1146804Not Available644Open in IMG/M
3300025818|Ga0208542_1151797Not Available630Open in IMG/M
3300027814|Ga0209742_10278234Not Available551Open in IMG/M
(restricted) 3300027861|Ga0233415_10313174Not Available742Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh31.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous22.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water7.00%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.00%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment4.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.00%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment2.00%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment2.00%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment1.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.00%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.00%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment1.00%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300004951Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVsEnvironmentalOpen in IMG/M
3300005214Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007778Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300011252Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeateEnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300016746Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101401AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017949Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017952Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017957Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019276Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101413AT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019280Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071401AT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019718Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_5-6_MGEnvironmentalOpen in IMG/M
3300019721Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MGEnvironmentalOpen in IMG/M
3300020189Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022208Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300023087Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaGEnvironmentalOpen in IMG/M
3300025093Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027814Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-8_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1000715893300000117MarineMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD*
JGI20155J14468_1001813563300001354Pelagic MarineMTKYTVTSHRLAGHELGDTVTDDDLKGANVPALIAGGHLTADEPKKSRKSAPEESEAD*
Ga0068513_100545133300004951Marine WaterMSSYTVTSHNLVGYEHGDTVTDADLEGANVPALIAAGHLAEAKAKNSRKANPESEAD*
Ga0069002_1020392723300005214Natural And Restored WetlandsMTSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0075466_102610853300006029AqueousMTSYTVTSHKLVGHEHGDSVTDDDFEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0075466_113924613300006029AqueousMTSYTVTSHKLAGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0098074_1000742133300006790MarineMTSYTVTSHKLVGYEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAN*
Ga0098074_111740023300006790MarineMKYTVTSDRLAGHASGDTVTDDQLEGANIAALIAGGHLTPVDTKSRRKAQAESEAD*
Ga0098074_115835513300006790MarineSDRLAGHASGDTVTDDQLEGANIAALIAGGHLTPVDTKSRRKAQAESEAD*
Ga0070749_1025788733300006802AqueousMTSYTVTSHKLVGHEHGDAVTADDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD*
Ga0070749_1028099833300006802AqueousMTSYTVTSHNLAGHDHGDTVTDDDLEGANVPALIAAGHLAEAKPKN
Ga0070749_1031331633300006802AqueousMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKAN
Ga0070750_1001482453300006916AqueousMTSYTVTSHNLAGHDHGDTVTDDDLEGANVPALIAGGHLAEAKPKNSRKAKTESEAD*
Ga0070750_1012168723300006916AqueousMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0070750_1017766633300006916AqueousMTSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAAGHLAEAKPKNSRKANPESEA
Ga0070748_130138613300006920AqueousMTSYTVTSHKLAGHAHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD*
Ga0098036_120719723300006929MarineMSYKVTSSKVAGHEIGATVTDQDLEGINVPALIAGGHLTATKTNSRKPANLESEAE*
Ga0099851_110436923300007538AqueousMTSYTVTSHKLVGHEHGDTVTDEDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0099849_105803733300007539AqueousMTSYTVTSHNLAGHAHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0099847_116026823300007540AqueousMTSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD*
Ga0102954_118417023300007778WaterMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIASGHLSADEPKKSRKSAEPESEAD*
Ga0102963_137968423300009001Pond WaterMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSADEPKKSRKADPESEAD*
Ga0102957_131318023300009027Pond WaterMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIASGHLSADEPEKSRKSAEPESEAD*
Ga0115566_1041748723300009071Pelagic MarineMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSVDEPKKSRKAEPESEAD*
Ga0118687_1000896453300009124SedimentMTSYTVTSHKLAGHAHGDTVTDDDFEGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0118687_1016753723300009124SedimentMKYTVKSDRLAGHAQGDTVTDDDLKGANVRALIAGGHLSADEPKKSRKADPESEAD*
Ga0114918_1048124623300009149Deep SubsurfaceVSYKVTSQKVAGHDIGETVTDEDLEGINVPALIAGGHLAATKPNSRKPANLESEAE*
Ga0129351_126555913300010300Freshwater To Marine Saline GradientMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKADKESEAD*
Ga0129324_1013900323300010368Freshwater To Marine Saline GradientMTSYTVTSHNLVGHAHGDTVTDADLAGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0136549_1016472133300010389Marine Methane Seep SedimentMTSYTVTSHKLVGHEHGDTVTDDDLKGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0151674_112530523300011252MarineVSYKVTSSKVAGHDIGSTVTDDELEGINVPALIAGGHLAATKTNSRKPANLESEAE*
Ga0129353_133751613300012525AqueousMTSYTVTSHNLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD*
Ga0129327_1082004623300013010Freshwater To Marine Saline GradientMTSYTVTSHKLAGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD*
Ga0182055_114409113300016746Salt MarshMSSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD
Ga0180120_1005596323300017697Freshwater To Marine Saline GradientMTSYTVTSHNLVGHEHGDTVSDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181428_102093943300017738SeawaterMTSYTVTSHKVAGHEHGDTVNDDDLEGANVPALIAGGHLAEAKPKNSRKANQESEAD
Ga0181428_111267113300017738SeawaterKVTSHKLAGFQHGDTVTEDDLEGANVPALIAGGHLAAATTKTSRKATNEESEG
Ga0181565_1000202273300017818Salt MarshMSSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAAGHLAEAKAKNSRKANPESEAD
Ga0181565_1040590323300017818Salt MarshMTSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAASHLAEAKPKNSRKANPESEAD
Ga0181565_1074247213300017818Salt MarshMTSYTVTSHKLVGHEHGDIVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181584_1038406033300017949Salt MarshMKYTVKSDRLAGHAKGDTVSDDDLEGANVPALIAGGHLSADEPKKSRKAEPESEAD
Ga0181577_1010049423300017951Salt MarshMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSADEPKKSRKADPESEAD
Ga0181577_1012133253300017951Salt MarshMTSYTVTSHKLVGHEHGDTVTDEDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181577_1016473233300017951Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAN
Ga0181577_1018752633300017951Salt MarshMTSYTVTSHNLAGHDHGDTVTDDDLEGANVPALIAGGHLAEAKPKNSRKAKTESEAD
Ga0181577_1031511213300017951Salt MarshMTSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181577_1037235223300017951Salt MarshMTSYTVTSHKLAGHEHGDTVTDDDLKGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181577_1055260233300017951Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD
Ga0181583_1025916923300017952Salt MarshMTSYTVTSHNLAGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181580_1006995353300017956Salt MarshMTSYTVTSHKLVGHAHGDTVSDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181571_1009902223300017957Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAGGHVAEAKPKNSRKANPEGEAD
Ga0180437_1046754533300017963Hypersaline Lake SedimentTSYTVTSHNLAGHAHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKADKESEAD
Ga0180438_1076753713300017971Hypersaline Lake SedimentTMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181569_1087406823300017986Salt MarshMTSYTVTSHNLAGHDHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAN
Ga0180434_1091589913300017991Hypersaline Lake SedimentMTSYTVTSHNLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKADKESEAD
Ga0180434_1099163023300017991Hypersaline Lake SedimentMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181579_10005709173300018039Salt MarshMTSYTVTSHNLAGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181579_1063679023300018039Salt MarshMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSADEPKKSRKAEPESEAD
Ga0181572_1047331733300018049Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKAKNSRKANPESEA
Ga0181553_1005047823300018416Salt MarshMTGYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAN
Ga0181553_1054055323300018416Salt MarshMSSYKVTSHKLAGFKHGDTVTEDDLEGANVPALIAGGHLAAATTKNSRKADNQESEA
Ga0181563_1002189963300018420Salt MarshMSNYKVTSHKLAGFKHGDTVTEDDLEGANVPALIAGGHLAAATTKTSRKANNEESEG
Ga0181563_1003608633300018420Salt MarshMSSYTVTSHKLVGHEHGDTVTDADLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0181563_1069719623300018420Salt MarshMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSVDEPKKSRKADPESEAD
Ga0181592_1049503023300018421Salt MarshMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSVDEPKKSRKAEPESEAD
Ga0181566_1080464233300018426Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKN
Ga0182067_164029913300019276Salt MarshLVGHEHGDIVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0182068_173868223300019280Salt MarshMTSYTVTSHNLVGHEHGDTVTDEDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0193999_101017623300019718SedimentMTSYTVTSHNLAGHEHGDTVTDEDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0194011_102223733300019721SedimentMTSYTVTSHNLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKAN
Ga0181578_10008400163300020189Salt MarshMTSYTVTSHNLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0222718_1000460933300021958Estuarine WaterMTSYTVTSHKLVGHEHGDTVTDDDLQGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0222718_1001859053300021958Estuarine WaterMKYTVKSDRLAGHAQGDTVTDDDLVGANVPALIAGGHLSADEPKKSRKSAEPESEAD
Ga0222718_1054902623300021958Estuarine WaterMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKADKESEAD
Ga0222716_1013397333300021959Estuarine WaterMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKADKESEAD
Ga0222716_1020777413300021959Estuarine WaterTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0222716_1038955313300021959Estuarine WaterSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0222719_1001326313300021964Estuarine WaterMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKA
Ga0224906_117493523300022074SeawaterMTSYTVTSHKVAGHEHGDTVNDDDLEGANVPALIAGGHLAEAKPKNSRKADKESEAD
Ga0224495_1005252163300022208SedimentMKYTVKSDRLAGHAQGDTVTDDDLEGANVPALIAGGHLSADEPKKSRKPAEPESEAD
Ga0255781_1000435013300022934Salt MarshSYTVTSHKLVGHEHGDTVTDDDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD
Ga0255774_1051370613300023087Salt MarshMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEA
Ga0208794_100697053300025093MarineMKYTVTSDRLAGHASGDTVTDDQLEGANIAALIAGGHLTPVDTKSRRKAQAESEAD
Ga0208794_100817533300025093MarineMTSYTVTSHKLVGYEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAN
Ga0208919_119770323300025128MarineMSYKVTSSKVAGHKIGATVTDQDLEGINVPALIAGGHLTATKTNSRKPANLESEAE
Ga0209336_1004454423300025137MarineMSYKVTSSKVAGYEIESIVTEDDLEGINVPALIAGGHLTATKPNSRKPANLESEAD
Ga0209756_125209623300025141MarineMSTYTVTSHNLAGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKADKESEAD
Ga0208148_101498823300025508AqueousMTSYTVTSHKLAGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0208004_101027113300025630AqueousMTSYTVTSHKLVGHEHGDAVTADDLAGANVAALIAAGHLAEAKPKNS
Ga0208004_108277313300025630AqueousMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0208643_108237033300025645AqueousMTSYTVTSHKLVGHEHGDSVTDDDFEGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0208795_106506623300025655AqueousMTSYTVTSHKLVGHEHGDTVTDEDLAGANVPALIAAGHLAEAKPKNSRKANPESEAD
Ga0209095_108042523300025685Pelagic MarineMTKYTVTSHRLAGHELGDTVTDDDLKGANVPALIAGGHLTADEPKKSRKSAPEESEAD
Ga0209505_104534713300025690Pelagic MarineRRRTLSRGGTRQMTKYTVTSHRLAGHELGDTVTDDDLKGANVPALIAGGHLTADEPKKSRKSAPEESEAD
Ga0208543_107130913300025810AqueousLRTMTSYTVTSHKLVGHEHGDAVTADDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD
Ga0208542_105060323300025818AqueousMTSYTVTSHKLVGHEHGDAVTADDLAGANVAALIAAGHLAEAKPKNSRKANPESEAD
Ga0208542_114680423300025818AqueousMTSYTVTSHKLVGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKADKESEA
Ga0208542_115179713300025818AqueousMTSYTVTSHKLAGHEHGDTVTDDDLEGANVPALIAAGHLAEAKPKNS
Ga0209742_1027823413300027814Marine SedimentMTSYTVTSHKLVGHEHGDTVTDDDLAGANVPALIAAGHLAEAKPKNSRKADKES
(restricted) Ga0233415_1031317423300027861SeawaterMTSYTVTSHNLAGHAHGDTVTDDDLEGANVPALIAAGHLAEAKPKNSRKANPESEAD


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.