Metagenome / Metatranscriptome Family F103814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	54 residues
Representative Sequence	MKRLISVVVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.26 %
% of genes near scaffold ends (potentially truncated)	27.72 %
% of genes from short scaffolds (< 2000 bps)	86.14 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.465 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (18.812 % of family members)
Environment Ontology (ENVO)	Unclassified (35.644 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.267 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.83% β-sheet: 7.32% Coil/Unstructured: 65.85%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07221	GlcNAc_2-epim	5.94
PF00006	ATP-synt_ab	4.95
PF03663	Glyco_hydro_76	2.97
PF12631	MnmE_helical	1.98
PF08281	Sigma70_r4_2	1.98
PF07498	Rho_N	1.98
PF07497	Rho_RNA_bind	1.98
PF07043	DUF1328	0.99
PF11752	DUF3309	0.99
PF02545	Maf	0.99
PF01208	URO-D	0.99
PF14742	GDE_N_bis	0.99
PF03653	UPF0093	0.99
PF00156	Pribosyltran	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2942	Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family	Carbohydrate transport and metabolism [G]	5.94
COG4833	Predicted alpha-1,6-mannanase, GH76 family	Carbohydrate transport and metabolism [G]	2.97
COG1158	Transcription termination factor Rho	Transcription [K]	1.98
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.99
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.99
COG1981	Protoporphyrinogen oxidase HemJ (unrelated to HemG or HemY)	Coenzyme transport and metabolism [H]	0.99
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.47 %
Unclassified	root	N/A	46.53 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.48 %
Unclassified	root	N/A	46.53 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.57 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	36.63 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	15.84 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	8.91 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.98 %
Methyloligella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.53 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8.91 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	0.99 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16726323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	2157	Open in IMG/M
2228664021\|ICCgaii200_c0961408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
2228664022\|INPgaii200_c0917882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	736	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101616175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2501	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101616744	Not Available	1397	Open in IMG/M
3300000550\|F24TB_10351955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1384	Open in IMG/M
3300000955\|JGI1027J12803_104154109	Not Available	1549	Open in IMG/M
3300000956\|JGI10216J12902_104888153	Not Available	508	Open in IMG/M
3300002155\|JGI24033J26618_1052661	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300004479\|Ga0062595_100457058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	941	Open in IMG/M
3300004480\|Ga0062592_101598790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300004633\|Ga0066395_10196425	Not Available	1053	Open in IMG/M
3300004633\|Ga0066395_10426896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	752	Open in IMG/M
3300004643\|Ga0062591_102612399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300005093\|Ga0062594_100028237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2520	Open in IMG/M
3300005294\|Ga0065705_10166397	Not Available	1727	Open in IMG/M
3300005329\|Ga0070683_101612656	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300005332\|Ga0066388_100375482	Not Available	2068	Open in IMG/M
3300005332\|Ga0066388_100527495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1813	Open in IMG/M
3300005332\|Ga0066388_101380667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1222	Open in IMG/M
3300005332\|Ga0066388_101697326	Not Available	1117	Open in IMG/M
3300005332\|Ga0066388_102099700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300005332\|Ga0066388_102980959	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300005332\|Ga0066388_103000028	Not Available	862	Open in IMG/M
3300005332\|Ga0066388_103113056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	848	Open in IMG/M
3300005341\|Ga0070691_10089058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1519	Open in IMG/M
3300005355\|Ga0070671_101673825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	564	Open in IMG/M
3300005434\|Ga0070709_10000568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	21589	Open in IMG/M
3300005437\|Ga0070710_11390611	Not Available	524	Open in IMG/M
3300005468\|Ga0070707_101830861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	574	Open in IMG/M
3300005545\|Ga0070695_100004025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	8598	Open in IMG/M
3300005713\|Ga0066905_100156202	Not Available	1650	Open in IMG/M
3300005764\|Ga0066903_104766182	Not Available	721	Open in IMG/M
3300006172\|Ga0075018_10699862	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300006914\|Ga0075436_100001146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	17902	Open in IMG/M
3300009156\|Ga0111538_10420648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1692	Open in IMG/M
3300009156\|Ga0111538_12151990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	701	Open in IMG/M
3300009792\|Ga0126374_11798828	Not Available	512	Open in IMG/M
3300010043\|Ga0126380_10320227	Not Available	1114	Open in IMG/M
3300010043\|Ga0126380_10563078	Not Available	889	Open in IMG/M
3300010358\|Ga0126370_10723634	Not Available	877	Open in IMG/M
3300010359\|Ga0126376_12149095	Not Available	602	Open in IMG/M
3300010359\|Ga0126376_12457405	Not Available	568	Open in IMG/M
3300010359\|Ga0126376_12662495	Not Available	549	Open in IMG/M
3300010360\|Ga0126372_10631693	Not Available	1033	Open in IMG/M
3300010361\|Ga0126378_10000812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	22876	Open in IMG/M
3300010366\|Ga0126379_10886773	Not Available	994	Open in IMG/M
3300010366\|Ga0126379_12827076	Not Available	581	Open in IMG/M
3300010366\|Ga0126379_12967580	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300010398\|Ga0126383_12450436	Not Available	606	Open in IMG/M
3300010398\|Ga0126383_13121304	Not Available	541	Open in IMG/M
3300011120\|Ga0150983_11369926	Not Available	985	Open in IMG/M
3300012913\|Ga0157298_10003112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2288	Open in IMG/M
3300012948\|Ga0126375_12001501	Not Available	512	Open in IMG/M
3300012951\|Ga0164300_10750909	Not Available	598	Open in IMG/M
3300012958\|Ga0164299_10463027	Not Available	833	Open in IMG/M
3300012958\|Ga0164299_11501995	Not Available	526	Open in IMG/M
3300012960\|Ga0164301_10843545	Not Available	705	Open in IMG/M
3300012971\|Ga0126369_11291497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	820	Open in IMG/M
3300012971\|Ga0126369_12736998	Not Available	577	Open in IMG/M
3300012986\|Ga0164304_10699652	Not Available	770	Open in IMG/M
3300012986\|Ga0164304_10752784	Not Available	746	Open in IMG/M
3300013308\|Ga0157375_10004772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	11780	Open in IMG/M
3300014745\|Ga0157377_11137977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	600	Open in IMG/M
3300015077\|Ga0173483_10121553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1117	Open in IMG/M
3300015374\|Ga0132255_102484126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	791	Open in IMG/M
3300015374\|Ga0132255_102865535	Not Available	737	Open in IMG/M
3300016270\|Ga0182036_10321049	Not Available	1184	Open in IMG/M
3300016341\|Ga0182035_10006899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	6415	Open in IMG/M
3300016341\|Ga0182035_10824324	Not Available	815	Open in IMG/M
3300016341\|Ga0182035_11769879	Not Available	559	Open in IMG/M
3300016371\|Ga0182034_11335534	Not Available	626	Open in IMG/M
3300016422\|Ga0182039_11127801	Not Available	707	Open in IMG/M
3300019356\|Ga0173481_10051090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1423	Open in IMG/M
3300019356\|Ga0173481_10573384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	589	Open in IMG/M
3300019361\|Ga0173482_10000328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	8363	Open in IMG/M
3300020070\|Ga0206356_10841263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	786	Open in IMG/M
3300020078\|Ga0206352_10314696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	973	Open in IMG/M
3300021405\|Ga0210387_11538078	Not Available	568	Open in IMG/M
3300021478\|Ga0210402_10686310	Not Available	947	Open in IMG/M
3300021560\|Ga0126371_10569232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1282	Open in IMG/M
3300021560\|Ga0126371_11405000	Not Available	829	Open in IMG/M
3300022726\|Ga0242654_10152529	Not Available	773	Open in IMG/M
3300022915\|Ga0247790_10091761	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300025929\|Ga0207664_11880935	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300027695\|Ga0209966_1103447	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	645	Open in IMG/M
3300027703\|Ga0207862_1022472	Not Available	1886	Open in IMG/M
3300027874\|Ga0209465_10190762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300028597\|Ga0247820_10817438	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300028809\|Ga0247824_10096151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1557	Open in IMG/M
3300031573\|Ga0310915_10868500	Not Available	633	Open in IMG/M
3300031719\|Ga0306917_11300266	Not Available	563	Open in IMG/M
3300031771\|Ga0318546_10206865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1342	Open in IMG/M
3300031890\|Ga0306925_10124663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2758	Open in IMG/M
3300031890\|Ga0306925_10583099	Not Available	1183	Open in IMG/M
3300031912\|Ga0306921_10073069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	3939	Open in IMG/M
3300031941\|Ga0310912_10214024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1476	Open in IMG/M
3300031941\|Ga0310912_10365526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1122	Open in IMG/M
3300032054\|Ga0318570_10336466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	687	Open in IMG/M
3300032261\|Ga0306920_100551015	Not Available	1709	Open in IMG/M
3300032421\|Ga0310812_10474429	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.10%
Host-Associated	Host-Associated	9.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.11%
Plants	Host-Associated → Plants	9.90%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%
Sediment	Environmental → Aquatic → Sediment	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Loam	Environmental → Terrestrial → Soil → Loam	22.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01346030	2088090014	Soil	MKRLICALVALGLAAAFTAPVFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK
ICCgaii200_09614082	2228664021	Soil	MKTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI
INPgaii200_09178822	2228664022	Soil	MXTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI
INPhiseqgaiiFebDRAFT_1016161752	3300000364	Soil	MXTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
INPhiseqgaiiFebDRAFT_1016167442	3300000364	Soil	MKKIASMLVALGLAVAFTAPAFAGPGAQPLTKADCXXXGLKWNDQANVCAKGKI*
F24TB_103519552	3300000550	Soil	MKRLICALVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
JGI1027J12803_1041541091	3300000955	Soil	TLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
JGI10216J12902_1048881532	3300000956	Soil	MKRLISVMVALGLAAAFTAPAFAASANQPLTKSDCKKAGLKWDSQANICQAKGK*
JGI24033J26618_10526611	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	SVMKRLICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0062595_1004570582	3300004479	Soil	MRTLVSMLVALGLVASFRAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
Ga0062592_1015987901	3300004480	Soil	MKTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
Ga0066395_101964252	3300004633	Tropical Forest Soil	MKKFASLLVAIGLAVAFTAPSFAAGSAAQPLTKEDCKKSGLKWNEQSNVCGKGKF*
Ga0066395_104268961	3300004633	Tropical Forest Soil	MKRLISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK*
Ga0062591_1026123991	3300004643	Soil	MRTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
Ga0062594_1000282371	3300005093	Soil	MKGLVSIITLALAVAFTAPAFAASAGGQPLTKSECKKSGLMWNDQSNVCAIRGKR*
Ga0065705_101663972	3300005294	Switchgrass Rhizosphere	MKRLICALVALGLAAAFTAPVFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0070683_1016126561	3300005329	Corn Rhizosphere	MKRVICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0066388_1003754823	3300005332	Tropical Forest Soil	MTKLFSLLVALGLAVAFTAPSFAAGPAAQPLTKSDCKKSGLKWNEQTNVCGKARI*
Ga0066388_1005274954	3300005332	Tropical Forest Soil	MKTLVSILVALGLAVSFAAPAFAGPGAQPLTKADCKKAGLKWNDQTNVCAKGKM*
Ga0066388_1013806671	3300005332	Tropical Forest Soil	MKRLICTVVALGLAAAFMAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0066388_1016973261	3300005332	Tropical Forest Soil	AMKKFVSLVLALGLAMAFTAPSFAGGSKAQPLTKEDCKKAGLKWNDLGNVCGRGK*
Ga0066388_1020997001	3300005332	Tropical Forest Soil	MKKLASLLVALGLAVAFTAPSFAAPMAQPLTKSDCKKSGLKWNEQTNVCGKGRL*
Ga0066388_1029809591	3300005332	Tropical Forest Soil	MSVSLMVGLGLAAAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQANIRQAKGR*
Ga0066388_1030000282	3300005332	Tropical Forest Soil	MTKLTSILLALGLALAFTAPSFAAGPKAQPLTKEDCKKSGLKWNDESNVCGKGKI*
Ga0066388_1031130561	3300005332	Tropical Forest Soil	MKKLASLVVALGLAVAFTAPSFADPAAQPLTKSDCKKSGLKWNEQTNVCGKARI*
Ga0070691_100890582	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0070671_1016738252	3300005355	Switchgrass Rhizosphere	MKRLISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0070709_1000056811	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0070710_113906111	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLIFVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK*
Ga0070707_1018308612	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLISALVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWDSQANICQPKGK*
Ga0070695_1000040258	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ESVMKRLICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0066905_1001562022	3300005713	Tropical Forest Soil	MKKFVSLVLALGLAMAFTAPSFAGGSKAQPLTKEDCKKAGLKWNDLGNVCGRGK*
Ga0066903_1047661821	3300005764	Tropical Forest Soil	MKKLASMLLALGLAVAFAGPSLAAGSKAQPLTKEDCKKSGLKWSDESNVCGKGRL*
Ga0075018_106998622	3300006172	Watersheds	MKKIASLLIALGLAVAFTTPSFAGSPGAQPLTKADCKKAALKWNDLSNVCGKGKM*
Ga0075436_10000114614	3300006914	Populus Rhizosphere	MKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLTWNDQSNVCQAKGK*
Ga0111538_104206482	3300009156	Populus Rhizosphere	MLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI*
Ga0111538_121519901	3300009156	Populus Rhizosphere	MKRVICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0126374_117988282	3300009792	Tropical Forest Soil	LALGLAAAFAGPSFAAGSKAQPLTKEDCKKSGLKWSDESNVCGKGKI*
Ga0126380_103202272	3300010043	Tropical Forest Soil	MKKLVSLVLALGLAMAFTAPSFAGGSKAQPLTKEDCKKAGLKWNDLGNVCGRGK*
Ga0126380_105630781	3300010043	Tropical Forest Soil	MKKLASLLVALGLAVAFTAPSFAAPIAQPLTKSDCKKSGLKWNEQTNVCGKGRL*
Ga0126370_107236341	3300010358	Tropical Forest Soil	MKKLFSLLVALGLAVAFAAPSFAGTAAQPLTKSDCKKSGLKWNEQTNVCGKVRI*
Ga0126376_121490952	3300010359	Tropical Forest Soil	MTTLASLRVALSLAVAFTAPSFAAPIAQPLTKSDCKKSGLKWNEQTNVCGKGRI*
Ga0126376_124574051	3300010359	Tropical Forest Soil	MKKFVSLVLALGLAMAFTAPSFAGGSKAQPLTKEDCKKAGLKWNDLGNVCGKGK*
Ga0126376_126624951	3300010359	Tropical Forest Soil	MKKLVSLVLALGLAMAFTAPSFAGGSKAQPLTKEDCKKAGLKWNDLGNVCGKGK*
Ga0126372_106316933	3300010360	Tropical Forest Soil	KLASMLLALGLAVAFAGPSFAAGSKAQPLTKEDCKKSGLKWSDESNVCGKGKI*
Ga0126378_1000081212	3300010361	Tropical Forest Soil	MKRLIFVIVALGLAVGFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK*
Ga0126379_108867731	3300010366	Tropical Forest Soil	MKKLFSLLVALGLAVAFTAPSFAAGPAAQPLTKSDCKKSGLKWNEQTNVCGKARI*
Ga0126379_128270761	3300010366	Tropical Forest Soil	MKKLFSLLVALGLAVAFTAPSFAAGPAAQPLTKSDCKKSGLKWNEQTNVCGKA
Ga0126379_129675802	3300010366	Tropical Forest Soil	MKRLISALVALGLAVACTAPAFAAGPNQPLTKSDCKKAGLKWDSQANICQPKGK*
Ga0126383_124504362	3300010398	Tropical Forest Soil	MKKLASLLVALSLAVAFTAPSFAAPIAQPLTKSDCKKSGLKWNEQTNVCGKGRL*
Ga0126383_131213041	3300010398	Tropical Forest Soil	MKKLASLVVALGLAVAFTAPSFAAGPAAQPLTKSDCKKSGLKWNEQTNVCGKARI*
Ga0150983_113699261	3300011120	Forest Soil	TSTSTQGRNTMKTLVSVMALALAVAFTAPAFAGIGNQPLTKSDCKKAGLKWSEQANVCAKGK*
Ga0157298_100031123	3300012913	Soil	MKRLICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGN*
Ga0126375_120015011	3300012948	Tropical Forest Soil	MKKLASMLLALGLAVAFTGPSFAAGSKAQPLTKEDCKKSGLKWSDESNVCGKGKI*
Ga0164300_107509091	3300012951	Soil	MKKIASLLIALGLAVAFTAPSFAGSPGAQPLTKADCKKAALKWNDLSNVCGKGKM*
Ga0164299_104630273	3300012958	Soil	MKKIASLLIALGLAVAFTAPSFAGSPGAQPLTKADCKKAGLKWNDLGNVCGKGKM*
Ga0164299_115019951	3300012958	Soil	ALERRSVMKKLASLLVALGLAVAFTAPAFAAGPAAQPLTKADCKKSGLKWNYQTNVCGRGRI*
Ga0164301_108435452	3300012960	Soil	MKKLASLLVALGLAVAFTAPAFAAGPAAQPLTKADKKSGLKWNDQTNVCGRGRI*
Ga0126369_112914972	3300012971	Tropical Forest Soil	MKRLISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKNAGLKWNDQTNVCQAKGK*
Ga0126369_127369982	3300012971	Tropical Forest Soil	MKKLFSLLVALGLAVAFAAPSFAGPAAQPLTKSDCKKSGLKWNEQTNVCGKVRI*
Ga0164304_106996522	3300012986	Soil	MKKLASLLVALGLAVAFTAPAFAAGPAAQPLTKADKKSGLKWNDQTNVCGTGRI*
Ga0164304_107527841	3300012986	Soil	MKTLVSVMALALAVAFTAPAFAEIGNQPLTKSDCKKAGLKWSEQANVCAKGK*
Ga0157375_1000477210	3300013308	Miscanthus Rhizosphere	MKRLICAVVAVGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0157377_111379772	3300014745	Miscanthus Rhizosphere	VVLGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0173483_101215531	3300015077	Soil	KESVMKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK*
Ga0132255_1024841262	3300015374	Arabidopsis Rhizosphere	MKRVICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQTNVCQAKGK*
Ga0132255_1028655352	3300015374	Arabidopsis Rhizosphere	IQRARPEEHWKRRSVMKNFASLLVALGLAVAFTAPSFAAPIAQPLTKSDCKKSGLKWNEQTNVCGKGRL*
Ga0182036_103210492	3300016270	Soil	MKKLTSLLLALGLAVAFTAPSFAASPAAQPLTKQDCKNSGLKWNEQSNVCGKGKF
Ga0182035_100068993	3300016341	Soil	MKRMISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0182035_108243241	3300016341	Soil	LGLAVAFTAPSFAAPAAQPLTKSDCKKSGLKWNDQTNVCGKGRI
Ga0182035_117698791	3300016341	Soil	KLTSLLLALGLAVAFTAPSFAASPAAQPLTKQDCKNSGLKWNEQSNVCGKGKF
Ga0182034_113355342	3300016371	Soil	SLLIARGLAVAFTAPSVAAPAAQPLTKSDCKKSGLKWNDQTNVCGKGRI
Ga0182039_111278012	3300016422	Soil	LGLAVAFTAPSFAAGPAAQPLTKQDCKKSGLKWNEQSNVCGKAKF
Ga0173481_100510902	3300019356	Soil	MKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKLNDQSNVCQAKGK
Ga0173481_105733842	3300019356	Soil	MKRLVCALVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK
Ga0173482_100003286	3300019361	Soil	MKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK
Ga0206356_108412631	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLICAVVALGLAAAFTAPAFAAGPIQPLTKSDCKKAGLKWNDQSNVCQAKGK
Ga0206352_103146962	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MKRVICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK
Ga0210387_115380781	3300021405	Soil	STQGRNTMKTLVSVMALALAVAFTAPAFAGIGNQPLTKSDCKKAGLKWSEQANVCAKGK
Ga0210402_106863101	3300021478	Soil	MKTLVSVMALALAVAFTAPAFAGIGNQPLTKSDCKKAGLKWSEQANVCAKGK
Ga0126371_105692322	3300021560	Tropical Forest Soil	MKRLISALVALGLAVACTAPAFAAGPNQPLTKSDCKKAGLKWDSQANICQPKGK
Ga0126371_114050002	3300021560	Tropical Forest Soil	MKKFASLLVAIGLAVAFTAPSFAAGSAAQPLTKEDCKKSGLKWNQQSNVCGKGKF
Ga0242654_101525292	3300022726	Soil	ALSDDHLPWAATSTSTQGRITMKTLVSVMALALAVAFTAPAFAGIGNQPLTKSDCKKAGLKWSEQANVCAKGK
Ga0247790_100917612	3300022915	Soil	MKRLICAVVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLTWNDQSNVCQAKGK
Ga0207664_118809352	3300025929	Agricultural Soil	MKRLISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWND
Ga0209966_11034471	3300027695	Arabidopsis Thaliana Rhizosphere	KEICMKTLVSMLVALGLVASFSAPVFAGTGAQPLTKADCKKAGLKWNDQANVCAKGKI
Ga0207862_10224721	3300027703	Tropical Forest Soil	MKKLASMLVALGLAVAFTAPAFAAGPAAQPLTKLDCKKSGLRWNDQANVCGKGRI
Ga0209465_101907622	3300027874	Tropical Forest Soil	MKRLISALVALGLAVACTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0247820_108174381	3300028597	Soil	MKRLICALVALGLAAAFTAPVFAAGPTQPLTKSDCKKAGLKWNDQSN
Ga0247824_100961511	3300028809	Soil	TKESVMKRLICALVALGLAAAFTAPVFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK
Ga0310915_108685002	3300031573	Soil	MMKLTSLLLALGLAVAFTAPSFAAGPAAQPLTKQDCKKSGLKWNEQSNVCGKGKF
Ga0306917_113002661	3300031719	Soil	LLVALGLAVAFTAPSFAAPAAQPLTKSDCKKSGLKWNDQTNVCGKGRI
Ga0318546_102068652	3300031771	Soil	LTANWLRETKESIMKRMISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0306925_101246631	3300031890	Soil	MKRLISVIVALGLAVASTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0306925_105830992	3300031890	Soil	MKKLASLLVALGLAVAFTAPSFAAPAAQPLTKSDCKKSGLKWNDQTNVCGKGRI
Ga0306921_100730692	3300031912	Soil	MKRLISVVVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0310912_102140242	3300031941	Soil	FVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0310912_103655262	3300031941	Soil	MKKLTSLLLALGLAVAFTAPSFAAGPAAQPLTKQDCKKSGLKWNEQSNVCGKGKF
Ga0318570_103364662	3300032054	Soil	NWLRETKESIMKRLISVIVALGLAVAFTAPAFAAGPNQPLTKSDCKKAGLKWNDQTNVCQAKGK
Ga0306920_1005510153	3300032261	Soil	MKKLASLLVALGLAVAFTAPSFAAPAAQPLTKSDCKKSGLKWNEQTNVCGKGRI
Ga0310812_104744291	3300032421	Soil	ETKESVMKRLVCALVALGLAAAFTAPAFAAGPTQPLTKSDCKKAGLKWNDQSNVCQAKGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences