Metagenome Family F103929

Basic Information
Family ID	F103929
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	44 residues
Representative Sequence	MPQEVSISYQAVKSKVYKLIDALVEGSKTESEVQESMRRWWQLI
Number of Associated Samples	94
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	25.74 %
% of genes from short scaffolds (< 2000 bps)	23.76 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Unclassified (75.248 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (28.713 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.495 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.06% β-sheet: 0.00% Coil/Unstructured: 56.94%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00255	GSHPx	28.71
PF02517	Rce1-like	3.96
PF08241	Methyltransf_11	0.99
PF02646	RmuC	0.99
PF00120	Gln-synt_C	0.99
PF13437	HlyD_3	0.99
PF14437	MafB19-deam	0.99
PF13524	Glyco_trans_1_2	0.99
PF01425	Amidase	0.99
PF04542	Sigma70_r2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	28.71
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	3.96
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	3.96
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.99
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.99
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.99
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.99
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.99
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.99

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
All Organisms	root	All Organisms	24.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
cellular organisms	root	All Organisms → cellular organisms	24.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.91 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005175\|Ga0066673_10224970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300005180\|Ga0066685_11051840	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300005446\|Ga0066686_10312485	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300005566\|Ga0066693_10447210	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300006800\|Ga0066660_10972541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300009177\|Ga0105248_12601068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300010376\|Ga0126381_100894845	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300010376\|Ga0126381_103667162	Not Available	601	Open in IMG/M
3300012198\|Ga0137364_10245177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1323	Open in IMG/M
3300012285\|Ga0137370_10413989	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300017972\|Ga0187781_10188870	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300020579\|Ga0210407_10952888	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021560\|Ga0126371_12829795	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300025933\|Ga0207706_11094549	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300025940\|Ga0207691_10230577	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300025941\|Ga0207711_11954481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300025986\|Ga0207658_11941584	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300026309\|Ga0209055_1114141	All Organisms → cellular organisms → Bacteria → Acidobacteria	1045	Open in IMG/M
3300027660\|Ga0209736_1014038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2532	Open in IMG/M
3300027829\|Ga0209773_10137371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1016	Open in IMG/M
3300027869\|Ga0209579_10170930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300031720\|Ga0307469_10036988	All Organisms → cellular organisms → Bacteria	2916	Open in IMG/M
3300031720\|Ga0307469_10930610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300031720\|Ga0307469_11091299	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300033158\|Ga0335077_12098514	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300033808\|Ga0314867_094626	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.12%
Host-Associated	Host-Associated	11.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.17%
Plants	Host-Associated → Plants	11.88%
Aquatic	Environmental → Aquatic	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.89%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Sediment	Environmental → Aquatic → Sediment	1.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.38%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033808	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_00306060	2199352025	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTVEVQESIRRWWKLIHPSD
Ga0062594_1013294491	3300005093	Soil	MPQEVSISYQAVKSKVYKLIDAMVEGEKSPAEIQESMHRWWALVHPAD
Ga0066677_107812902	3300005171	Soil	MNQEISISYRAVKSKIYKLIDALVEGEKDEVEVQESIQRW
Ga0066680_109100021	3300005174	Soil	MGQEVSISLQAVKTKVYKLIDALIEGAKTETEVQESIRRWWKLIHPA
Ga0066673_102249701	3300005175	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADRPVAEKYL
Ga0066679_102219283	3300005176	Soil	MNCGKGRRMNQEISISYRAVKSKIYKLIDALVEGEKDEAEV
Ga0066685_110518401	3300005180	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADRPVAEK
Ga0070690_1006507231	3300005330	Switchgrass Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMAEGDKNSVEVQESIRRWWKLIHPSDRAV
Ga0070674_1011502831	3300005356	Miscanthus Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSLEVQESIRRWWKLIHPSDRAVAQ
Ga0066686_103124852	3300005446	Soil	MGQEVSVSLQAVKTKVYKLIDALIEGAKTEAEVQESIRRWW
Ga0070706_1004410451	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADR
Ga0070699_1012837841	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGQEVSVSLQAVKTKVYKLIDALIEGAKTEAEVQESIRRWWKL
Ga0070731_108803012	3300005538	Surface Soil	MPQEISVSYQAVKSKVYKLIDAAVEGEKTDQQIRESLARWWKL
Ga0070665_1017204612	3300005548	Switchgrass Rhizosphere	MGQEVSISYQAVKSRVYRLIDALVEGAKTEEDVQESVR
Ga0066699_108843242	3300005561	Soil	MGQEVSISLQAVKTKVYKLIDALIEGAKTETEVQESIR
Ga0066693_104472101	3300005566	Soil	MPQEISISYQAVKSKVYRLIDAVVEGSKTESEVRESMRRWWMLIHPADRPVAEK
Ga0066702_103440301	3300005575	Soil	MNQEISISYRAVKSKIYKLIDALEEGEKDEAEVQESIRRWWK
Ga0066651_101491733	3300006031	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWW
Ga0066696_108576711	3300006032	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWML
Ga0066656_102532894	3300006034	Soil	MNQEISISYRAVKSKIYKLIDALVEGEKNEAEVQESIQRW
Ga0066656_105533221	3300006034	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPAD
Ga0070715_109836301	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWKLIHP
Ga0070716_1001920913	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGQEISVSYQAVKSKVYKLIDALVEGSKTPAEVQLSIQRWW*
Ga0070765_1021212592	3300006176	Soil	MPQEVSISYQAVKSKVYKLIDALVEGSKTESEVQESMRRWWQLI
Ga0066665_108680902	3300006796	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLI
Ga0066660_109725411	3300006800	Soil	MNQEISISYRAVKSKIYKLIDALVEGEKNEAEVQESIQRWWKMVRPDDRAVAEKYL
Ga0066660_112104342	3300006800	Soil	MNQEISISYRAVKSKIYKLIDALVEGEKDEAEVQESIQRWWKMVRPD
Ga0079221_100978421	3300006804	Agricultural Soil	MNQEISISYRAVKSKIYKLIDALVEGEKNEAEVQESIRRWWKMVR
Ga0073928_101099751	3300006893	Iron-Sulfur Acid Spring	MNQEISISYRAVKSKIYKLIDALVEGEKDEAEVRESIQRWWKMV
Ga0075424_1005812181	3300006904	Populus Rhizosphere	MPQEVSISYQAVKSKVYKLIDAMVEGEKSPVEVQESMQRWW
Ga0099829_101619661	3300009038	Vadose Zone Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRE
Ga0099828_105185461	3300009089	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKTTIEVQESIRRWWNLIHPS
Ga0099827_104554081	3300009090	Vadose Zone Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTETEVRESMRRWWM
Ga0099792_110229402	3300009143	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWKLIH
Ga0105248_126010682	3300009177	Switchgrass Rhizosphere	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQEIQESMQRWWKLVHP
Ga0105237_125137222	3300009545	Corn Rhizosphere	MGQEVSISYQAVKSRVYRLIDALVEGAKTEEDVQESVRRWWKL
Ga0105249_110172422	3300009553	Switchgrass Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTVEVQESIRRWWKLIHPS
Ga0116217_106988132	3300009700	Peatlands Soil	MGQEVSISYQAVKSKVYKLIDALVEDMKTEGDVQESMKR
Ga0126380_115674101	3300010043	Tropical Forest Soil	MPQEVSISYQAVKSKVYKLIDAMVEGEKSPLEVQESMQRWW
Ga0126381_1008948452	3300010376	Tropical Forest Soil	MGQDVSVSYQAVKSRVYRLIDSLAEDGKTTNDVKDSLK
Ga0126381_1036671622	3300010376	Tropical Forest Soil	MAQSVSVSYQAVKSRVYRLIDSLAEDKKTTNDVKDS
Ga0134126_118301241	3300010396	Terrestrial Soil	MNQEISISYRAVKSKIYKLIDALVEGEKSEAEVQESIRRWWKMVR
Ga0134121_109332611	3300010401	Terrestrial Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSAEVQESIRR
Ga0137388_113245741	3300012189	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLIDAMVEGEKTEAEVQESMRRWWALIHPSDRPV
Ga0137364_102451772	3300012198	Vadose Zone Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADRPVA
Ga0137383_112285402	3300012199	Vadose Zone Soil	MGQEVSISLQAVKTKVYKLIDALIEGAKTEAEVQESIRRWWKLI
Ga0137381_113511481	3300012207	Vadose Zone Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPA
Ga0137376_107887882	3300012208	Vadose Zone Soil	MPQEISISYQAVKSKVYKLVDAMVEGEKTPMEVQESMRRWWS
Ga0150985_1156926151	3300012212	Avena Fatua Rhizosphere	MAQEISISQQAVKGRIYKLIDAMVEGTKTEFEIQESIIRWWGL
Ga0137370_104139891	3300012285	Vadose Zone Soil	MGQEISVSLQAVKTKVYKLIDALIEGAKTEAEVQESIRRWW
Ga0137407_104918022	3300012930	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQE
Ga0137407_112422801	3300012930	Vadose Zone Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIH
Ga0164309_101093713	3300012984	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSVEVQESI
Ga0164305_116185921	3300012989	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSVEVQESIRRWWKLIHPSDRAVA
Ga0137412_109738891	3300015242	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRHWWKL
Ga0134083_103786311	3300017659	Grasslands Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADRP
Ga0187779_106987681	3300017959	Tropical Peatland	MSQEISVSYQAIKSKVYKLIDAAVEGEKTDAQIQESMQRWWKLVHPADRI
Ga0187783_102519171	3300017970	Tropical Peatland	MPQEISVSYQAIKSKVYKLIDAAVEGEKSEQQIRESMQR
Ga0187781_101888703	3300017972	Tropical Peatland	MSQEISVSYQAIKSKVYKLIDAAVEGEKTEAQVQESLERWWKLVHPSD
Ga0187777_101595851	3300017974	Tropical Peatland	MPQEISVSYQAVKSKVYKLIDAAVEGEKSEQQIRESMQRWWKLIHPADRVV
Ga0184605_101966272	3300018027	Groundwater Sediment	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTAEVQESIRRWWSLIH
Ga0187788_104383052	3300018032	Tropical Peatland	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTLEVQE
Ga0187859_106278652	3300018047	Peatland	MGQEVSVSYQAVKSKVYKLIDAMVEDMKNQGDVQESM
Ga0187766_113366991	3300018058	Tropical Peatland	MGQEISISYQAVKSKVYRLIDALVEGSKTEIEVQES
Ga0193747_10682502	3300019885	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSAEVQESIRRWWSLI
Ga0193732_10293252	3300020012	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTIEVQESIRR
Ga0210407_109528883	3300020579	Soil	VPQEISVSYRAIKSRIYRLIDAMVVGEKTGAEVQESIRRWWILVHPADRPIA
Ga0210406_109148852	3300021168	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWW
Ga0210410_103677553	3300021479	Soil	MPQEVSISYQAVKSKVYKLIDALVEGSKTESEVQESM
Ga0126371_128297952	3300021560	Tropical Forest Soil	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQEIQESMQRWW
Ga0247799_10549712	3300023072	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSLEVQE
Ga0207680_109128112	3300025903	Switchgrass Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSLEVQES
Ga0207664_118993222	3300025929	Agricultural Soil	MNQEISISYRAVKSKIYKLIDALVEGEKNEAEVQESIRRWWKMVRPDDRAVAE
Ga0207706_110945491	3300025933	Corn Rhizosphere	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQEVQESMQRWWKLVHP
Ga0207691_102305772	3300025940	Miscanthus Rhizosphere	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQEVQESMQRWWKLV
Ga0207711_119544812	3300025941	Switchgrass Rhizosphere	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQEIKESMQRW
Ga0207658_119415841	3300025986	Switchgrass Rhizosphere	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWKLIHPSDRAVAQKYLLMV
Ga0209055_11141411	3300026309	Soil	MGQEVSISLQAVKTKVYKLIDALIEGAKTETEVQESIRRWWKLIHPADRAVAQ
Ga0209470_12616532	3300026324	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRES
Ga0257180_10315682	3300026354	Soil	MPQEVSISYQAVKSKVYKLVDAVVEGDKNTIEVQESIRRWWKLIHPSD
Ga0209806_10941632	3300026529	Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWMLIHPADRPV
Ga0209331_11331131	3300027603	Forest Soil	MPQEVSISYQAVKSKVYKLVDAMVEGEKSPTEVQESIRRWWSLIHPC
Ga0209736_10140381	3300027660	Forest Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWKLIHPSDRAVAQ
Ga0209073_104317682	3300027765	Agricultural Soil	MNQEISISYRAVKSKIYKLIDALVEGEKNEAEVQESIRRWWKMVRPDDRA
Ga0209773_101373711	3300027829	Bog Forest Soil	MSQEISVSYQAVKSKVHKLIDAAVEGEKTDAQIRNS
Ga0209701_104142761	3300027862	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNQVEVQESIRRWWKLIHPSD
Ga0209579_101709301	3300027869	Surface Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKSPLEVQESIRRWWKLIHPSDRAVAQKY
Ga0209488_101332633	3300027903	Vadose Zone Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRW
Ga0209583_102796242	3300027910	Watersheds	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTIEVQESIRRWWKLIHPSDRAV
Ga0209526_101672631	3300028047	Forest Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNTIEVQE
Ga0170818_1066217932	3300031474	Forest Soil	MGQEISVSYQAVKSKVYKLIDALVEDAKTEGDVQESVK
Ga0307469_100369884	3300031720	Hardwood Forest Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWKLIHPSDRAV
Ga0307469_109306101	3300031720	Hardwood Forest Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNPVEVQESIRRWWNLIHPSDRAVAQKYL
Ga0307469_110912992	3300031720	Hardwood Forest Soil	MGQEISVSLQAVKTKVYKLIDALIEGAKTEAEVQESVRRWWKL
Ga0307475_106347762	3300031754	Hardwood Forest Soil	MGQEVSISYQAVKSKVYKLIDALVEDAKTRGDVQDSVKRWWKLVHPADR
Ga0318533_114311931	3300032059	Soil	MPQEVSVSYQAVKSKVYKLIDAAVEGEKSEQQIRESMQRWWK
Ga0307471_1011454593	3300032180	Hardwood Forest Soil	MPQEISISYQAVKSKVYRLIDAMVEGSKTESEVRESMRRWWM
Ga0307471_1043141281	3300032180	Hardwood Forest Soil	MGQEVSISLQAVKTKVFKLIDALIEGAKTEAEVQESIRRWWKLIHPADRAV
Ga0335077_120985142	3300033158	Soil	MGQEVSVSYQAVKSRVYRLIDSLVEGAKTEQDIQDSMK
Ga0316624_115498391	3300033486	Soil	MPQEVSISYQAVKSKVYKLVDAMVEGDKNSLEVQESIRRWWKLIHPSDR
Ga0314867_094626_3_125	3300033808	Peatland	MSQEISVSYQAIKSKVYRLIDAAVEGEKTEAQIQQSMQRWW

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103929

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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