Metagenome / Metatranscriptome Family F103864

Basic Information
Family ID	F103864
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	41 residues
Representative Sequence	LAGARAAGATEDEVREAISFAIRANAAKTHADILKVYEAP
Number of Associated Samples	92
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.96 %
% of genes near scaffold ends (potentially truncated)	93.07 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Most Common Taxonomy
Group	Bacteria (94.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.852 % of family members)
Environment Ontology (ENVO)	Unclassified (33.663 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.663 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.53% β-sheet: 0.00% Coil/Unstructured: 51.47%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF05175	MTS	20.79
PF04794	YdjC	14.85
PF00291	PALP	3.96
PF06325	PrmA	2.97
PF00480	ROK	2.97
PF13659	Obsolete Pfam Family	2.97
PF00144	Beta-lactamase	2.97
PF01799	Fer2_2	1.98
PF00398	RrnaAD	0.99
PF08240	ADH_N	0.99
PF02475	Met_10	0.99
PF00085	Thioredoxin	0.99
PF00578	AhpC-TSA	0.99
PF12840	HTH_20	0.99
PF02738	MoCoBD_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	14.85
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	5.94
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	3.96
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	2.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.97
COG2367	Beta-lactamase class A	Defense mechanisms [V]	2.97
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	2.97
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	2.97
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.99
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.99
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.99
COG2520	tRNA G37 N-methylase Trm5	Translation, ribosomal structure and biogenesis [J]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	79.21 %
Unclassified	root	N/A	5.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	79.21 %
Unclassified	root	N/A	5.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	79.21 %
Unclassified	root	N/A	5.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	7.92 %
Unclassified	root	N/A	5.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.99 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.99 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.92 %
Unclassified	root	N/A	5.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.99 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.99 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.92 %
Unclassified	root	N/A	5.94 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.99 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.99 %
Cupriavidus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.92 %
Unclassified	root	N/A	5.94 %
Microbacterium mangrovi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium mangrovi	0.99 %
Actinoplanes friuliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes friuliensis	0.99 %
Cupriavidus taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002120\|C687J26616_10171289	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	676	Open in IMG/M
3300002122\|C687J26623_10045231	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300002123\|C687J26634_10018237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2814	Open in IMG/M
3300004156\|Ga0062589_102251586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	559	Open in IMG/M
3300004268\|Ga0066398_10123634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300004643\|Ga0062591_101927886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	607	Open in IMG/M
3300004781\|Ga0062379_10133698	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	609	Open in IMG/M
3300005174\|Ga0066680_10566015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	713	Open in IMG/M
3300005174\|Ga0066680_10851107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus taiwanensis	545	Open in IMG/M
3300005186\|Ga0066676_10020491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3449	Open in IMG/M
3300005186\|Ga0066676_10376315	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	954	Open in IMG/M
3300005331\|Ga0070670_102098455	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	521	Open in IMG/M
3300005332\|Ga0066388_104032607	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005446\|Ga0066686_11068191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300005446\|Ga0066686_11068192	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300005467\|Ga0070706_100344789	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1389	Open in IMG/M
3300005468\|Ga0070707_100306474	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1543	Open in IMG/M
3300005547\|Ga0070693_100891301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	666	Open in IMG/M
3300005574\|Ga0066694_10520913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	554	Open in IMG/M
3300006049\|Ga0075417_10405989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	675	Open in IMG/M
3300006169\|Ga0082029_1202422	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	587	Open in IMG/M
3300006806\|Ga0079220_11282316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	612	Open in IMG/M
3300006914\|Ga0075436_100717778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	741	Open in IMG/M
3300006918\|Ga0079216_10224770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes friuliensis	1050	Open in IMG/M
3300006969\|Ga0075419_10187102	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1366	Open in IMG/M
3300007076\|Ga0075435_101192960	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	666	Open in IMG/M
3300007258\|Ga0099793_10244365	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300009038\|Ga0099829_10625554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	895	Open in IMG/M
3300009090\|Ga0099827_10430824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1129	Open in IMG/M
3300009094\|Ga0111539_10840524	Not Available	1068	Open in IMG/M
3300009100\|Ga0075418_12096303	Not Available	616	Open in IMG/M
3300009147\|Ga0114129_11482820	Not Available	834	Open in IMG/M
3300009148\|Ga0105243_11889875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	630	Open in IMG/M
3300009162\|Ga0075423_10049397	All Organisms → cellular organisms → Bacteria	4329	Open in IMG/M
3300009777\|Ga0105164_10172693	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1102	Open in IMG/M
3300009816\|Ga0105076_1114715	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	532	Open in IMG/M
3300010303\|Ga0134082_10099028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1152	Open in IMG/M
3300010321\|Ga0134067_10496363	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300010335\|Ga0134063_10008973	All Organisms → cellular organisms → Bacteria	3855	Open in IMG/M
3300010337\|Ga0134062_10108747	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1197	Open in IMG/M
3300010359\|Ga0126376_13228213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	504	Open in IMG/M
3300010360\|Ga0126372_12371023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	581	Open in IMG/M
3300010361\|Ga0126378_13437696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium mangrovi	502	Open in IMG/M
3300010362\|Ga0126377_10919720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	938	Open in IMG/M
3300010391\|Ga0136847_10118771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	623	Open in IMG/M
3300010399\|Ga0134127_12899860	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300011438\|Ga0137451_1245142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	565	Open in IMG/M
3300012199\|Ga0137383_10774567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	700	Open in IMG/M
3300012200\|Ga0137382_10956213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	616	Open in IMG/M
3300012203\|Ga0137399_10900927	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300012207\|Ga0137381_11337380	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	609	Open in IMG/M
3300012350\|Ga0137372_10886333	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	634	Open in IMG/M
3300012363\|Ga0137390_10550052	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300012401\|Ga0134055_1281983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	743	Open in IMG/M
3300012685\|Ga0137397_10269680	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1268	Open in IMG/M
3300012922\|Ga0137394_10763467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	812	Open in IMG/M
3300012922\|Ga0137394_10983070	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	702	Open in IMG/M
3300012923\|Ga0137359_10923785	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300014262\|Ga0075301_1180887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	507	Open in IMG/M
3300014271\|Ga0075326_1239922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	554	Open in IMG/M
3300014272\|Ga0075327_1021289	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1945	Open in IMG/M
3300018063\|Ga0184637_10101367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1773	Open in IMG/M
3300018082\|Ga0184639_10410969	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300018466\|Ga0190268_10593514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	782	Open in IMG/M
3300018482\|Ga0066669_12395260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	506	Open in IMG/M
3300019789\|Ga0137408_1003420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1416	Open in IMG/M
3300021168\|Ga0210406_10792266	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	722	Open in IMG/M
3300025146\|Ga0209322_10369194	Not Available	562	Open in IMG/M
3300025164\|Ga0209521_10682412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300025167\|Ga0209642_10351425	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	831	Open in IMG/M
3300025173\|Ga0209824_10290541	Not Available	563	Open in IMG/M
3300025289\|Ga0209002_10277037	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	997	Open in IMG/M
3300025309\|Ga0209212_1182740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1131	Open in IMG/M
3300025311\|Ga0209343_10398381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	903	Open in IMG/M
3300025311\|Ga0209343_10485531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	778	Open in IMG/M
3300025923\|Ga0207681_11566922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	552	Open in IMG/M
3300026018\|Ga0208418_1036212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M
3300026312\|Ga0209153_1063566	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1330	Open in IMG/M
3300026312\|Ga0209153_1084170	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300026331\|Ga0209267_1074482	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1478	Open in IMG/M
3300026331\|Ga0209267_1108346	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300026334\|Ga0209377_1152942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	869	Open in IMG/M
3300026529\|Ga0209806_1105402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1190	Open in IMG/M
3300027013\|Ga0209884_1038954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	513	Open in IMG/M
3300027765\|Ga0209073_10225021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	721	Open in IMG/M
3300027873\|Ga0209814_10518159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M
3300027880\|Ga0209481_10431792	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	677	Open in IMG/M
3300027882\|Ga0209590_10063520	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2102	Open in IMG/M
3300030619\|Ga0268386_10987839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	519	Open in IMG/M
3300031548\|Ga0307408_101468679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	644	Open in IMG/M
3300031720\|Ga0307469_11213135	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	713	Open in IMG/M
3300031731\|Ga0307405_10945543	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	732	Open in IMG/M
3300031740\|Ga0307468_100159949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1462	Open in IMG/M
3300031911\|Ga0307412_10287838	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1293	Open in IMG/M
3300031911\|Ga0307412_10464412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1046	Open in IMG/M
3300031949\|Ga0214473_10538912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1297	Open in IMG/M
3300031965\|Ga0326597_10638245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1132	Open in IMG/M
3300032180\|Ga0307471_100339795	Not Available	1607	Open in IMG/M
3300032205\|Ga0307472_100064440	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300032205\|Ga0307472_100082705	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2142	Open in IMG/M
3300034178\|Ga0364934_0224527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.17%
Host-Associated	Host-Associated	16.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.27%
Plants	Host-Associated → Plants	16.83%
Aquatic	Environmental → Aquatic	9.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.83%
Freshwater	Environmental → Aquatic → Freshwater	6.93%
Sediment	Environmental → Aquatic → Sediment	2.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.85%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.98%
Sand	Environmental → Terrestrial → Soil → Sand	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.99%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.99%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.99%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002123	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300025146	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025309	Soil microbial communities from Rifle, Colorado, USA - Groundwater C2	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026018	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103864

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J26616_101712891	3300002120	Soil	GGQHALSEADLAGARAAGATEDEVRETISFAIRANAAKTHADILKVWDGDR*
C687J26623_100452313	3300002122	Soil	VTWHARAAGATEDELREAISFAIRANAAKTHADILKVWSD*
C687J26634_100182371	3300002123	Soil	LSEADLAGARAAGATEDEVREAISFAIRANAAKTHADILKVWDGDR*
Ga0062589_1022515861	3300004156	Soil	LSERDLAGARQSGATEDEVREAISFAIRANAAKTHADILKVYEEPGRQALA*
Ga0066398_101236342	3300004268	Tropical Forest Soil	LSERDLAGARQSGANEDEVREAISFAIRANAAKTHADILKVYEER*
Ga0062591_1019278863	3300004643	Soil	HALSERDLAGARQSGATEDEVREAISFAIRANAAKTHADILKVYEESGR*
Ga0062379_101336981	3300004781	Wetland Sediment	RDLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGA*
Ga0066680_105660153	3300005174	Soil	KRDLAGARASGASEDEVREAISFAIRANAAKAHADILKVYTDSVS*
Ga0066680_108511072	3300005174	Soil	RDLAGARNSGATEDEVREAVSFAIRANAAKAHADILSVWTERAG*
Ga0066676_100204913	3300005186	Soil	LAGARASGASEDEVREAISFAIRANAAKAHADILKVWTDGGG*
Ga0066676_103763151	3300005186	Soil	EHALAKRDLAGARAAGASEDEVREAISFAIRANAAKTHADILSVYEPGS*
Ga0070670_1020984552	3300005331	Switchgrass Rhizosphere	KRDLAGARASGATEDEVREAISFAIRANAAKTHADILKVYTDGSGG*
Ga0066388_1040326072	3300005332	Tropical Forest Soil	QHPLSERDLAGARNSGATEDEVREAISFAIRANAAKAHADILSVWSERAG*
Ga0066686_110681912	3300005446	Soil	LSERDLAGARAAGATEDEVREAISFAIRANAAKTHADILTVYEPR*
Ga0066686_110681922	3300005446	Soil	LSERDLAGARAAGATEDEVREAISFAIRANAAKTHADILKVYEPR*
Ga0070706_1003447891	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	KRDLAGARAAGATEDEVREAISFAIHANAAKTHADILKVYEPR*
Ga0070707_1003064744	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AGARAAGASEEEVREAISFAIRANAAKTHADILKVYEPGS*
Ga0070693_1008913012	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VTWHARAAGATEDELREAISFAIRANAAKTHADILKVWQD*
Ga0066694_105209131	3300005574	Soil	APRDLAGARAAGATEDEVREAISFAIRANAAKTHADILKVWKDGGR*
Ga0075417_104059893	3300006049	Populus Rhizosphere	KRDLAGARQSGASEDEVREAISFAIRANAAKTHADILKVYEER*
Ga0082029_12024222	3300006169	Termite Nest	MRDLAGARAAGATEDEVREAISFAIRANAAKTHADILKVYEPPA*
Ga0079220_112823161	3300006806	Agricultural Soil	ARAAGATEDELREAISFAIRANAAKTHADILKVWQD*
Ga0075436_1007177783	3300006914	Populus Rhizosphere	ARAAGATEDEVREAISFAIRANAAKTHADILKVYSDGGG*
Ga0079216_102247703	3300006918	Agricultural Soil	LAGARAAGASEDEVREAISFAIRANAAKTHADILQVYTDGGR*
Ga0075419_101871021	3300006969	Populus Rhizosphere	KRDLAGARQSGASEDEVREAISFAIRANAAKAHADILKVYEAR*
Ga0075435_1011929601	3300007076	Populus Rhizosphere	ASGASEDEVREAISFAIRANAAKAHADILKVYTDGVS*
Ga0099793_102443652	3300007258	Vadose Zone Soil	LAGARQSGATEDELREAISFAIRANAAKTHADILKVWEER*
Ga0099829_106255541	3300009038	Vadose Zone Soil	RAAGATEDELREAISFAIRANAAKTHADILKVWQE*
Ga0099827_104308243	3300009090	Vadose Zone Soil	RSNGASEDEVREAISFAIRANAAKAHADILKVYTDG*
Ga0111539_108405242	3300009094	Populus Rhizosphere	DLAGARASGATEDEVREAISFAIRANAAKAHADILSVWTESG*
Ga0075418_120963032	3300009100	Populus Rhizosphere	AGARNSGASEDEVREAISFAIRANAAKAHADILSVWTERAG*
Ga0114129_114828202	3300009147	Populus Rhizosphere	RDLAGARASGATEDEVREAISFAIRANAAKAHADILSVWTES*
Ga0105243_118898753	3300009148	Miscanthus Rhizosphere	AGARAAGATEDELREAISFAIRANAAKTHADILKVWQE*
Ga0075423_100493977	3300009162	Populus Rhizosphere	MRDLAGARQNGASEDEVREAISFAIRANAAKAHADILKVYADGGS*
Ga0105164_101726931	3300009777	Wastewater	RDLAGARAAGATEEEIREAISFAIRANAAKVHADILKVWDGER*
Ga0105076_11147151	3300009816	Groundwater Sand	AKRDLAGARAAGATEDEVREAISFAIRANAAKAHADILEVWDGGR*
Ga0134082_100990284	3300010303	Grasslands Soil	LAGARASGASEDEVREAISFAIRANAAKAHADILKVYTDSVS*
Ga0134067_104963633	3300010321	Grasslands Soil	ASGATEDEVREAISFAIRANAAKTHADILTVWTDGGR*
Ga0134063_100089731	3300010335	Grasslands Soil	SGASEDELREAISFAIRANAAKTHADILKVWTDGGS*
Ga0134062_101087471	3300010337	Grasslands Soil	RASGASEDEVREAISFAIRANAAKAHADILKVWTDGGG*
Ga0126376_132282132	3300010359	Tropical Forest Soil	ARAVGATEDEVREAISFAIRANAAKTHADILKVYEPPA*
Ga0126372_123710232	3300010360	Tropical Forest Soil	AKRDLAGARNSGATEDEVREAISFAIRANAAKAHADILSVWTERAG*
Ga0126378_134376963	3300010361	Tropical Forest Soil	MQSGASEDEVREAISFAIRANAAKTHADILKVYEAR*
Ga0126377_109197201	3300010362	Tropical Forest Soil	KRDLAGARQSGATEDEVREAISFAIRANAAKAHADILKVYDER*
Ga0136847_101187711	3300010391	Freshwater Sediment	ASGATEDEVREAISFAIRANAAKAHADILSVWTEKKD*
Ga0134127_128998602	3300010399	Terrestrial Soil	WLMAPATEDEVREAMSFAIRANAAKAHADILSVWNERA*
Ga0137451_12451423	3300011438	Soil	AGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS*
Ga0137383_107745671	3300012199	Vadose Zone Soil	DLAGARASGASEDEVREAISFAIRANAAKAHADILKVYTDSVS*
Ga0137382_109562131	3300012200	Vadose Zone Soil	DLAGARASGASEDEVREAISFAIRANAAKAHADILKVWTDGGG*
Ga0137399_109009271	3300012203	Vadose Zone Soil	KRDLAGARQSGATEDELREAISFAIRANAAKTHADILKVWEER*
Ga0137381_113373801	3300012207	Vadose Zone Soil	ASGASEDELREAISFAIRANAAKTHADILKVWTDGGR*
Ga0137372_108863331	3300012350	Vadose Zone Soil	AAGASEEEVREAISFAIRANAAKTHADILKVYEPGS*
Ga0137390_105500521	3300012363	Vadose Zone Soil	KRDLAGARRAGATEDEVREAISFAIRANAAKAHADILAVYTA*
Ga0134055_12819833	3300012401	Grasslands Soil	ASGASEDEVREAISFAIRANAAKAHADILKVYTDSVS*
Ga0137397_102696801	3300012685	Vadose Zone Soil	GANEDEVREAISFAIRANAAKTHADILKVYEQES*
Ga0137394_107634673	3300012922	Vadose Zone Soil	GARQSGASEDEVREAISFAIRANAAKTHADILKVYEER*
Ga0137394_109830703	3300012922	Vadose Zone Soil	ARAAGASEDEVREAISFAIRANAAKTHADILTVYEPGS*
Ga0137359_109237851	3300012923	Vadose Zone Soil	GARQSGATEDELREAISFAIRANAAKTHADILKVWEER*
Ga0075301_11808872	3300014262	Natural And Restored Wetlands	DLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS*
Ga0075326_12399223	3300014271	Natural And Restored Wetlands	ARASGATEDEVREAISFAIRANAAKAHADILSVYTEPTG*
Ga0075327_10212894	3300014272	Natural And Restored Wetlands	ATEDEVREAISFAIRANAAKAHADILSVYTEPTG*
Ga0184637_101013674	3300018063	Groundwater Sediment	GARASGATEDEVREAISFAIRANAAKAHADILSVWTEKKD
Ga0184639_104109691	3300018082	Groundwater Sediment	DLAGARKSGASEDEVREAISFAIRANAAKAHADILKVYDG
Ga0190268_105935141	3300018466	Soil	KRDLAGARASGATEDEVREAISFAIRANAAKAHADILSVYTEPKG
Ga0066669_123952603	3300018482	Grasslands Soil	ASGASEDEVREAISFAIRANAAKAHADILKVYADGGR
Ga0137408_10034201	3300019789	Vadose Zone Soil	ARQSGATEDELREAISFAIRANAAKTHADILKVWNE
Ga0210406_107922661	3300021168	Soil	AKRDLAGARAAGATEDELREAISFAIRANAAKTHADILKVWQE
Ga0209322_103691943	3300025146	Soil	GARAAGATEDELREAISFAIRANAAKVHADILKVWDGER
Ga0209521_106824121	3300025164	Soil	GARSAGATEAEIREAISFAIRANAAKTHADILQVWDGDR
Ga0209642_103514253	3300025167	Soil	LAGARAAGATEDEVREAISFAIRANAAKTHADILKVYEAP
Ga0209824_102905412	3300025173	Wastewater	RDLAGARAAGATEEEIREAISFAIRANAAKVHADILKVWDGER
Ga0209002_102770373	3300025289	Soil	AAGATEDELREAISFAIRANAAKVHADILKVWDGER
Ga0209212_11827401	3300025309	Soil	LAGARASGASEDEVREAISFAIRANAAKTHADILKVYTDGGR
Ga0209343_103983811	3300025311	Groundwater	AAGASGDEVREAISFAIRANAAKTHADILKVYETGS
Ga0209343_104855313	3300025311	Groundwater	RDLAGARAAGATEDEVREAISFAIRANAAKTHADILKVYEAP
Ga0207681_115669223	3300025923	Switchgrass Rhizosphere	GGRASGASEDEVREAISFAIRANAAKAHADILSVYTEPKG
Ga0208418_10362123	3300026018	Natural And Restored Wetlands	AKRDLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS
Ga0209153_10635661	3300026312	Soil	KRDLAGARASGASEDEVREAISFAIRANAAKAHADILKVYADGGR
Ga0209153_10841703	3300026312	Soil	KRDLAGARQSGATEDELREAISFAIRANAAKTHADILKVWEER
Ga0209267_10744821	3300026331	Soil	AKRDLAGARASGASEDEVREAISFAIRANAAKAHADILKVYTDSVS
Ga0209267_11083461	3300026331	Soil	DLAGARRAGATEAEVREAISFAIRANAAKAHADILAVYTA
Ga0209377_11529423	3300026334	Soil	QSGASEDEVREAISFAIRANAAKTHADILKVYEER
Ga0209806_11054023	3300026529	Soil	AKRDLAGARQSGATEDELREAISFAIRANAAKTHADILKVWNE
Ga0209884_10389542	3300027013	Groundwater Sand	RDLAGARAAGASEDELREAISFAIRANAAKTHADILKVWQD
Ga0209073_102250211	3300027765	Agricultural Soil	GARAAGATEDELREAISFAIRANAAKTHADILKVWQD
Ga0209814_105181591	3300027873	Populus Rhizosphere	KRDLAGARQSGASEDEVREAISFAIRANAAKTHADILKVYEER
Ga0209481_104317921	3300027880	Populus Rhizosphere	ARASGATEDEVREAISFAIRANAAKAHADILSVYTEPKS
Ga0209590_100635205	3300027882	Vadose Zone Soil	AKRDLAGARASGASEDELREAISFAIRANAAKTHADILKVWTDGGS
Ga0268386_109878393	3300030619	Soil	GARASGATEDEVREAISFAIRANAAKVHADILSVYTEPKG
Ga0307408_1014686791	3300031548	Rhizosphere	GARAAGATEDEVKEAISFAIRANAAKTHADILKVWKAP
Ga0307469_112131351	3300031720	Hardwood Forest Soil	AGARNSGATEDEVREAVSFAIRANAAKAHADILSVWTERAG
Ga0307405_109455433	3300031731	Rhizosphere	GATEDEVREAISFAIRANAAKTHADILKVYEESGR
Ga0307468_1001599491	3300031740	Hardwood Forest Soil	AGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPES
Ga0307412_102878384	3300031911	Rhizosphere	AKRDLAGARQSGATEDEVREAISFAIRANAAKTHADILKVYEEAGR
Ga0307412_104644123	3300031911	Rhizosphere	PRDLAGARAAGATEDEVREAISFAIRANAAKTHADILKIWKE
Ga0214473_105389121	3300031949	Soil	ARAAGATEDEVREAISFAIRANAAKAHADILQVYTAPGK
Ga0326597_106382451	3300031965	Soil	ATRDLAGARAAGASEQELREAISFAIRANAAKVHADILKVWDGEK
Ga0307471_1003397951	3300032180	Hardwood Forest Soil	KRDLAGARASGATEDEVREAISFAIRANAAKAHADILSVWTEGG
Ga0307472_1000644401	3300032205	Hardwood Forest Soil	RNSGATEDEVREAVSFAIRANAAKAHADILSVWTERAG
Ga0307472_1000827051	3300032205	Hardwood Forest Soil	AGARAAGATEDELREAISFAIRANAAKTHADILKVWQE
Ga0364934_0224527_2_133	3300034178	Sediment	RDLAGARAAGASEDEVREAISFAIRANAAKTHADILKVYEPGS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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