Metagenome / Metatranscriptome Family F104059

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104059
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	87 residues
Representative Sequence	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS
Number of Associated Samples	76
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	31.68 %
% of genes near scaffold ends (potentially truncated)	28.71 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.327 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere (10.891 % of family members)
Environment Ontology (ENVO)	Unclassified (28.713 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.525 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.77% β-sheet: 45.61% Coil/Unstructured: 45.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.128.1.1: Hypothetical protein YojF	d1njha1	1njh	0.66142
e.62.1.1: HemS/ChuS-like	d2hq2a2	2hq2	0.6302
e.62.1.2: ChuX-like	d2hqva1	2hqv	0.62362
b.55.1.0: automated matches	d4gmxb_	4gmx	0.57658
b.115.1.1: Calcium-mediated lectin	d1vyya_	1vyy	0.57415

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF05746	DALR_1	2.97
PF07690	MFS_1	2.97
PF04960	Glutaminase	1.98
PF00583	Acetyltransf_1	1.98
PF01326	PPDK_N	1.98
PF01292	Ni_hydr_CYTB	0.99
PF13376	OmdA	0.99
PF13602	ADH_zinc_N_2	0.99
PF00355	Rieske	0.99
PF08031	BBE	0.99
PF01594	AI-2E_transport	0.99
PF03160	Calx-beta	0.99
PF01479	S4	0.99
PF07676	PD40	0.99
PF01022	HTH_5	0.99
PF00082	Peptidase_S8	0.99
PF00480	ROK	0.99
PF01872	RibD_C	0.99
PF01625	PMSR	0.99
PF00171	Aldedh	0.99
PF13343	SBP_bac_6	0.99
PF13419	HAD_2	0.99
PF07885	Ion_trans_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.97
COG0751	Glycyl-tRNA synthetase, beta subunit	Translation, ribosomal structure and biogenesis [J]	2.97
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	1.98
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.98
COG2066	Glutaminase	Amino acid transport and metabolism [E]	1.98
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.99
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.99
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.99
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.99
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.99
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.99
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.99
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.99
COG3038	Cytochrome b561	Energy production and conversion [C]	0.99
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.99
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.99
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
All Organisms	root	All Organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
cellular organisms	root	All Organisms → cellular organisms	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.86 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	2.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.86 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	2.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.86 %
Jiangella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella	2.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.86 %
Jiangella mangrovi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella mangrovi	2.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_10996605	Not Available	1255	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2261020	Not Available	1090	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10743213	Not Available	634	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100529323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1844	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101159576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300000881\|JGI10215J12807_1005846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300000891\|JGI10214J12806_12476515	Not Available	538	Open in IMG/M
3300001431\|F14TB_101899692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300004114\|Ga0062593_100716472	Not Available	979	Open in IMG/M
3300004114\|Ga0062593_102275261	Not Available	609	Open in IMG/M
3300004114\|Ga0062593_102662742	Not Available	569	Open in IMG/M
3300004479\|Ga0062595_100387331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella mangrovi	994	Open in IMG/M
3300004480\|Ga0062592_100249918	Not Available	1299	Open in IMG/M
3300004643\|Ga0062591_100634793	Not Available	952	Open in IMG/M
3300005093\|Ga0062594_100302990	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300005168\|Ga0066809_10084896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	756	Open in IMG/M
3300005289\|Ga0065704_10245078	Not Available	1004	Open in IMG/M
3300005332\|Ga0066388_100596029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1728	Open in IMG/M
3300005332\|Ga0066388_103801535	Not Available	770	Open in IMG/M
3300005332\|Ga0066388_105461608	Not Available	644	Open in IMG/M
3300005334\|Ga0068869_100227370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1481	Open in IMG/M
3300005578\|Ga0068854_100834347	Not Available	806	Open in IMG/M
3300005713\|Ga0066905_100106033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1922	Open in IMG/M
3300005764\|Ga0066903_100007785	All Organisms → cellular organisms → Bacteria	9773	Open in IMG/M
3300005764\|Ga0066903_100645009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1849	Open in IMG/M
3300005764\|Ga0066903_101850894	Not Available	1155	Open in IMG/M
3300005764\|Ga0066903_104111449	Not Available	779	Open in IMG/M
3300006580\|Ga0074049_10069444	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300006581\|Ga0074048_12683854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1013	Open in IMG/M
3300006852\|Ga0075433_10536974	Not Available	1028	Open in IMG/M
3300006852\|Ga0075433_11839697	Not Available	520	Open in IMG/M
3300006854\|Ga0075425_100080718	All Organisms → cellular organisms → Bacteria	3677	Open in IMG/M
3300006880\|Ga0075429_100902223	Not Available	773	Open in IMG/M
3300006880\|Ga0075429_101542080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300006903\|Ga0075426_11307487	Not Available	550	Open in IMG/M
3300006904\|Ga0075424_102125939	Not Available	591	Open in IMG/M
3300009094\|Ga0111539_12287413	Not Available	627	Open in IMG/M
3300009147\|Ga0114129_10558955	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300009174\|Ga0105241_11724036	Not Available	609	Open in IMG/M
3300009176\|Ga0105242_10046852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella mangrovi	3509	Open in IMG/M
3300009800\|Ga0105069_1031062	Not Available	594	Open in IMG/M
3300010047\|Ga0126382_11876516	Not Available	566	Open in IMG/M
3300010362\|Ga0126377_10077068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2983	Open in IMG/M
3300010366\|Ga0126379_10417557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1394	Open in IMG/M
3300010398\|Ga0126383_12235810	Not Available	633	Open in IMG/M
3300010398\|Ga0126383_13174356	Not Available	537	Open in IMG/M
3300011119\|Ga0105246_11389798	Not Available	654	Open in IMG/M
3300011412\|Ga0137424_1012839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1157	Open in IMG/M
3300012902\|Ga0157291_10179471	Not Available	654	Open in IMG/M
3300012957\|Ga0164303_10561479	Not Available	743	Open in IMG/M
3300012958\|Ga0164299_10817014	Not Available	667	Open in IMG/M
3300012960\|Ga0164301_10612081	Not Available	806	Open in IMG/M
3300012971\|Ga0126369_11439226	Not Available	779	Open in IMG/M
3300014326\|Ga0157380_11333368	Not Available	766	Open in IMG/M
3300015200\|Ga0173480_10550946	Not Available	699	Open in IMG/M
3300015371\|Ga0132258_10949223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2172	Open in IMG/M
3300015371\|Ga0132258_11265518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella mangrovi	1865	Open in IMG/M
3300015371\|Ga0132258_11746945	Not Available	1568	Open in IMG/M
3300015371\|Ga0132258_12029906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1446	Open in IMG/M
3300015371\|Ga0132258_13337760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300015371\|Ga0132258_13456217	Not Available	1083	Open in IMG/M
3300015372\|Ga0132256_100601629	Not Available	1214	Open in IMG/M
3300015372\|Ga0132256_102633529	Not Available	603	Open in IMG/M
3300015372\|Ga0132256_102725594	Not Available	593	Open in IMG/M
3300015372\|Ga0132256_103302555	Not Available	542	Open in IMG/M
3300015373\|Ga0132257_101441918	Not Available	877	Open in IMG/M
3300015373\|Ga0132257_103696538	Not Available	557	Open in IMG/M
3300015374\|Ga0132255_101360706	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300015374\|Ga0132255_106205438	Not Available	506	Open in IMG/M
3300015374\|Ga0132255_106320239	Not Available	501	Open in IMG/M
3300016294\|Ga0182041_11335920	Not Available	657	Open in IMG/M
3300017966\|Ga0187776_10964356	Not Available	624	Open in IMG/M
3300018032\|Ga0187788_10051702	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300018064\|Ga0187773_10633864	Not Available	658	Open in IMG/M
3300018067\|Ga0184611_1319407	Not Available	537	Open in IMG/M
3300018072\|Ga0184635_10343044	Not Available	575	Open in IMG/M
3300018073\|Ga0184624_10118799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1144	Open in IMG/M
3300019356\|Ga0173481_10028494	Not Available	1770	Open in IMG/M
3300019356\|Ga0173481_10194190	Not Available	875	Open in IMG/M
3300021951\|Ga0222624_1496518	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300022756\|Ga0222622_10437379	Not Available	926	Open in IMG/M
3300025899\|Ga0207642_10895456	Not Available	568	Open in IMG/M
3300025938\|Ga0207704_11564761	Not Available	566	Open in IMG/M
3300025972\|Ga0207668_10458218	Not Available	1090	Open in IMG/M
3300028592\|Ga0247822_11859543	Not Available	515	Open in IMG/M
3300028802\|Ga0307503_10007108	All Organisms → cellular organisms → Bacteria → Proteobacteria	3085	Open in IMG/M
3300028889\|Ga0247827_10157136	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300028889\|Ga0247827_10693415	Not Available	663	Open in IMG/M
3300028889\|Ga0247827_11296716	Not Available	509	Open in IMG/M
3300031170\|Ga0307498_10058928	Not Available	1067	Open in IMG/M
3300031226\|Ga0307497_10402408	Not Available	654	Open in IMG/M
3300031543\|Ga0318516_10566515	Not Available	650	Open in IMG/M
3300031847\|Ga0310907_10884925	Not Available	504	Open in IMG/M
3300031892\|Ga0310893_10233255	Not Available	756	Open in IMG/M
3300031910\|Ga0306923_12119471	Not Available	567	Open in IMG/M
3300031943\|Ga0310885_10597058	Not Available	612	Open in IMG/M
3300032012\|Ga0310902_10934502	Not Available	599	Open in IMG/M
3300032089\|Ga0318525_10461039	Not Available	651	Open in IMG/M
3300032122\|Ga0310895_10532345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	595	Open in IMG/M
3300033550\|Ga0247829_10047314	All Organisms → cellular organisms → Bacteria	3003	Open in IMG/M
3300033551\|Ga0247830_11603611	Not Available	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.34%
Host-Associated	Host-Associated	33.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.40%
Plants	Host-Associated → Plants	33.66%
Aquatic	Environmental → Aquatic	5.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.84%
Sediment	Environmental → Aquatic → Sediment	4.95%
Freshwater	Environmental → Aquatic → Freshwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	11.88%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	11.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0045.00007170	2162886013	Switchgrass Rhizosphere	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALHKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAEENAELYIVVS
ICChiseqgaiiDRAFT_22610202	3300000033	Soil	MTRHDFEAWLDHHLDQPVLVEWRTLSGGMVTDATSTTGVLHKDGGGEYHAGDAHIDLTDFDAADFGGEGVVVELLREXAELYIAVS*
ICChiseqgaiiFebDRAFT_107432132	3300000363	Soil	MTRHDFEAWLDHHLEQSVLVEWRDLDGGLVTDTTSTTGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS*
INPhiseqgaiiFebDRAFT_1005293232	3300000364	Soil	MTRHDLEAWLDHHLEQLVLVEWHGLYGGEVAEKVSATGVLRKESGAYLAGDAPIDLTDFEAADFANEGVVVELGRENVELYIALS*
INPhiseqgaiiFebDRAFT_1011595762	3300000364	Soil	MTRXDFEAWLDHXLDQAVLVEWRELDGGLVTDTTSMTGALRKDGEGEYHAGDAHIDLTDFDAADFGGEGVVVELLRESAELYIAVS*
JGI10215J12807_10058462	3300000881	Soil	HDFEAWLDHHLDQAVLVEWRELDGGLVTDKTSTTGALRKDGDGEYHAGEAHIDLGDFEAADFGGDGVVVELAQENAELYIAVS*
JGI10214J12806_124765151	3300000891	Soil	SCPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDTISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQESAELYIAVS*
F14TB_1018996921	3300001431	Soil	MTRHDFEAWLDHHLDQPVLVEWRTLSGGEVTDKTSTTGVLRKDRGGEYHAGDAHIDLTDFDAADFGXXXXXVELLRESAELYIAVS*
Ga0062593_1007164722	3300004114	Soil	LDQPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVVVELLREDAELYIAVS*
Ga0062593_1022752612	3300004114	Soil	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDTISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQESAELYIAVS*
Ga0062593_1026627423	3300004114	Soil	MLLSAMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKTSTTGALRKDGDGEYHAGEAHIDLGDFEAADFGGDGVVVELAQEN
Ga0062595_1003873312	3300004479	Soil	MTRRDFEAWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVEVLREDAELYIAVS*
Ga0062592_1002499182	3300004480	Soil	MMLYSRPTMTRHDFEAWLDHHLDQPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVVVELLREDAELYIAVS*
Ga0062591_1006347931	3300004643	Soil	QPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVVVELLREDAELYIAVS*
Ga0062594_1003029902	3300005093	Soil	MTRHDFEAWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVEVLREDAELYIAVS*
Ga0066809_100848962	3300005168	Soil	MLWSRPAVTRRDFEAWLDHHIDQPVLVEKRVLSGGEITSKISTTGVLRKDRGEYLAGDSPIDFTDFAAADFAAEGVIVELDEGVELYIALST*
Ga0065704_102450782	3300005289	Switchgrass Rhizosphere	QAVLVEWRELDGGLVTDKISMTGALHKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAEENAELYIVVS*
Ga0066388_1005960293	3300005332	Tropical Forest Soil	VTLHDFEAWLDHHLEQPVLVEWRSLSGGEIFESIATRGVLRKEGGEYVAGDAPIDLTDFEEADFVNEGVLVELGKENVELYVAFEQPPDLA*
Ga0066388_1038015351	3300005332	Tropical Forest Soil	MTRHDFEAWLDHHLDQSVLVEWRELDGGLVTDTTSTSGVLRKHGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVG*
Ga0066388_1054616082	3300005332	Tropical Forest Soil	MTRHDFEAWLDHHLDQAVLVEWRELEGGLVTDKTSMAGALRKDGDGEYHAGEAHIDLGDFEAADFGRDGVVVELAQENAELYIAVS*
Ga0068869_1002273702	3300005334	Miscanthus Rhizosphere	MTRHDFEAWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVE
Ga0068854_1008343472	3300005578	Corn Rhizosphere	MTRHDFEPWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVEVLREDAELYIAVS*
Ga0066905_1001060334	3300005713	Tropical Forest Soil	MTRHDFEAWLDHHLEQSVLVEWRDLDGGLVADTTSTAGVLRKEGAEYHAGDAHIDLTDFDAADFGGDGVVVELLREDAELYIAVT*
Ga0066903_10000778511	3300005764	Tropical Forest Soil	MTRHDFEAWLDHHLDQPVLVEWRVLDGGVIESKESTTALLRKESGEYLAGDAPIDFTDFEAADFENDGVVVELGAENVELYIALN*
Ga0066903_1006450092	3300005764	Tropical Forest Soil	MDNARSLPSVRAMTRHDLEAWLDHHLDQSVLVEWHSLYGGEVAEKISRTGVLRKENGGYMAGEALIDLTDFETADFENEGVVVELGKENVELYIALS*
Ga0066903_1018508943	3300005764	Tropical Forest Soil	MTRHDFEAWLDHHLDQRVLVEWRDLDGGLVTDTTSMMGVLHKNGAEYLAGDAHIDLTDFEAADFGGDGVIVELLREDAELYIAVS*
Ga0066903_1041114492	3300005764	Tropical Forest Soil	MLVSAMTRHDFEAWLDHHLNRAVLVEWRTLSSGMVTDMIRSRGPLRKDGDGEYHAGDAHIDLGDFEAADFGGDGVVVELVDENAELYIAVG*
Ga0074049_100694442	3300006580	Soil	VTRRDFEAWLDHHIDQPVLVEKRVLSGGEITSKISTTGVLRKDRGEYLAGDSPIDFTDFAAADFAAEGVIVELDEGVELYIALST*
Ga0074048_126838543	3300006581	Soil	MTRHDFEAWLDHHLNQPVLVEWRTLSGGEVADKTSTTGVLRKDGGGEYHAGDAHIDLSDFDAADFGGDGVVVELLRESAELYIAVS*
Ga0075433_105369742	3300006852	Populus Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRTLSGGMVTNATSTTGALCKDGGGEYHAGDAHIDLTDFEAADFGGDGVIVELLRESAELYIAVS*
Ga0075433_118396972	3300006852	Populus Rhizosphere	LDHHVDQSVLVEWRLLESGMIESTESTTGVLHKERGEYLAGDAPIDLTAFEAADFENDGVVVELCKQNVELYIALN*
Ga0075425_1000807182	3300006854	Populus Rhizosphere	MTRHDFEAWLDHHVDQSVLVEWRLLESGMIESTESTTGVLHKERGEYLAGDAPIDLTAFEAADFENDGVVVELCKQNVELYIALN*
Ga0075429_1009022231	3300006880	Populus Rhizosphere	MLPSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS*
Ga0075429_1015420802	3300006880	Populus Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKTSTTGALRKDGDGEYHAGEAHIDLGDFEAADFGGDGVVVELAQENAELYIAVS*
Ga0075426_113074871	3300006903	Populus Rhizosphere	LRALGWDAAAMTRHDFEAWLDHHVDQSVLVEWRLLESGMIESTESTTGVLHKERGEYLAGDAPIDLTAFEAADFENDGVVVELCKQNVELYIALN*
Ga0075424_1021259391	3300006904	Populus Rhizosphere	LRALGWDAAAMTRHDFEAWLDHHVDQSVLVEWRLLESGMIESTESTTGVLHKERGEYLAGDAPIDLTAFEAADFENDGVVVELCEQNVELYIALN*
Ga0111539_122874131	3300009094	Populus Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS*
Ga0114129_105589551	3300009147	Populus Rhizosphere	MLLSAMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKTSTTGALRKDGDGEYHAGEAHIDLGDFEAADFGGDGVVVELAQENAELYIAVS*
Ga0105241_117240361	3300009174	Corn Rhizosphere	PMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGPLRKDGEGEYHAGEAHIDLGDFEAADFGGDGIIVELAQEKAELYIAVS*
Ga0105242_100468525	3300009176	Miscanthus Rhizosphere	MMRHDFEAWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS*
Ga0105069_10310621	3300009800	Groundwater Sand	MTRHDFEAWLDHHLDQSVLVEWRTLSDGVVTDKTSTTGVLRKDGGDQYHAGDAHIDLTDFDAADFGGEGVVVELLRESAELYIAVS*
Ga0126382_118765162	3300010047	Tropical Forest Soil	MTRHDFEAWLDHHLDQPVLVEWRDLAGGLVTDTTSTTGVLRKSGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS*
Ga0126377_100770683	3300010362	Tropical Forest Soil	MTRHDFEAWLDHHLDQSVLVEWRDLDGGLVADTTSTAGVLRKEGAEYHAGDAHIDLTDFDAADFGGDGVVVELLREDAELYIAVT*
Ga0126379_104175571	3300010366	Tropical Forest Soil	HLEQPVLVEWRSLSGGEVFESIATRGVLRKEGGEYVAGDAPIDLTDFEEADFVNEGVLVELGKENVELYVAFEQPPDLA*
Ga0126383_122358102	3300010398	Tropical Forest Soil	VTLHDFEAWLDHHLEQPVLVEWRSLSGGEIFESIATRGVLRKEGGEYVAGDAPIDLTDFEEADFVNEGVLVELGKENVELYVAFEQPPDLASLTD*
Ga0126383_131743561	3300010398	Tropical Forest Soil	MTRHDFEAWLDHHLDQPVYVEWRTLYGGEVTDKTMLTGALRKDGDGEYHAGDVHIDLVDFEAADFGGDGVIVELASENAELYIEVNQDTPRAAHVDVASTSST*
Ga0105246_113897982	3300011119	Miscanthus Rhizosphere	LLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEAADFGGDGIIVELAQEKAELYIAVS*
Ga0137424_10128391	3300011412	Soil	MLVAPMTRHDFEAWLDHHLDQSVLVEWRELDAGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEAADFGGDGIIVEL
Ga0157291_101794711	3300012902	Soil	EAWLDHHLDQAVLVEWRELDGGLVTDTISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQESAELYIAVS*
Ga0164303_105614791	3300012957	Soil	DHAVPAMTRHDFEAWLDHHLDQPVLVEWRTLSGGMVTDATSTTGALCKDGGGEYHAGDAHIDLTDFEAADFGGDGVIVELLRESAELYIAVS*
Ga0164299_108170141	3300012958	Soil	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDMTSMTGALRKDGVGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS*
Ga0164301_106120811	3300012960	Soil	LEQSVLVEWRDLDGGLVTYTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGGDGVIVELLRESAELYIAVS*
Ga0126369_114392261	3300012971	Tropical Forest Soil	MTRHDLEAWLDHHLDQPVLVEWHSLYGGEVAEKLARTGILRKEHDAYLAGDALIDLTDFETADFENDGVVVELGKENVE
Ga0157380_113333682	3300014326	Switchgrass Rhizosphere	MLLSAMIRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKTSMTGALCKDGEGEYHAGEAHIDLGDFEVADFGGDGVIVELAQENAE
Ga0173480_105509461	3300015200	Soil	LDQAVLVEWRELDGGLVTDTISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQESAELYIAVS*
Ga0132258_109492232	3300015371	Arabidopsis Rhizosphere	MLLAPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDMTSMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGEGVIVELAQESAELYIAVS*
Ga0132258_112655182	3300015371	Arabidopsis Rhizosphere	MTRHDFEAWLEHHLEQSVLVEWRDLDGGLVTGTTSTTGVLRKDGGEYLAGDAHIDLTDLEAADFGNDGVIVELLRQDAELYIAVS*
Ga0132258_117469452	3300015371	Arabidopsis Rhizosphere	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKVSMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGEGVIVELAQEKAELYIAVS*
Ga0132258_120299061	3300015371	Arabidopsis Rhizosphere	MLLAQMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDMTAMTGPLRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS*
Ga0132258_133377602	3300015371	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRTLSGGMVTDATSTTGALCKDGGGEYHAGDAHIDLTDFEAADFGGDGVIVELLRESAELYIAVS*
Ga0132258_134562172	3300015371	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLNQSVVVEWRDLDGGLVTDTTSTSGVLRKDGREYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIALS*
Ga0132256_1006016293	3300015372	Arabidopsis Rhizosphere	MLLAQMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDMTSMTGALRKDGVGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS*
Ga0132256_1026335291	3300015372	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKVSMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGEGVIVELAQEKAELYIAVS*
Ga0132256_1027255942	3300015372	Arabidopsis Rhizosphere	MTRHDFEAWLEHHLEQSVLVEWRDLDGGLVTGTTSTTGVLRKDGGEYLAGDAHIDLTDLEAADFGNDGVIVELLRQDA
Ga0132256_1033025551	3300015372	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDEAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEDAELYIAVS*
Ga0132257_1014419181	3300015373	Arabidopsis Rhizosphere	PMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDMTSMTGALRKDGVGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS*
Ga0132257_1036965381	3300015373	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDQHVLVEWRTLSGGMVADATSTTGLLHKDGGGEYHAGDAHVDLTDFEAADFGGEGVIVELLRESAELYIAPTGDTMTRTS*
Ga0132255_1013607062	3300015374	Arabidopsis Rhizosphere	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLITDKISMTGALRKDGEGEYHAGEAHIALGDFEAADFGGDGVIVELAQEKAELYIAVR*
Ga0132255_1062054381	3300015374	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDQHVLVEWRTLSGGMVADATSTTGLLHKDGGGEYHAGDAHVDLTDFEAADFGGEGVIVELLRESVELYIAPTGDTMTR
Ga0132255_1063202391	3300015374	Arabidopsis Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRELDSGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS*
Ga0182041_113359202	3300016294	Soil	GLPRLGEAAGALADDAGSAMTRHDLEAWLDHHLEQPVLVEWHGLYGGEIREKISRTGVLRKESGAYLAGDAQIDLTDFEAADFENDGVLVELGKENVELYIAPSQLA
Ga0187776_109643561	3300017966	Tropical Peatland	ALVDDAASAMTRHDLEAWLDHHLEQPVLVEWHSLYGGEVTDKISRTGVLRKEGGEYLAGDAHIDLADFETADFENDGVVVELSEENVELYIALR
Ga0187788_100517021	3300018032	Tropical Peatland	MTRHDLEAWLDHHLEQPVLVEWHSLYGGEVTDKISRTGVLRKEGGEYLAGDAHIDLADFETADFENDGVVVELSEENVELYIALR
Ga0187773_106338641	3300018064	Tropical Peatland	VTRHDLEAWLDHHLDQPVLVEWHGLYGGEVAEKISRTGVLRKERGEYLADDAPIDLTDFEAADFAGEGVLVELGKENVELYIALS
Ga0184611_13194071	3300018067	Groundwater Sediment	MLLSPMTRHDFEAWLDHHLDQAVFVEWRELDGGLVTDKTSMTGALRKDGEGEYHAGEAHIDLGDFEVADFGGDGVIVELAQESAELYIAVS
Ga0184635_103430441	3300018072	Groundwater Sediment	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEVADFGGDGVIVELAQENAELYIAVS
Ga0184624_101187991	3300018073	Groundwater Sediment	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS
Ga0173481_100284942	3300019356	Soil	VALASNASCPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDTISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQESAELYIAVS
Ga0173481_101941903	3300019356	Soil	MLYSRPTMTRHDFEAWLDHHLDQPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVVVELLREDAELYIAVS
Ga0222624_14965182	3300021951	Groundwater Sediment	DHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS
Ga0222622_104373791	3300022756	Groundwater Sediment	MLLPPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQENAELYIAVS
Ga0207642_108954561	3300025899	Miscanthus Rhizosphere	MTRHDFEAWLEHHLDQSVFGEWRDLDCGLVTDTTSTTGVLRKNGGEYLAGDAHIDLTDFEAADFGNDGVIVEVLREDAELYIAVS
Ga0207704_115647611	3300025938	Miscanthus Rhizosphere	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALCKDGEGEYHAGEAHIDLGDFEVADFGGDGVIVELAQENAELYIVVS
Ga0207668_104582183	3300025972	Switchgrass Rhizosphere	MLLSEMTRHDFEAWLDHHLDQAVLVEWRELNGGLVTDMTSMTGALRKDGEGEYHAGEAHIDLADFEAADFGNDGVIVELLREDA
Ga0247822_118595432	3300028592	Soil	MMLYSRPTMTRHDFEAWLDHHLDQPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS
Ga0307503_100071082	3300028802	Soil	MTRHDFEAWLDHHLEQSVLVEWRDLDGGLVTDTTSTTGVLRKDGGEYVAGEAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS
Ga0247827_101571362	3300028889	Soil	MTRHDFEAWLDHHLDQSVLVEWRTLSDGLVTDKTSTTGVLRKDGGDTHIDLTDFDAADFGGEGVVVELLRESAELYIAVS
Ga0247827_106934151	3300028889	Soil	MMLYSRPTMTRHDFEAWLDHLLDQPVVVEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVIVELLREDAELYIAVS
Ga0247827_112967161	3300028889	Soil	MLLSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALHKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIVVS
Ga0307498_100589282	3300031170	Soil	AWLEHHLDQSVLVEWRTLSDGLVTDKTSTTGVLRKDGGDEYHAGDAHIDLTDFEAADFGGEGVVVELLRESAELYIAVS
Ga0307497_104024081	3300031226	Soil	MTRHDFEAWLDHHLDQPVLVEWRTLSGGMVTDATSTTGALCKDGGGEYHAGDAHIDLTDFEAADFGGDGVIVELLRESAELYIAVS
Ga0318516_105665152	3300031543	Soil	MTRHDFEAWLDHHLDQSVLVEWRTLSRGEVTDQTSTTGALRKDGDGEYHAGDAHIDLRDFEVADFGGDGVIVELAREHAELYIAVNQDAHHGDFVEAAPAALDLDD
Ga0310907_108849251	3300031847	Soil	MLPSPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS
Ga0310893_102332552	3300031892	Soil	MTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGALRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS
Ga0306923_121194712	3300031910	Soil	MTRHDFEAWLDHHLDQSVLVEWRTLSRGEVTDQTSTTGALRKDGDGEYHAGDAHIDLRDFEVADFGGDGVIVELAREHAELYIAVNQDAHHGDF
Ga0310885_105970582	3300031943	Soil	MLLFPMTRHDFEAWLDHHLDQAVLVEWRELDGGLVTDKISMTGSLRKDGEGEYHAGDAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVR
Ga0310902_109345021	3300032012	Soil	TRHDFEAWLDHHLDQAVLVEWRELDGGLITDKISMTGALRKDGEGEYHAGEAHIALGDFEAADFGGDGVIVELAQEKAELYIAVS
Ga0318525_104610392	3300032089	Soil	MTRHDLEAWLDHHLEQPVLVEWHGLYGGEIREKISRTGVLRKESGAYLAGDAQIDLTDFEAADFENDGVLVELGKENVELYIAPSQLA
Ga0310895_105323452	3300032122	Soil	MTRHDFEAWLDHHLDQAVLVERRELDGGLVTDKISMTGSLRKDGEGEYHAGEAHIDLGDFEAADFGGDGVIVELAQEKAELYIAVS
Ga0247829_100473142	3300033550	Soil	MTRHDFEAWLDHHLDQSVLVEWRTLSDGLVTDKTSTTGVLRKDGGDQYHAGDTHIDLTDFDAADFGGEGVVVELLRESAELYIAVS
Ga0247830_116036111	3300033551	Soil	MLYSRPTMTRHDFEAWLDHHLDQPVVFEWRDLDGGLVTDTTSTSGVLRKDGGEYLAGDAHIDLTDFEAADFGNDGVVVELLREDAELYIAVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F104059

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences