Metagenome / Metatranscriptome Family F103683

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103683
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	69 residues
Representative Sequence	VCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	88.12 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.723 % of family members)
Environment Ontology (ENVO)	Unclassified (29.703 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.535 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.88% β-sheet: 0.00% Coil/Unstructured: 44.12%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00106	adh_short	3.96
PF07883	Cupin_2	2.97
PF13561	adh_short_C2	2.97
PF11154	DUF2934	2.97
PF13683	rve_3	1.98
PF08241	Methyltransf_11	0.99
PF00072	Response_reg	0.99
PF04392	ABC_sub_bind	0.99
PF11149	DUF2924	0.99
PF02586	SRAP	0.99
PF01068	DNA_ligase_A_M	0.99
PF03797	Autotransporter	0.99
PF00211	Guanylate_cyc	0.99
PF17171	GST_C_6	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.99
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.99
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.99
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.99
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	94.06 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	93.07 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	90.10 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	89.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	89.11 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	89.11 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	89.11 %
Bradyrhizobium sp. 131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10172226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300000955\|JGI1027J12803_107235583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	864	Open in IMG/M
3300000955\|JGI1027J12803_109335225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300000956\|JGI10216J12902_108550087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300005167\|Ga0066672_10187442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1314	Open in IMG/M
3300005171\|Ga0066677_10415328	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300005178\|Ga0066688_10264137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300005332\|Ga0066388_102994065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300005435\|Ga0070714_100754718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	941	Open in IMG/M
3300005436\|Ga0070713_101386025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300005454\|Ga0066687_10137290	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300005467\|Ga0070706_101835852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300005518\|Ga0070699_100281935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1488	Open in IMG/M
3300005540\|Ga0066697_10114861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1576	Open in IMG/M
3300005554\|Ga0066661_10604335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300005556\|Ga0066707_10223852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1221	Open in IMG/M
3300005561\|Ga0066699_10935337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300005598\|Ga0066706_10120261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1938	Open in IMG/M
3300005598\|Ga0066706_10300941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1262	Open in IMG/M
3300005598\|Ga0066706_10971067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300005764\|Ga0066903_102572169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	986	Open in IMG/M
3300005764\|Ga0066903_107074380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300006028\|Ga0070717_11442876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300006028\|Ga0070717_11818014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300006032\|Ga0066696_10727956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300006046\|Ga0066652_102016760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300006175\|Ga0070712_100196252	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300006794\|Ga0066658_10670577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300006797\|Ga0066659_11339112	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300006852\|Ga0075433_11926795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300006854\|Ga0075425_101286323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300006871\|Ga0075434_101203404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300006871\|Ga0075434_102219237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300006953\|Ga0074063_14258634	All Organisms → cellular organisms → Bacteria → Proteobacteria	1561	Open in IMG/M
3300009012\|Ga0066710_103094532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300009137\|Ga0066709_101377297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1028	Open in IMG/M
3300009137\|Ga0066709_101951926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300009137\|Ga0066709_102756629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300009143\|Ga0099792_10146775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1295	Open in IMG/M
3300009156\|Ga0111538_13300409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300010326\|Ga0134065_10119394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300012198\|Ga0137364_10613178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	820	Open in IMG/M
3300012199\|Ga0137383_10641580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300012201\|Ga0137365_11225755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300012205\|Ga0137362_10248327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1537	Open in IMG/M
3300012205\|Ga0137362_10808079	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012206\|Ga0137380_11352331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300012207\|Ga0137381_11120210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300012211\|Ga0137377_11360571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300012355\|Ga0137369_10603898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300012357\|Ga0137384_10777595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	775	Open in IMG/M
3300012955\|Ga0164298_11456838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300012977\|Ga0134087_10832611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300014157\|Ga0134078_10035796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1654	Open in IMG/M
3300016270\|Ga0182036_10799549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300016294\|Ga0182041_11398189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300016445\|Ga0182038_11793566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300018433\|Ga0066667_11380867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300018468\|Ga0066662_12435050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300021170\|Ga0210400_11156222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300021432\|Ga0210384_11877235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300021478\|Ga0210402_11139188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300025910\|Ga0207684_11397244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300025910\|Ga0207684_11573587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300025922\|Ga0207646_10464639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1141	Open in IMG/M
3300026322\|Ga0209687_1232800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300026547\|Ga0209156_10383190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300026548\|Ga0209161_10556072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300027873\|Ga0209814_10495146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300027903\|Ga0209488_10136939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1847	Open in IMG/M
3300028884\|Ga0307308_10538444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300029636\|Ga0222749_10448773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	690	Open in IMG/M
3300031543\|Ga0318516_10687156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300031545\|Ga0318541_10230357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1028	Open in IMG/M
3300031549\|Ga0318571_10280164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300031572\|Ga0318515_10443498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300031573\|Ga0310915_10730214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031573\|Ga0310915_10743847	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300031573\|Ga0310915_10997210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031679\|Ga0318561_10696858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300031724\|Ga0318500_10399150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031736\|Ga0318501_10470054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300031744\|Ga0306918_10661994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300031794\|Ga0318503_10253562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300031796\|Ga0318576_10564088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031833\|Ga0310917_11125906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300031879\|Ga0306919_11300960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300031880\|Ga0318544_10246829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300031890\|Ga0306925_12140739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300031894\|Ga0318522_10235005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300031947\|Ga0310909_10584670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300032039\|Ga0318559_10403507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300032054\|Ga0318570_10294986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300032064\|Ga0318510_10377985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300032090\|Ga0318518_10460633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300032090\|Ga0318518_10475294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300032094\|Ga0318540_10577973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300032180\|Ga0307471_101621105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300032180\|Ga0307471_103539103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300033289\|Ga0310914_10986607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	742	Open in IMG/M
3300033289\|Ga0310914_11649444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.06%
Host-Associated	Host-Associated	5.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.06%
Plants	Host-Associated → Plants	5.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.20%
Loam	Environmental → Terrestrial → Soil → Loam	13.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	25.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101722261	3300000597	Forest Soil	GWEPASDEWEVCPCGWRPELGKHYAKTSHVQWWREQIKERGSLEAVYREIRRRQREYRDRDVG*
JGI1027J12803_1072355832	3300000955	Soil	PASEEWEVCPCGWRPELGKHYAKAGHAQWWREQIKERGSLDAVYREVRKRQRDYRATDVG
JGI1027J12803_1093352251	3300000955	Soil	VHGFHWFTVCAPAGWDPASDEWEICPCGWRPELGKHYAKAGHVQWWREQTKERGNLEAVYREVRKRQREYRDKDVG*
JGI10216J12902_1085500871	3300000956	Soil	GFHWFTVCAPAGWNPANDQWEVCPCGWRRELGEHYAKADHVQWWSEQIKERGSLEAVYREVRKRQREYRDRDMG*
Ga0066672_101874423	3300005167	Soil	LSGPAREEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0066677_104153281	3300005171	Soil	WDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0066688_102641372	3300005178	Soil	WDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0066388_1029940653	3300005332	Tropical Forest Soil	APVGWDPGSQDWHVCRCGWRPELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQREYRDRDMG*
Ga0070714_1007547181	3300005435	Agricultural Soil	PASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG
Ga0070713_1013860251	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	CAPAGWNPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG*
Ga0066687_101372901	3300005454	Soil	WFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0070706_1018358522	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0070699_1002819351	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GFHWFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRDIRKRQREYSDRDMG*
Ga0066697_101148612	3300005540	Soil	VHGFRWFTVCAPAGWDPATEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0066661_106043351	3300005554	Soil	VRGFSPGSFHCFQLLSGPAREEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0066707_102238521	3300005556	Soil	GVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG*
Ga0066699_109353371	3300005561	Soil	CAPAGWDPASDEWEVCPCVWRHELGKHYAKADHVQWWREQIKERGSFEAVYREVRKRQREYRDRDMG*
Ga0066706_101202612	3300005598	Soil	VHGFHWFTVCAPAGWDPASDEWEVCPCGWRHELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQSEYRDRDVG*
Ga0066706_103009413	3300005598	Soil	LSGPAREEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLETVYREVRRRQREYGDADVG*
Ga0066706_109710673	3300005598	Soil	TANGVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG*
Ga0066903_1025721691	3300005764	Tropical Forest Soil	VHGFHWFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKASHVQWWREQIKERESLEAVYREVRRRQREYRNRDVG*
Ga0066903_1070743801	3300005764	Tropical Forest Soil	APVGWDPGSQDWHVCRCGWRPELGKHYAKADHVQWWREQIKERGSLEAVYREVHKRQREYRDRDMG*
Ga0070717_114428761	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VHGFHWFTVCAPAGWEPASDEWEVCPCGWRRELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQREYRDRDVG*
Ga0070717_118180142	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TAATANGVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG*
Ga0066696_107279562	3300006032	Soil	VIHTAATANGVHGFHWFTVCAPAGWNPANDQWEVCPCGWRRELGKHYAKADHVQWWSEQIKKRGSLEAVYREVRKRQREYRDRDMG*
Ga0066652_1020167601	3300006046	Soil	AATANGVHGFHWFTVCAPAGWDPATDEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0070712_1001962521	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ASDEWEVCPCGWRRELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQREYRDRDVG*
Ga0066658_106705771	3300006794	Soil	VRGFSPGSFHCFQLLSGPAREEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0066659_113391122	3300006797	Soil	WDPASEEWEVCPCGWRPELGKHYAKAGHVQWLREQIKERGSLEAVYREIPTFQATS*
Ga0075433_119267951	3300006852	Populus Rhizosphere	SEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRGVRKRQRDYRRTDVG*
Ga0075425_1012863232	3300006854	Populus Rhizosphere	MFLPASIGFRWFTVCAPAGWDPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG*
Ga0075434_1012034041	3300006871	Populus Rhizosphere	VCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG*
Ga0075434_1022192373	3300006871	Populus Rhizosphere	VCAPAGWDPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG*
Ga0074063_142586346	3300006953	Soil	CAPAGWDPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG*
Ga0066710_1030945321	3300009012	Grasslands Soil	MGPGTDEWEVCPCGWRPELGKHYAKADHVQWWREQIKERGRLEAVYREVRRRQREYGD
Ga0066709_1013772972	3300009137	Grasslands Soil	EEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0066709_1019519261	3300009137	Grasslands Soil	VHGFHWFTVCAPAGWDPATDEWEVCPCGWRRELGKHYAKADHVQWWREQIKERGSFEAVYREVRKRQREYRDRDMG*
Ga0066709_1027566291	3300009137	Grasslands Soil	MGPGTDEWEVCPCGWRPELGKHYAKADHVQWWREQIKERGRLEAVYREVRRRQREYGDTDVG*
Ga0099792_101467751	3300009143	Vadose Zone Soil	ASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG*
Ga0111538_133004091	3300009156	Populus Rhizosphere	SEEWEVCPCGWRPELRKHYAKASHVQWWREQIRERGSLKAVYHEVRRRQREYRDTDVG*
Ga0134065_101193941	3300010326	Grasslands Soil	VCAPAGWDPATDEWEVCPCGWRPELGKHYAKADHVQWWREQIKERGSLETVYREVRRRQREYGDADVG*
Ga0137364_106131782	3300012198	Vadose Zone Soil	VCAPAGWDPGSEEWEVCPCGWCPELGKHYANAGHVQWWREQIKERGSLEAVYREVRKRQRDYRRTDVG*
Ga0137383_106415801	3300012199	Vadose Zone Soil	TADGVHGFRWFTACAPAGWDPASDEWEVCPCVWRPELGKHYAKASHVQWWREQIKERGSLEAVYREIRRRQREYRDTDVG*
Ga0137365_112257551	3300012201	Vadose Zone Soil	GVHGFRWFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKADHVQWWHEQIKERGSLQAVYREVRRRQREYRNTDVG*
Ga0137362_102483271	3300012205	Vadose Zone Soil	TANGVHGFRWFTLCAPAGWDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG*
Ga0137362_108080791	3300012205	Vadose Zone Soil	SEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLGAVYREVRRRQREYRDTDVG*
Ga0137380_113523311	3300012206	Vadose Zone Soil	RWFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKADHVQWWHEQIKERGSLQAVYREVRRRQREYRNTDVG*
Ga0137381_111202102	3300012207	Vadose Zone Soil	PAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG*
Ga0137377_113605713	3300012211	Vadose Zone Soil	AGWDPGSEEWEVCPCGWCPELGKHYANAGHVQWWREQIKERGSLEAVYREVRKRQRDYRRTDVG*
Ga0137369_106038981	3300012355	Vadose Zone Soil	AGWDPASEEWEVCPCGWRRELGKHYAKADHVQWWREQIKERGSLGAVYREVRKRQREYRDRDVG*
Ga0137384_107775951	3300012357	Vadose Zone Soil	ASEEWEVCPCGWRPELGKHYAKADHVQWWHEQIKERGSLQAVYREVRRRQREYRNTDVG*
Ga0164298_114568381	3300012955	Soil	TFTVRAPAGWNPASDEWEVCQCGWRRELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQREYRDRDVGCTK*
Ga0134087_108326111	3300012977	Grasslands Soil	TANGVHGFRWFTLCAPAGWDPAREEWEVCPCGWRPELGKHHAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0134078_100357964	3300014157	Grasslands Soil	WDPAREEWEVCQCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG*
Ga0182036_107995491	3300016270	Soil	HGFHWFTVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0182041_113981893	3300016294	Soil	GFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHHAKASHVQWWRDQIKERGSLEAVYREVRRRQREYRDTDVG
Ga0182038_117935662	3300016445	Soil	DVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRDVRKRQREYGDRDMG
Ga0066667_113808672	3300018433	Grasslands Soil	VCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG
Ga0066662_124350502	3300018468	Grasslands Soil	FHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG
Ga0210400_111562221	3300021170	Soil	AATADGVHGFRWFTVCAPAGWNPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0210384_118772352	3300021432	Soil	VCSPAGWNPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0210402_111391881	3300021478	Soil	NGVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRDTDVG
Ga0207684_113972441	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AGWDPASEEWKVCPCGWRPELGKHYAKADHVQWWHEQIKERGSLQAVYREVRRRQREYRNTDVG
Ga0207684_115735871	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PASDEWEVCPCGWRPELGKHYAKASHVQWWREQIKERGSLEAVYREIRRRQREYRDTDVG
Ga0207646_104646392	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	CAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG
Ga0209687_12328002	3300026322	Soil	WFTVCAPAGWDPATEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREVRRRQREYGDADVG
Ga0209156_103831901	3300026547	Soil	QVCPCGWRPELGTHYAKAGHVQWWREQIKERGSLGAVYREVRRRQRQYGDTDMG
Ga0209161_105560721	3300026548	Soil	GFHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG
Ga0209814_104951462	3300027873	Populus Rhizosphere	MFLPASIGFRWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVHRRQREYRDRDVG
Ga0209488_101369392	3300027903	Vadose Zone Soil	HWFTVCAPAGWDPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0307308_105384441	3300028884	Soil	APAGWDPARDEWEVCPCGWRRELGKHYAKADHVQWWREQIKERGSLEAVYREVRKRQREYRDRDVG
Ga0222749_104487732	3300029636	Soil	GFHWFTVCAPAGWDPASEEWEVCPCGWRTELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0318516_106871562	3300031543	Soil	TAATANGVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0318541_102303571	3300031545	Soil	WFTVSAPAVWDPASEEWDVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRDVRKRQREYGDRDMG
Ga0318571_102801642	3300031549	Soil	VHGFHWFTVCAPARWDPASEEWEVCSCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318515_104434981	3300031572	Soil	TVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0310915_107302141	3300031573	Soil	VCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0310915_107438473	3300031573	Soil	DPASEEWEVCPCGWRPELRKHYAKASHVQWWRDQIKERGSLEAVYREVRRRQREYRDTDV
Ga0310915_109972101	3300031573	Soil	AGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318561_106968581	3300031679	Soil	FTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318500_103991501	3300031724	Soil	GFHWFTVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0318501_104700542	3300031736	Soil	VCAPARWDPASEEWEVCSCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0306918_106619942	3300031744	Soil	TVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0318503_102535621	3300031794	Soil	GWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318576_105640882	3300031796	Soil	SSDEWEVCSCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0310917_111259062	3300031833	Soil	ATANGVHGFHWFTVCAPARWDPASEEWEVCSCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0306919_113009602	3300031879	Soil	FTVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0318544_102468291	3300031880	Soil	GFRWFTVCAPAGWDPASEEWVVCPCGWRTELRKHYAKTSHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0306925_121407391	3300031890	Soil	FHWFTVCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318522_102350051	3300031894	Soil	VCAPAGWDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0310909_105846701	3300031947	Soil	EVCSCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318559_104035071	3300032039	Soil	ANGVYGFHWFTVSAPAVWDPASEEWDVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRHVRKRQREYGDRDMG
Ga0318570_102949861	3300032054	Soil	VYGFHWFTVSAPAVWDPASEEWDVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYRHVRKRQREYGDRDMG
Ga0318510_103779852	3300032064	Soil	WVVCPCGWRTELRKHYAKTSHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0318518_104606331	3300032090	Soil	VCAPAGWDSASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDVG
Ga0318518_104752941	3300032090	Soil	EWVVCPCGWRTELRKHYAKTSHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0318540_105779732	3300032094	Soil	ANGVHGFHWFTVCAPAGWDPASEEWEVCPCGWRPKLRKHYAKASHVQWWREQIKERGSLEAAYREIRRRQREYRDTDVG
Ga0307471_1016211051	3300032180	Hardwood Forest Soil	WDPASEEWEVCPCGWRPELRKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG
Ga0307471_1035391032	3300032180	Hardwood Forest Soil	TANGVHGFRWFTVCAPAGWDPASEEWEVCPCGWRPELGKHYAKAGHVQWWREQIKERGSLEAVYREIRRRQREYGDMDVG
Ga0310914_109866071	3300033289	Soil	DPASEEWEVCPCGWRPELGKHYAKASHVQWWREQIKERGSLEAVYREVRRRQREYRNRDV
Ga0310914_116494441	3300033289	Soil	TAATADGVHGFRWFTVCAPAGWDPASEEWVVCPCGWRTELRKHYAKTSHVQWWREQIKERGSLEAVYREVRRRQREYRNTDVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103683

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences