Metagenome Family F104212

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104212
Family Type	Metagenome
Number of Sequences	100
Average Sequence Length	90 residues
Representative Sequence	PDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Number of Associated Samples	61
Number of Associated Scaffolds	100

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.00 %
% of genes near scaffold ends (potentially truncated)	55.00 %
% of genes from short scaffolds (< 2000 bps)	83.00 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (64.000 % of family members)
Environment Ontology (ENVO)	Unclassified (90.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (64.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 12.82% Coil/Unstructured: 56.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.6.0: automated matches	d5vfaa2	5vfa	0.72121
a.4.6.0: automated matches	d4ixaa_	4ixa	0.72047
a.4.6.1: PhoB-like	d1ys6a1	1ys6	0.71897
a.4.6.0: automated matches	d5ju7a1	5ju7	0.71338
a.4.6.0: automated matches	d2hwva1	2hwv	0.70607

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 100 Family Scaffolds
PF05869	Dam	8.00
PF05063	MT-A70	6.00
PF10926	DUF2800	5.00
PF13481	AAA_25	2.00
PF00476	DNA_pol_A	2.00
PF02075	RuvC	1.00
PF00486	Trans_reg_C	1.00
PF08774	VRR_NUC	1.00
PF03819	MazG	1.00

COG ID	Name	Functional Category	% Frequency in 100 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	12.00
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	2.00
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	1.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.00 %
Unclassified	root	N/A	35.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.00 %
Unclassified	root	N/A	35.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.00 %
Unclassified	root	N/A	35.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.00 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	16.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.00 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100038088	All Organisms → cellular organisms → Bacteria	4690	Open in IMG/M
3300005332\|Ga0066388_100177384	All Organisms → cellular organisms → Bacteria → Proteobacteria	2736	Open in IMG/M
3300005332\|Ga0066388_102073368	Not Available	1022	Open in IMG/M
3300005332\|Ga0066388_107010283	Not Available	567	Open in IMG/M
3300005764\|Ga0066903_100592616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1918	Open in IMG/M
3300005764\|Ga0066903_104533089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300010043\|Ga0126380_10900785	Not Available	735	Open in IMG/M
3300010046\|Ga0126384_11429163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300010361\|Ga0126378_12390485	Not Available	603	Open in IMG/M
3300010868\|Ga0124844_1035535	Not Available	1637	Open in IMG/M
3300016270\|Ga0182036_10455155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300016294\|Ga0182041_10048775	Not Available	2850	Open in IMG/M
3300016294\|Ga0182041_10232705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1489	Open in IMG/M
3300016294\|Ga0182041_11767321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300016319\|Ga0182033_10128839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1918	Open in IMG/M
3300016341\|Ga0182035_10576481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	970	Open in IMG/M
3300016357\|Ga0182032_10671928	Not Available	867	Open in IMG/M
3300016357\|Ga0182032_11294624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	629	Open in IMG/M
3300016371\|Ga0182034_10626405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	910	Open in IMG/M
3300016387\|Ga0182040_11094452	Not Available	667	Open in IMG/M
3300016387\|Ga0182040_11363354	Not Available	600	Open in IMG/M
3300016422\|Ga0182039_10003676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8466	Open in IMG/M
3300016422\|Ga0182039_10272496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1389	Open in IMG/M
3300016445\|Ga0182038_10307328	Not Available	1299	Open in IMG/M
3300031543\|Ga0318516_10004148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6377	Open in IMG/M
3300031543\|Ga0318516_10066517	Not Available	1991	Open in IMG/M
3300031545\|Ga0318541_10012110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3912	Open in IMG/M
3300031545\|Ga0318541_10114085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1461	Open in IMG/M
3300031545\|Ga0318541_10283516	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300031545\|Ga0318541_10409950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	758	Open in IMG/M
3300031546\|Ga0318538_10006852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4469	Open in IMG/M
3300031546\|Ga0318538_10245485	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300031546\|Ga0318538_10260953	Not Available	931	Open in IMG/M
3300031549\|Ga0318571_10067251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1107	Open in IMG/M
3300031561\|Ga0318528_10609868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	585	Open in IMG/M
3300031564\|Ga0318573_10224618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	999	Open in IMG/M
3300031573\|Ga0310915_10210225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1362	Open in IMG/M
3300031640\|Ga0318555_10246074	Not Available	966	Open in IMG/M
3300031680\|Ga0318574_10166637	Not Available	1257	Open in IMG/M
3300031713\|Ga0318496_10146392	Not Available	1288	Open in IMG/M
3300031719\|Ga0306917_10195962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1527	Open in IMG/M
3300031736\|Ga0318501_10241914	Not Available	953	Open in IMG/M
3300031736\|Ga0318501_10400538	Not Available	741	Open in IMG/M
3300031736\|Ga0318501_10467641	Not Available	685	Open in IMG/M
3300031736\|Ga0318501_10832139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	512	Open in IMG/M
3300031744\|Ga0306918_10151982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1710	Open in IMG/M
3300031747\|Ga0318502_10149452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1332	Open in IMG/M
3300031747\|Ga0318502_10294939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	953	Open in IMG/M
3300031747\|Ga0318502_10591610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	668	Open in IMG/M
3300031751\|Ga0318494_10384104	Not Available	814	Open in IMG/M
3300031765\|Ga0318554_10281511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	946	Open in IMG/M
3300031768\|Ga0318509_10751412	Not Available	540	Open in IMG/M
3300031771\|Ga0318546_10062303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2358	Open in IMG/M
3300031771\|Ga0318546_10667900	Not Available	731	Open in IMG/M
3300031771\|Ga0318546_10958677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602	Open in IMG/M
3300031793\|Ga0318548_10054939	All Organisms → cellular organisms → Bacteria → Proteobacteria	1829	Open in IMG/M
3300031793\|Ga0318548_10337457	Not Available	740	Open in IMG/M
3300031795\|Ga0318557_10504389	Not Available	556	Open in IMG/M
3300031819\|Ga0318568_10342159	Not Available	931	Open in IMG/M
3300031821\|Ga0318567_10327599	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300031833\|Ga0310917_10939205	Not Available	581	Open in IMG/M
3300031845\|Ga0318511_10013446	Not Available	2837	Open in IMG/M
3300031845\|Ga0318511_10319946	Not Available	703	Open in IMG/M
3300031859\|Ga0318527_10481874	Not Available	529	Open in IMG/M
3300031879\|Ga0306919_11374111	Not Available	533	Open in IMG/M
3300031880\|Ga0318544_10014325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2569	Open in IMG/M
3300031880\|Ga0318544_10243472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300031890\|Ga0306925_10218156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2057	Open in IMG/M
3300031890\|Ga0306925_11206663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300031893\|Ga0318536_10085761	Not Available	1565	Open in IMG/M
3300031897\|Ga0318520_10721302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	623	Open in IMG/M
3300031897\|Ga0318520_10893756	Not Available	559	Open in IMG/M
3300031941\|Ga0310912_10083818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2320	Open in IMG/M
3300031945\|Ga0310913_10764378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	682	Open in IMG/M
3300031945\|Ga0310913_10819506	Not Available	656	Open in IMG/M
3300031945\|Ga0310913_11004106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300031946\|Ga0310910_10181576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1625	Open in IMG/M
3300031946\|Ga0310910_11341213	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031947\|Ga0310909_10155300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1884	Open in IMG/M
3300031947\|Ga0310909_10567716	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300031947\|Ga0310909_11334638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	576	Open in IMG/M
3300031981\|Ga0318531_10408322	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300032001\|Ga0306922_10074970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3544	Open in IMG/M
3300032001\|Ga0306922_10240279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1946	Open in IMG/M
3300032001\|Ga0306922_10359133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1562	Open in IMG/M
3300032001\|Ga0306922_11809108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	601	Open in IMG/M
3300032035\|Ga0310911_10922415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	504	Open in IMG/M
3300032051\|Ga0318532_10094966	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300032054\|Ga0318570_10260279	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300032055\|Ga0318575_10579949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	569	Open in IMG/M
3300032059\|Ga0318533_10250234	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300032059\|Ga0318533_10892788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	652	Open in IMG/M
3300032059\|Ga0318533_11305847	Not Available	530	Open in IMG/M
3300032063\|Ga0318504_10013887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2884	Open in IMG/M
3300032064\|Ga0318510_10241580	Not Available	740	Open in IMG/M
3300032065\|Ga0318513_10346140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300032091\|Ga0318577_10013708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3252	Open in IMG/M
3300032261\|Ga0306920_100362457	All Organisms → cellular organisms → Bacteria → Proteobacteria	2156	Open in IMG/M
3300032261\|Ga0306920_100369332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2134	Open in IMG/M
3300032261\|Ga0306920_103443693	Not Available	586	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.00%
Loam	Environmental → Terrestrial → Soil → Loam	7.00%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	90.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	64.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1000380884	3300005332	Tropical Forest Soil	VAQPDICPHCGQPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQNGYRIRSAS*
Ga0066388_1001773843	3300005332	Tropical Forest Soil	MMRADICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRSIVWDDPAGGPECRHTIFVHISQLNRALALHGLTMRSEDGGYRIRSMA*
Ga0066388_1020733681	3300005332	Tropical Forest Soil	MTEVSKTCPICGQPIVPPVRDLSPIKQRILEAVKRRPGVSAEELRSIVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSE
Ga0066388_1070102832	3300005332	Tropical Forest Soil	MKIHQSAICPTCNQPIVPPIPDLTPLKQRILEAVKRRPGISAEELRAAVWDDPSGGPECRHTIFVHISQLNHVLALHGLTMRSEGGGYRIRAVS*
Ga0066903_1005926163	3300005764	Tropical Forest Soil	MMRAEICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRCAVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIKSTS*
Ga0066903_1045330892	3300005764	Tropical Forest Soil	MIDLPICPCCGQPIVPPVPDLTPIKQRILNAVKRRPGISAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLMMRSEAGGYRIRGVR*
Ga0126380_109007851	3300010043	Tropical Forest Soil	QPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQNGYRIRSAS*
Ga0126384_114291632	3300010046	Tropical Forest Soil	MTDPPICPCCGQPIVPPVPDLTPIKQRILDAVKRRPGTSAEELRAIVWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEAGGYQIRGVR*
Ga0126378_123904852	3300010361	Tropical Forest Soil	MMRADICSHCGQPIVPPVRDLTPIKQRILDAVKRRPGISAEELRSIVWDDPAGGPECRHTIFVHISQLNRALALHGLTMRS
Ga0124844_10355353	3300010868	Tropical Forest Soil	VAQPDICPHCGQPIVPAGLALPAIKARIYEAVRRRPGISAETLRGIVWDDPSGGPDCRHTIYVHIYQTNRILAPHGLKIRFQ
Ga0182036_104551551	3300016270	Soil	PDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0182041_100487754	3300016294	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYR
Ga0182041_102327053	3300016294	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0182041_117673211	3300016294	Soil	PAICSTCGQPIVPPVPDLTPLKRRILDLVKRHPGISADELRLLVWDDPSGGPECRHTIFVHISQLNRVLALYGLTMRSQGGGYRIRGVK
Ga0182033_101288392	3300016319	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0182035_105764812	3300016341	Soil	MKPEPEICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0182032_106719282	3300016357	Soil	CPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0182032_112946241	3300016357	Soil	QPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0182034_106264052	3300016371	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0182040_110944522	3300016387	Soil	MTQGRICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0182040_113633542	3300016387	Soil	AARDDRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0182039_100036764	3300016422	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLMMRSEGGGYRVRTAP
Ga0182039_102724965	3300016422	Soil	PIPDLTPLKQRILESVKRRPGISAEQLRSLVWDDPSGGPEDRKVLHVHVSQLNRLLAPRGICVRSEGGGYRVKAVS
Ga0182038_103073282	3300016445	Soil	MDQATGIPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318516_100041483	3300031543	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318516_100665174	3300031543	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318541_100121105	3300031545	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318541_101140852	3300031545	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0318541_102835163	3300031545	Soil	LKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318541_104099501	3300031545	Soil	SCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318538_100068524	3300031546	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELCATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318538_102454852	3300031546	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318538_102609531	3300031546	Soil	PMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318571_100672513	3300031549	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGY
Ga0318528_106098682	3300031561	Soil	VCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318573_102246181	3300031564	Soil	QPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0310915_102102253	3300031573	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318555_102460741	3300031640	Soil	MLTKTNICSACGQPIVPPVPDLTPIKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYR
Ga0318574_101666371	3300031680	Soil	DRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318496_101463924	3300031713	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVAS
Ga0306917_101959622	3300031719	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318501_102419142	3300031736	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYR
Ga0318501_104005381	3300031736	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGA
Ga0318501_104676411	3300031736	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYR
Ga0318501_108321391	3300031736	Soil	TCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0306918_101519824	3300031744	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSA
Ga0318502_101494521	3300031747	Soil	ARDDRISHAAARAALGEKPMTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318502_102949391	3300031747	Soil	RQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIRVVP
Ga0318502_105916101	3300031747	Soil	VEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318494_103841041	3300031751	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318554_102815111	3300031765	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318509_107514122	3300031768	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318546_100623033	3300031771	Soil	VPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRYTIFVHISQLNRALAEFGLTMRSEGGGYRIRAVS
Ga0318546_106679003	3300031771	Soil	PDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318546_109586771	3300031771	Soil	AQSAGGSGAFASDGGDMLTHSKPNICSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0318548_100549392	3300031793	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318548_103374573	3300031793	Soil	LKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTVP
Ga0318557_105043891	3300031795	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVP
Ga0318568_103421591	3300031819	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRS
Ga0318567_103275991	3300031821	Soil	MTARQVEVCPRCGQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRATS
Ga0310917_109392051	3300031833	Soil	ACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318511_100134461	3300031845	Soil	MLTKPDICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0318511_103199463	3300031845	Soil	EPEICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRPTVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318527_104818742	3300031859	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0306919_113741111	3300031879	Soil	MKPEICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318544_100143251	3300031880	Soil	DICLACGQPIVPPVPGLTPLKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRVRTAP
Ga0318544_102434722	3300031880	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLM
Ga0306925_102181562	3300031890	Soil	MLTKTNICSACGQPIVPPVPDLTPIKQRILDAVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTAP
Ga0306925_112066631	3300031890	Soil	MLERNSVEICPHCRQPLVPPVPNLTPIKQRILDTVKRRPGISAEELRSIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0318536_100857611	3300031893	Soil	MTPKPEICPTCRQPIVPPVTDLTPLKRRILDSVKRRPGISAEELRCAVWADDPNGGPECRHTIFVHISQLNRALAVFGLTMRSEGGGYRIRSVPS
Ga0318520_107213021	3300031897	Soil	MTARQVEVCSCCGQPIVPPVPDLTPLKRRILDTVQRLPGISAEELRGIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVP
Ga0318520_108937562	3300031897	Soil	MLTHSKPNICSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0310912_100838186	3300031941	Soil	MDQATGTPIESALKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAA
Ga0310913_107643781	3300031945	Soil	EICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0310913_108195061	3300031945	Soil	MTARTPKTCSACGQPIIPPIPDLPPTKLRILETVKRRPGISAEELRSLVWDDPSGGPEDRKVLHVHVSQLNRLLAERGIVVRSEGGGYRIRST
Ga0310913_110041062	3300031945	Soil	CGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0310910_101815763	3300031946	Soil	MKPEPEICPTCGPPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0310910_113412132	3300031946	Soil	MLIKPDICSACGQPIVPPVPGLTPLKQRILDTVKRRPGITAEELRATVWDDPSGGPECRHTIFVHISQLNHSLAELGLTMRSEGGGYRIRTVS
Ga0310909_101553003	3300031947	Soil	MKPEPEICPTCGSPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSVS
Ga0310909_105677163	3300031947	Soil	MKPELKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRYTIFVHISQLNRSLAEFGLTMRSE
Ga0310909_113346381	3300031947	Soil	VPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318531_104083222	3300031981	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLT
Ga0306922_100749702	3300032001	Soil	VPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVS
Ga0306922_102402794	3300032001	Soil	SQSRQPEICSMCGQPIVPPVPDLTPIKQRILNIVKRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGRGYRIRAVS
Ga0306922_103591331	3300032001	Soil	PVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0306922_118091081	3300032001	Soil	EICPTCGSPIVPPVPELTPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0310911_109224151	3300032035	Soil	GQPIVPPVPDLTPLKRKILDTVQRRPGISAEELRSLVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318532_100949661	3300032051	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRIR
Ga0318570_102602792	3300032054	Soil	MISRQPDICPTCRQPIVPPIRDLTPIKQRILDAVKRRPGISAEELRSIAWDDPSGGPECRHTIFVHISQLNRSLALHGLTMRSEGGGYRLRVVP
Ga0318575_105799492	3300032055	Soil	PPIVPPVPDLTPIKQRIFDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAT
Ga0318533_102502342	3300032059	Soil	LKPEPKICSACGQPIVPPVPDLTPIKQRILNTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSGAAATESGPYREWGP
Ga0318533_108927882	3300032059	Soil	VPPVPPIKQRILDTVKRRPGVSAEELRAIVWDDPSGGPECRHTIFVHISQLNRALAVFGLTIRSEGGGYRIRSTA
Ga0318533_113058472	3300032059	Soil	MTPKPEICPTCRQPIVPPVPDLTPLKRKILDAVRRRPGISAEELRGIVWNDPSGGPECRHTIFVHISQLNNALALHGLTMRSEGGGYRIRSVP
Ga0318504_100138871	3300032063	Soil	QPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318510_102415801	3300032064	Soil	CSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0318513_103461402	3300032065	Soil	MLARSKPDICSHCGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRTLALHGLTMRSEGGGYRIRSVS
Ga0318577_100137081	3300032091	Soil	PVPDLTPIKQRILDTVKRRPGISAEELRTIVWDDPSGGPECRHTIFVHISQLNRALALHGLTMRSEGGGYRIRSAL
Ga0306920_1003624575	3300032261	Soil	MKPELKICPTCGSPIVPPVPGLTPLKQRILDTVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNRSLAELGLTMRSEGGGYRIRTVP
Ga0306920_1003693321	3300032261	Soil	CSACGQPIVPPVPDLTPIKQRILDTVKRRPGISAEELRASVWDDPSGGPECRHTIFVHISQLNRSLAEFGLTMRSEGGGYRIRAVP
Ga0306920_1034436932	3300032261	Soil	SMIEKLERNSAKTCPACGQPIVPPVPDLTPIKQCILDAVKRRPGISAEELRATVWDDPSGGPECRHTIFVHISQLNHALALHGLTMRSEGGGYRIRATS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences