Metagenome / Metatranscriptome Family F104259

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104259
Family Type	Metagenome / Metatranscriptome
Number of Sequences	100
Average Sequence Length	44 residues
Representative Sequence	LGGRKGQGWRVQISLDIGGLYLPLGGLSLPLHLEAVATFGSHYFP
Number of Associated Samples	13
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.00 %
% of genes near scaffold ends (potentially truncated)	29.00 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	13
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (97.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (87.000 % of family members)
Environment Ontology (ENVO)	Unclassified (88.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (88.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.68% β-sheet: 0.00% Coil/Unstructured: 49.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF13961	DUF4219	2.00
PF14223	Retrotran_gag_2	1.00
PF13966	zf-RVT	1.00
PF00385	Chromo	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
All Organisms	root	All Organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
cellular organisms	root	All Organisms → cellular organisms	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Acrogymnospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae	1.00 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	1.00 %
Pinopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Proteales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales	1.00 %
Pinidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Proteaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae	1.00 %
Conifers I	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Pinales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales	1.00 %
Telopea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae → Telopea	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Pinaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae	1.00 %
Telopea speciosissima	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae → Telopea → Telopea speciosissima	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Picea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea	1.00 %
Telopea speciosissima	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae → Telopea → Telopea speciosissima	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.00 %
Picea glauca	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	1.00 %
Telopea speciosissima	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae → Telopea → Telopea speciosissima	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009633\|Ga0116129_1086687	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Proteales → Proteaceae → Telopea → Telopea speciosissima	917	Open in IMG/M
3300009633\|Ga0116129_1131039	Not Available	717	Open in IMG/M
3300009633\|Ga0116129_1172296	Not Available	615	Open in IMG/M
3300009633\|Ga0116129_1246842	Not Available	505	Open in IMG/M
3300018002\|Ga0187868_1322121	Not Available	506	Open in IMG/M
3300018037\|Ga0187883_10292072	Not Available	833	Open in IMG/M
3300023280\|Ga0255813_10521129	Not Available	582	Open in IMG/M
3300024123\|Ga0228600_1004961	Not Available	973	Open in IMG/M
3300027609\|Ga0209221_1056763	Not Available	1035	Open in IMG/M
3300028016\|Ga0265354_1026999	Not Available	552	Open in IMG/M
3300028019\|Ga0224573_1017159	Not Available	568	Open in IMG/M
3300030879\|Ga0265765_1016778	Not Available	860	Open in IMG/M
3300031090\|Ga0265760_10203268	Not Available	670	Open in IMG/M
3300031090\|Ga0265760_10302400	Not Available	567	Open in IMG/M
3300031090\|Ga0265760_10383543	Not Available	506	Open in IMG/M
3300031708\|Ga0310686_100097490	Not Available	571	Open in IMG/M
3300031708\|Ga0310686_100139758	Not Available	790	Open in IMG/M
3300031708\|Ga0310686_100562775	Not Available	1091	Open in IMG/M
3300031708\|Ga0310686_100573405	Not Available	576	Open in IMG/M
3300031708\|Ga0310686_101241552	Not Available	546	Open in IMG/M
3300031708\|Ga0310686_101487070	Not Available	570	Open in IMG/M
3300031708\|Ga0310686_101745101	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	620	Open in IMG/M
3300031708\|Ga0310686_102265343	Not Available	607	Open in IMG/M
3300031708\|Ga0310686_102469415	Not Available	957	Open in IMG/M
3300031708\|Ga0310686_102660952	Not Available	588	Open in IMG/M
3300031708\|Ga0310686_102696500	Not Available	890	Open in IMG/M
3300031708\|Ga0310686_103119661	Not Available	1083	Open in IMG/M
3300031708\|Ga0310686_103567761	Not Available	592	Open in IMG/M
3300031708\|Ga0310686_103596154	Not Available	589	Open in IMG/M
3300031708\|Ga0310686_103676692	Not Available	500	Open in IMG/M
3300031708\|Ga0310686_104111539	Not Available	935	Open in IMG/M
3300031708\|Ga0310686_104498366	Not Available	618	Open in IMG/M
3300031708\|Ga0310686_104883810	Not Available	1079	Open in IMG/M
3300031708\|Ga0310686_105402249	Not Available	545	Open in IMG/M
3300031708\|Ga0310686_105732467	Not Available	675	Open in IMG/M
3300031708\|Ga0310686_105737430	Not Available	524	Open in IMG/M
3300031708\|Ga0310686_105835612	Not Available	805	Open in IMG/M
3300031708\|Ga0310686_105972992	Not Available	625	Open in IMG/M
3300031708\|Ga0310686_106676836	Not Available	866	Open in IMG/M
3300031708\|Ga0310686_106831596	Not Available	637	Open in IMG/M
3300031708\|Ga0310686_106904780	Not Available	921	Open in IMG/M
3300031708\|Ga0310686_106937799	Not Available	804	Open in IMG/M
3300031708\|Ga0310686_107029856	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	733	Open in IMG/M
3300031708\|Ga0310686_107361346	Not Available	687	Open in IMG/M
3300031708\|Ga0310686_107381501	Not Available	669	Open in IMG/M
3300031708\|Ga0310686_107439406	Not Available	1301	Open in IMG/M
3300031708\|Ga0310686_107924319	Not Available	834	Open in IMG/M
3300031708\|Ga0310686_107940223	Not Available	693	Open in IMG/M
3300031708\|Ga0310686_108053757	Not Available	628	Open in IMG/M
3300031708\|Ga0310686_108375400	Not Available	767	Open in IMG/M
3300031708\|Ga0310686_108681373	Not Available	602	Open in IMG/M
3300031708\|Ga0310686_108683642	Not Available	582	Open in IMG/M
3300031708\|Ga0310686_109117925	Not Available	563	Open in IMG/M
3300031708\|Ga0310686_109156428	Not Available	567	Open in IMG/M
3300031708\|Ga0310686_109363804	Not Available	734	Open in IMG/M
3300031708\|Ga0310686_109573270	Not Available	630	Open in IMG/M
3300031708\|Ga0310686_109839483	Not Available	744	Open in IMG/M
3300031708\|Ga0310686_110267031	Not Available	595	Open in IMG/M
3300031708\|Ga0310686_110280948	Not Available	708	Open in IMG/M
3300031708\|Ga0310686_110737642	Not Available	651	Open in IMG/M
3300031708\|Ga0310686_110768811	Not Available	620	Open in IMG/M
3300031708\|Ga0310686_111088930	Not Available	845	Open in IMG/M
3300031708\|Ga0310686_111605536	Not Available	554	Open in IMG/M
3300031708\|Ga0310686_111927827	Not Available	804	Open in IMG/M
3300031708\|Ga0310686_112156386	Not Available	549	Open in IMG/M
3300031708\|Ga0310686_112614004	Not Available	643	Open in IMG/M
3300031708\|Ga0310686_112842863	Not Available	687	Open in IMG/M
3300031708\|Ga0310686_113245570	Not Available	700	Open in IMG/M
3300031708\|Ga0310686_113451827	Not Available	599	Open in IMG/M
3300031708\|Ga0310686_113477500	Not Available	716	Open in IMG/M
3300031708\|Ga0310686_113513414	Not Available	563	Open in IMG/M
3300031708\|Ga0310686_113586569	Not Available	667	Open in IMG/M
3300031708\|Ga0310686_113589547	Not Available	536	Open in IMG/M
3300031708\|Ga0310686_113660887	Not Available	712	Open in IMG/M
3300031708\|Ga0310686_113767862	Not Available	641	Open in IMG/M
3300031708\|Ga0310686_113831567	Not Available	751	Open in IMG/M
3300031708\|Ga0310686_114494126	Not Available	610	Open in IMG/M
3300031708\|Ga0310686_114517651	Not Available	529	Open in IMG/M
3300031708\|Ga0310686_114651572	Not Available	575	Open in IMG/M
3300031708\|Ga0310686_114951344	Not Available	1079	Open in IMG/M
3300031708\|Ga0310686_114954449	Not Available	578	Open in IMG/M
3300031708\|Ga0310686_115048141	Not Available	580	Open in IMG/M
3300031708\|Ga0310686_115106010	Not Available	623	Open in IMG/M
3300031708\|Ga0310686_115208064	Not Available	620	Open in IMG/M
3300031708\|Ga0310686_115466422	Not Available	607	Open in IMG/M
3300031708\|Ga0310686_115768008	Not Available	591	Open in IMG/M
3300031708\|Ga0310686_116037127	Not Available	661	Open in IMG/M
3300031708\|Ga0310686_116552814	Not Available	652	Open in IMG/M
3300031708\|Ga0310686_116598482	Not Available	718	Open in IMG/M
3300031708\|Ga0310686_117941454	Not Available	674	Open in IMG/M
3300031708\|Ga0310686_118287026	Not Available	792	Open in IMG/M
3300031708\|Ga0310686_118553667	Not Available	574	Open in IMG/M
3300031708\|Ga0310686_118632597	Not Available	609	Open in IMG/M
3300031708\|Ga0310686_118640135	Not Available	691	Open in IMG/M
3300031708\|Ga0310686_118693968	Not Available	748	Open in IMG/M
3300031708\|Ga0310686_118860259	Not Available	652	Open in IMG/M
3300031708\|Ga0310686_118932651	Not Available	579	Open in IMG/M
3300031708\|Ga0310686_119089382	Not Available	525	Open in IMG/M
3300032515\|Ga0348332_11322164	Not Available	598	Open in IMG/M
3300033545\|Ga0316214_1065349	Not Available	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.00%
Host-Associated	Host-Associated	4.00%
Engineered	Engineered	1.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.00%
Aquatic	Environmental → Aquatic	6.00%
Plants	Host-Associated → Plants	4.00%
Bioreactor	Engineered → Bioreactor	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.00%
Freshwater	Environmental → Aquatic → Freshwater	6.00%
Roots	Host-Associated → Plants → Roots	3.00%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.00%
Aerobic	Engineered → Bioreactor → Aerobic	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.00%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.00%
Loam	Environmental → Terrestrial → Soil → Loam	1.00%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.00%
Unclassified	Engineered → Bioreactor → Aerobic → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	87.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.00%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.00%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.00%
Unclassified	Engineered → Bioreactor → Aerobic → Unclassified → Unclassified	1.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	87.00%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.00%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	3.00%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.00%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.00%
Food Waste	Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste	1.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300023280	Combined Assembly of Gp0238881, Gp0242115	Engineered	Open in IMG/M
3300024123	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5	Host-Associated	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028019	Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU1	Host-Associated	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116129_10866871	3300009633	Peatland	GWRGQPSLDIGGLYLPLGGLSLPLYLEAVATFGSHYFP*
Ga0116129_11310392	3300009633	Peatland	LGGRKGQGWRVQLSLDIGGLYLPLGGLSLPLHLEAVATFGSHYFP*
Ga0116129_11722961	3300009633	Peatland	LGGRKGKGWRVSISLDIGGLYLPLVGLSLPLHLEVVATFGSHYFP*
Ga0116129_12468422	3300009633	Peatland	FLGGRKGKGWRVQISLDIGGFYLSLGGLTLPLHLEAVATFGSHYFP*
Ga0187868_13221211	3300018002	Peatland	LGGRKGQGWRVKISIDIGRLYLPLGGLSLPLHLEAVATFGSH
Ga0187883_102920721	3300018037	Peatland	LGGMKGKGWRVKPSLDIGGLYLHFGGLILPLYLEVVATFGSHYFP
Ga0255813_105211291	3300023280	Food Waste	LGGRKGKGWRVQLYLDIGGLYLPLGVLSLPLHLEAVATFGSHYFH
Ga0228600_10049611	3300024123	Roots	LVGRKGKGWRIQPSLDIGGLYLPLGGLSLPLHLEVVATFGSHSFP
Ga0209221_10567631	3300027609	Forest Soil	LGGRKGKGWRVKLSLDIGGLYLPLGGLSLPLHLEAVATFGSHYFP
Ga0265354_10269991	3300028016	Rhizosphere	LGGRKGKGWRVQLSLDIGGFYLPLGGLSLPLHLEAVATFGSHYFP
Ga0224573_10171591	3300028019	Roots	LGGRKGQGWRGQPSLDIGVLYLPLGGLSLPLYLEAVTTFGSHYFP
Ga0265765_10167782	3300030879	Soil	LGGRKGKGWRVQLSLDIGGLYLPLGVLSLPLHLEAVATFGSHYFP
Ga0265760_102032681	3300031090	Soil	LGGRKGKGWRVQISLDIGGLYLPVGGLSLPLHLEAAATFGSHYFP
Ga0265760_103024001	3300031090	Soil	LRGRKGKGWRGQPSLDIGGLYLPLGGLSLPLHLEAVATFGSHHFP
Ga0265760_103835432	3300031090	Soil	QGWRVQLSLDIGGLYLPLVGLSLPLHLEVVATFGSHYFP
Ga0310686_1000974901	3300031708	Soil	MFLGERKGKGWRAKSSLYIGGLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1001397582	3300031708	Soil	LGGRKGQGWRVQLSLDIGVLYIPLGVLSLPLHLEVVATFGSHYFP
Ga0310686_1005627751	3300031708	Soil	LGGRKGQGWRVQISLDIGGLYIPLGCLSLPLHFKVVATSGSPYFP
Ga0310686_1005734051	3300031708	Soil	LGGRKGKGWRLQISLDIGGLYIPLGVLSLSLHLEAVATFGS
Ga0310686_1012415521	3300031708	Soil	VEGRGQGWRVQLSLDIEELCLPLGGLSVPLHLEVVATSGSHYFP
Ga0310686_1014870702	3300031708	Soil	LGGRKGKVWRVNSSLDIGGLYLPLGGLDLPLHLEVVATFGSHYFP
Ga0310686_1017451011	3300031708	Soil	LGGRKGQGWRVKISLDIGVLYLPLGGLSLPLHLEAVATFGSHYFP
Ga0310686_1022653431	3300031708	Soil	LGGRNGKGWRVQLSLDIGGLYLPLGGLSLPLHLESLATFGSQYFPW
Ga0310686_1024694151	3300031708	Soil	RKGKGWRVQTSLDIGVLYLPLGILSLPLHLEAVDNFGIHYFP
Ga0310686_1026609521	3300031708	Soil	LGGRKGQGWRFKPSLDTGGLYLPLGGSSLPLHLEAVATFGSHYFP
Ga0310686_1026965001	3300031708	Soil	LGGRNEKGWRVQLSLDIGGLYLPLGGSYLPLHLEAVATFGSHYFP
Ga0310686_1031196611	3300031708	Soil	IFLGGRKGQGWRVQLSLDIGGLYLPLGGLSLPLHLEVVATFGIHYFP
Ga0310686_1035677611	3300031708	Soil	LGGRKGKGWRVKSSLAIGRFYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1035961541	3300031708	Soil	LGGRKGKGWKVKLSLDIGGLYLHIGGLSLPLHLEVVATFGSHYFP
Ga0310686_1036766921	3300031708	Soil	LGGRKGQGWRGQPSLDIGGLYLHFRGLSFLLYLDAVATFGSHYFP
Ga0310686_1041115391	3300031708	Soil	LGGRKGKGWRFQPSLDIGGLYIPLGGLSLPLHLEAIATFGSHYFP
Ga0310686_1044983661	3300031708	Soil	LHGRKGKGWRVKISLCIGGLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1048838101	3300031708	Soil	LGGRKGQGWRGQPSLDIGGLYLPFGGLSLALYLEVVATLEVITSLEQ
Ga0310686_1054022491	3300031708	Soil	RVKYSLDIGVLYIPLGGLSLPLHLEVVDTFGSHYFP
Ga0310686_1057324671	3300031708	Soil	GRKGQGWRVQLSLDIGGLYLPIGGLSLPLHLEVVATIGSHYFP
Ga0310686_1057374302	3300031708	Soil	GRKGKGWRVQLSLDIGGLYLPLGGLSLPLHLEVVATFGSHYFT
Ga0310686_1058356121	3300031708	Soil	LGRRKGQGWRVQISLDVGGLYLPLGGLSLPLHLEAVATFGSHYFP
Ga0310686_1059729921	3300031708	Soil	MKGKGWRGQFSLDIGLFWLPLGGLFLPLYLGVVATFGSHYFH
Ga0310686_1066768361	3300031708	Soil	LGGRKGQGWRVKYSLDIGVLYIPLGGLSLPLNLEFVATFGSHYFP
Ga0310686_1068315961	3300031708	Soil	LGGRKGQGWRVQISFDIGGLYIPIGGLSLPLHLEVVATFGSHYFP
Ga0310686_1069047801	3300031708	Soil	LGGRKGQGWRVQLSLDIGGLYLPLGGLFIPLHLEDVSTFGSHYFP
Ga0310686_1069377991	3300031708	Soil	LVGRKGKGWRIQPSLDIGGLYLPLGGLSLPLHLEAVATFGSHYFP
Ga0310686_1070298561	3300031708	Soil	LGGRKGQGYRVQISLDIGGLYLPLEVLSFPLHLEVVATFGSHYFP
Ga0310686_1073613461	3300031708	Soil	LGGRKGQGWRVQLSLDIGELYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1073815011	3300031708	Soil	LGGRNGKGWRGQTSFDIRELYLPLGFLSLPLYLEVVATFGSHYFP
Ga0310686_1074394061	3300031708	Soil	LGGRKGKGWRVKISLDTGGLYLPLGGLSLPLHLEAVATSRSYYFP
Ga0310686_1079243191	3300031708	Soil	LGGRKGQRWRVKLSLDIGGLYLPLGDLSLPLHLEVVATFGSHYFS
Ga0310686_1079402232	3300031708	Soil	KGWRVQLSLDIGGLYLPLGGLSLPLHLEAVATFGSHYFL
Ga0310686_1080537571	3300031708	Soil	LGGRKGKGWRVQISLDIGGLYLPLVGLSLPLHLEVVATFGSHYFP
Ga0310686_1083754001	3300031708	Soil	MKGKGWRVQISLDIGVLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1086813731	3300031708	Soil	LGGRKGKGWRLQISLDIGGFYLPLGVLSLLLYLEVVATFRSHYFP
Ga0310686_1086836421	3300031708	Soil	LGGRKGKGWRGQPFLDIGGFYLPLGGLSLPLYLEVVATFGSHYFP
Ga0310686_1091179251	3300031708	Soil	LGARKGQGWRGQPSLDIGGFYLPFGGLYLLLYLEVEATFGSH
Ga0310686_1091564281	3300031708	Soil	LGGRKGKGWRVKSFIDIGVLYIPLGGLSLPLRLEVVAIFGSHYFP
Ga0310686_1093638041	3300031708	Soil	LGGRKGKGWRGQPSLDIGGLYLPLGVLSLPLYLEAVATFGSHYFP
Ga0310686_1095732701	3300031708	Soil	LGGRKGKGWRGQPSLDIGGLYLHLGVLSLPLYLEAVATFGSHYFP
Ga0310686_1098394832	3300031708	Soil	LGGRKGEGWRIKISLDIGGLYLPLGGLSLPLHLEVVSTFGIHYFP
Ga0310686_1102670311	3300031708	Soil	LGGRKGQGWRGQPSLDIGGLYLPFGGLLLPLYLEVGATFRSHYFP
Ga0310686_1102809481	3300031708	Soil	LSGRKAQVWRGQPSLDIGGLYLPLGGLSLPLHLEYVATFGTHYFP
Ga0310686_1107376421	3300031708	Soil	LGGRKGQGWRVQVSLDIGGLYLPLVGLSLPLHLEVVATFGSHYFP
Ga0310686_1107688111	3300031708	Soil	LGGRKGQGWRVKTSLDIGGLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1110889301	3300031708	Soil	LGGRKGKGWRGKASLDIGGLYLPLGGLFLPLHLEAVATFGSHYFP
Ga0310686_1116055361	3300031708	Soil	LGRRKGQGWRGQPSLYIGGLYLPFGGLSLPLYFEARATFGSHYFP
Ga0310686_1119278272	3300031708	Soil	LGGRKGQGWRVQISLDNGGLYLPLEILSLPLHLEAVATFGSHYFP
Ga0310686_1121563861	3300031708	Soil	LGGRKGQGWIGQPSLNNGGLYLPFGGLSLPLYLEVVASLGSHY
Ga0310686_1126140041	3300031708	Soil	LGGRKGKGWRVQPYIDIGGFYIPLGGLSLSLHLEAVATFGSHYFP
Ga0310686_1128428631	3300031708	Soil	LGGRKGKGWRVQISLDIGVLYLPLGFLSLPLHLEAVATFGTHYFP
Ga0310686_1132455702	3300031708	Soil	IFLGGRKGKGWRGQPSLDIGVLYLPFGGLSLPLYLEVVASLGIHYFP
Ga0310686_1134518271	3300031708	Soil	LGGRKGKGWKVKISLDIGGLYLPLGGLSLFLHLEVVATFRSHY
Ga0310686_1134775002	3300031708	Soil	LGGRKRQGWRVQISLDIGGLHLPLRGLSLPLHLEVVATFGSHY
Ga0310686_1135134142	3300031708	Soil	RIFLCGRKGKGWRVQISLDIGGFYLPLGGLSLPLHLEVVATFGSQYFP
Ga0310686_1135865691	3300031708	Soil	LGGRKGQGWRVQTSFDIGGLYLPFGGLSLLLYLEVVASLGSHYFP
Ga0310686_1135895471	3300031708	Soil	LGGRKGKGWRVKISLDIVGLYLPLGGLSLPLHLEAVATFGSHYFP
Ga0310686_1136608871	3300031708	Soil	LGGSKEKGWRGQPSLDIGGLYLPFVGLSLPLYLEVVATFGSHYFL
Ga0310686_1137678622	3300031708	Soil	FIISHILLGGRKGQGLRAQPYLDIGGLYLPFGVISLPLYLEVVATFGSHYFL
Ga0310686_1138315672	3300031708	Soil	LGGRKGQVWRAQPSLDIGGLYLPFGGLSLPLYLEAGATFGSHYFP
Ga0310686_1144941262	3300031708	Soil	LGGRKGQGWRVQISLDIGGFYLHLGGLSLPLHLEAVATFGSHYFT
Ga0310686_1145176512	3300031708	Soil	VEGRKGKGWRVQLSLDIGGLYLPLGGLSLPLYFEAIATFGIHYFP
Ga0310686_1146515721	3300031708	Soil	LGGRKGQGWIFKYSLDIGLLYIPLVGLSLPLHLEAVATLGSHYFP
Ga0310686_1149513442	3300031708	Soil	LGGRKGQGWRVQISLDIGGLYIPLGGLSLPLHLEVVATFGSQYFP
Ga0310686_1149544491	3300031708	Soil	TTTNLPTIFLGGRKGQGWRVQISLDIEGFHLPLGGLSLPLHLEVVTTFKSHYIP
Ga0310686_1150481411	3300031708	Soil	LGGRKGQGWRIKISLDIGGLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1151060101	3300031708	Soil	LGGRKGQGRRVELSLDIGGLYLPLGGLYLPLHLEAIATFGSHYFP
Ga0310686_1152080641	3300031708	Soil	LGGRKGEGWRGKTSLHIGGLYLPIGGLSLPLYLEVVATFGSHYFP
Ga0310686_1154664221	3300031708	Soil	YIDVWFLTEGKEWRGQPFIDIGGLYLPFGGVSLPLYLEVVATFGSHFFP
Ga0310686_1157680082	3300031708	Soil	LGGRKGKGWRVQLYLDIGGLYLPLGGLSLPLHLEVVATFGTNYFP
Ga0310686_1160371271	3300031708	Soil	LGGRKGKGWKCQPSLDIRGLYLPFGGLSLPLYLEAVATFGSPYFP
Ga0310686_1165528141	3300031708	Soil	LGGRKGKVWRGQPSLDIGGLYLPFGGLSLPLHLEVVATFGSHYFP
Ga0310686_1165984822	3300031708	Soil	SHIFLGGRKGQGWIGQPSLDIGGLYLHFGGLSLPLYLEVVATFGIHFFL
Ga0310686_1179414541	3300031708	Soil	LGGRKGKGWRVQLSLDIKGLYLPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1182870262	3300031708	Soil	FLGGRKGQGWIGQPSLDIGGLYLPFGGLSLPLYLEVIHSLKQ
Ga0310686_1185536671	3300031708	Soil	LDGRKDQGWRVKISLDIGGLYLPLGGLSLPLHLEAI
Ga0310686_1186325971	3300031708	Soil	LGGRKGQGWRVKISLDIGGLYFPLGGLSLPLHLEVVATFGSHYFP
Ga0310686_1186401352	3300031708	Soil	KGWRVQPSLDIGALYLPLGGLSLRLHLKVVATFGSHYFP
Ga0310686_1186939681	3300031708	Soil	LGGRKGQGWRVQTYLDIRGLYLPLGGLSLPLHLEVVATFGSHDFP
Ga0310686_1188602591	3300031708	Soil	LGGRKGQGWRVQLSLDIGGLYLPLGGLSLPLYLEFVATFGSHYFL
Ga0310686_1189326511	3300031708	Soil	MGGRKGQGWRVQLSLHIGGLYLPLGGLSLPLHLEVVATFGNHYFP
Ga0310686_1190893821	3300031708	Soil	LGGRKEKGWRVQISLDIGGLYLPLGGLSLPLHLEPVATFGSHYFP
Ga0348332_113221641	3300032515	Plant Litter	LGGRKGQGWRVQISLDIGGLYLPLGGLSLPLHLEAVATFGSHYFS
Ga0316214_10653491	3300033545	Roots	LGGRKGQGWRVQISLDIGGLYLPLGGLSLPLHLEAVATFGSHYFP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104259

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences