NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103666

Metagenome / Metatranscriptome Family F103666

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103666
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 61 residues
Representative Sequence ARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA
Number of Associated Samples 92
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 1.98 %
% of genes from short scaffolds (< 2000 bps) 0.99 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.010 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(29.703 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.525 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.66%    β-sheet: 39.02%    Coil/Unstructured: 57.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF09537DUF2383 33.66
PF00296Bac_luciferase 9.90
PF13669Glyoxalase_4 9.90
PF13282DUF4070 3.96
PF01124MAPEG 0.99
PF13742tRNA_anti_2 0.99
PF13847Methyltransf_31 0.99
PF13442Cytochrome_CBB3 0.99
PF01145Band_7 0.99
PF028262-Hacid_dh_C 0.99
PF13229Beta_helix 0.99
PF01053Cys_Met_Meta_PP 0.99
PF02668TauD 0.99
PF12706Lactamase_B_2 0.99
PF09297zf-NADH-PPase 0.99
PF01850PIN 0.99
PF01872RibD_C 0.99
PF00753Lactamase_B 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 9.90
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.99
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.99
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.99
COG0272NAD-dependent DNA ligaseReplication, recombination and repair [L] 0.99
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.99
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.99
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.99
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.99
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.99
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.99
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.99
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.99
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 0.99
COG2816NADH pyrophosphatase NudC, Nudix superfamilyNucleotide transport and metabolism [F] 0.99
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.99
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.01 %
All OrganismsrootAll Organisms0.99 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300012200|Ga0137382_10330606Not Available1067Open in IMG/M
3300028906|Ga0308309_10124012All Organisms → cellular organisms → Bacteria → Proteobacteria2040Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil12.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.94%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.96%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.97%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.97%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.97%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.98%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.98%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.99%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.99%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.99%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.99%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.99%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300014052Permafrost microbial communities from Nunavut, Canada - A23_35cm_12MEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020082Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021441Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1Host-AssociatedOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11292936313300000956SoilFGSRYEASNISYRFEGRVSDGAMTGTVLLGAASDQNAGIVNRSQFGAGAWEARRVA*
Ga0062590_10152112223300004157SoilISYRFEGRVSDGAMAGTVQLGAASDQNSGLVNRTQFGAGAWEARRVA*
Ga0062594_10219196623300005093SoilHEAATISYRFEGSVADGEMEGTVLLGAASDQNQGIVNRTQFGAGSWEARRLT*
Ga0066677_1045540223300005171SoilSYRFEGTVEDGAMAGTVALGAASDQNAGIVNRSQFGSGQWQARRVA*
Ga0066673_1055365233300005175SoilASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066679_1068326633300005176SoilARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066684_1049826013300005179SoilGPVSGALDGDTIRFSFGGRYDASNLSYRFEGRVSDGAMAGTVELGAASDTSNGIVNRSQFGSGEWQARRLA*
Ga0066671_1025257833300005184SoilYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066671_1049438913300005184SoilYDASNLSYRFEGRISDGAMAGTVELGAASDQNGGVVNRSQFGSGEWQARRIA*
Ga0070680_10137397813300005336Corn RhizosphereEASSISYRFTGKIRDGLMAGTVLLGAASDQNSGIVNRTQFGTGDWEARRVG*
Ga0070691_1075650523300005341Corn, Switchgrass And Miscanthus RhizosphereYEASNISYRFEGRVSDGAMAGTVLLGAASDQNSGIVNRSQFGAGSWQAQRIA*
Ga0070671_10119987623300005355Switchgrass RhizosphereVEGALDGDTVRFAFGGRYEASNISYRFEGRVSDGAMAGTVQLGAASDQNSGVVNRTQFGAGAWEARRLA*
Ga0070688_10029993533300005365Switchgrass RhizosphereEGPVTGAIEADAIRFSFTSRYEASNISYRFEGKVQDGRMSGTVDLGAASDQNSGVVNRSQFGSGEWEARRVA*
Ga0070713_10037386033300005436Corn, Switchgrass And Miscanthus RhizospherePLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLG*
Ga0070713_10182844413300005436Corn, Switchgrass And Miscanthus RhizospherePLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066682_1089633613300005450SoilGRYEASNLAYCFEGRVEDGAMAGTVELGAASDQNGGIVNRSQFGAGEWQARRVA*
Ga0070681_1167678023300005458Corn RhizosphereGRYEASNISYRFEGRVANGGMAGTVLLGAASDQNSGVVNRTQFGAGEWEARRVA*
Ga0070741_1091049813300005529Surface SoilHEAATISYRFDGRVADGAMEGTVLLGAASDQNQGIVNRTQFGAGSWRAHRLG*
Ga0070735_1093164423300005534Surface SoilFAGRYEASTLSYRFDGRVAGGMMSGTVALGAASDQNAGLVNRSQFGAGQWQARRQG*
Ga0066697_1036837313300005540SoilGVLDGDTVRFSFGARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0070732_1046889813300005542Surface SoilAFGGRYEAATISFRFEGKVGDGAMSGLVELGAASDQNSGIVNRSQFGTGE*
Ga0070695_10167286613300005545Corn, Switchgrass And Miscanthus RhizosphereFDGPLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0068855_10093748633300005563Corn RhizosphereFDGPVEGTVDGERVRFWFGGRYEASNIYYRFEGRVSDGAMAGTVLLGAASDQNSGIVNRSQFGPGAWEARRVA*
Ga0066693_1007965333300005566SoilQFEGPLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066694_1049092413300005574SoilASNLSYRFEGRVSDGAMAGTVELGAASDTSNGIVNRSQFGSGEWQARRLA*
Ga0068856_10003236713300005614Corn RhizosphereGDTVRFSFGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLG*
Ga0070766_1022217113300005921SoilGPVTGSLDADLIRFSFADRYEASNLSYCFEGRIQNGAMAGTVELGAASDQNGGVVNRGQFGTGEWQARRIAGG*
Ga0066696_1031784113300006032SoilSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLG*
Ga0070712_10060951513300006175Corn, Switchgrass And Miscanthus RhizosphereGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0070712_10070144213300006175Corn, Switchgrass And Miscanthus RhizosphereDGDTVRFSFGGRYDASNLSYRFEGRVSDGAMAGTVELGAASDTSNGIVNRSQFGSGEWQARRLA*
Ga0075424_10237776323300006904Populus RhizosphereSYRFEGRVRNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0079219_1129269813300006954Agricultural SoilDTVRFSFGARYEASNMSYRFEGRVSNGTMEGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0066710_10268376213300009012Grasslands SoilDGPVTGSLDADVIRFSFAGRYEGSNLSYCFEGRVQNGAMAGTVELGAASDQNSGIVNRSQFGSGEWQAKRTA
Ga0066710_10426228623300009012Grasslands SoilDGPVTGSLDADVIRFSFAGRYEGSNLSYCFEGRVQNGAMAGTVELGAASDQNGGIVNRSQFGSGEWQAWRVA
Ga0099830_1071329223300009088Vadose Zone SoilFEGPVTGTLEADLICFSFGSRHEASNLSYRFEGTVAGGEMGGTVALGAASDQNAGIVNRSQFGSGQWQARRVMR*
Ga0099827_1195117023300009090Vadose Zone SoilIRFSFDGRYEASTISYRFEGTVGDGAMAGTVKLGAASDQNQGIVNRSQFGSGRWEPSRVT
Ga0066709_10336106023300009137Grasslands SoilGALEADVIQFSFGGRYEASNISYRFEGRVRDGAMAGTVLLGAASDQNAGIVNKSQFGAGEWQARRIA*
Ga0126313_1169665423300009840Serpentine SoilFTGRHEAATISYCFEGSVADGEMAGTVLLGAASDQNQGIVNRTEFGAGSWQACRLA*
Ga0126308_1074343313300010040Serpentine SoilHFSFGSRYEASNLSYRFEGRVSDGTMAGTVLLGAASDQNSGIVNRSQFGSGEWHARRLG*
Ga0126310_1133210923300010044Serpentine SoilVAAVDGEIDADRVRFAFTGRHEAATISYRFEGSVADGEMAGTVLLGAASDQNQGIVNRTQFGAGSWQARRLA*
Ga0126372_1132356923300010360Tropical Forest SoilVEGALDGDTVRFSFGARYEASNMSYWFEGRVAKGTMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0134066_1037728813300010364Grasslands SoilRFEGRVSNGTMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0126381_10388668413300010376Tropical Forest SoilPVFDGPIEGALDGDTVRFSFGTRYEASNMSYRFEGRVSDGTLAGTVELGAASAQNAGLVNRTQFGSGAWQARRLA*
Ga0137392_1088472423300011269Vadose Zone SoilLRANESAAASSTVALGAASDQNGGIVNRSQFGGGEWQARRLA*
Ga0137383_1073203113300012199Vadose Zone SoilYCFEGRVQDGAMAGTVELGAASDQNGGIVNRSQFGAGEWQARRVA*
Ga0137382_1033060613300012200Vadose Zone SoilVTGSLDADVIRFSFAGRYEASNLSYCFEGRVQDGAMAGTVELGAASDQNGGIVNRSQFGAGEWQARRLA*
Ga0137362_1030280613300012205Vadose Zone SoilEADLIRFSFGSRYEASNLSYRFEGTVADGEMGGTVALGAASDQNAGVVNRSQFGTGEWQARRVM*
Ga0137381_1107841413300012207Vadose Zone SoilLDADMIRFTFDGRYEASTISYRFEGKVGDGAMAGTVVLGAASDQNAGIVNRSQFGTGKWQARRVT*
Ga0150985_10351420623300012212Avena Fatua RhizosphereVEGTLNGEAIRFAFGGRYEASNISYRFEGRVSDGAMAGTVLLGAASDQNAGLVNRSQFGAGAWEARRVA*
Ga0150985_11589629113300012212Avena Fatua RhizosphereLDRDTVRFSFGARYEASNMSYRFQGRVSDGAMAGTVELGAPSDQNAGIVNRTQFGSGAWQARRVT*
Ga0137390_1179462723300012363Vadose Zone SoilDADRVSFSFGNRHEASNLSYRFEGTVEDGAMAGTVALGAASDQNAGIVNRSQFGTGQWQARRVA*
Ga0150984_12023247133300012469Avena Fatua RhizosphereGEIDADRIRLAFAGRHEAATISYLFEGRVAEGEMTGTVLLGAASDQNQGIVNRTQFGAGSWQARRLA*
Ga0157295_1038112523300012906SoilVSGAIDFDHIRLAFEGRHEAATISYCFEGRIAAGEMEGTVLLGAASDQNQGIVNRTQFGAGSWRARRLT*
Ga0137395_1104214823300012917Vadose Zone SoilGAINGSARCGGRVADGAMAGIVALGAASDQNAGIVNRSQFGAGQWQARRVA*
Ga0137416_1132688823300012927Vadose Zone SoilADLIRFSFGSRYEASNLSYRFEGTVADGEMGGTVALGAASDQNAGVVNRSQFGTGQWQARRLA*
Ga0164306_1126347623300012988SoilAGTLDADVIRFSFGGRYEASTMSYRFEGKVADGAMAGTVLLGAASDQNQGIVNRTQFGAGSWQARRLA*
Ga0164305_1112604713300012989SoilLDGDTVRFSFGARYEASNMSYRFQGRVSDGTMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0120109_108817823300014052PermafrostGGAGAGWRRGRYEAATISFYFEGQVGDGAMSGKVELGAASDQNSGIVNRSQFGAGQWQAHRVD*
Ga0137418_1025835943300015241Vadose Zone SoilAVEADRVRFAFDGRHEAAILSFRFEGKVANGTMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA*
Ga0132255_10324220413300015374Arabidopsis RhizosphereNISYRFEGRVSDGAMAGTVLLGAASDQNSGVVNRTQFGAGAWEARRLA*
Ga0132255_10499775223300015374Arabidopsis RhizosphereEQFEGPVDGEIDADRVRFAFTGRHEAATISYRFEGSVADGEMAGTVLLGAASDQNQGIVNRTQFGAGSWEARRLT*
Ga0187817_1050185023300017955Freshwater SedimentFGGRYEAATISFRFEGKIRNGAMSGIVELGAASDQNNGIVNRSQFGAGEWRARRVA
Ga0187777_1030838243300017974Tropical PeatlandNLSYRFEGRVADGAMGGTVVLGAASDQNAGLVNRSQFGSGTWQARRTA
Ga0184619_1055570313300018061Groundwater SedimentRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA
Ga0187772_1037089223300018085Tropical PeatlandEASNISFNFEGQVRNGAMSGTVELGAASDQNSGVVNRSQFGSGEWHAKRVA
Ga0187771_1099480133300018088Tropical PeatlandLIRFAFTGRYEASTISYRFEGRVADGAMAGTVQLGAASDQNAGIVNKSQFGAGEWQARRI
Ga0066662_1008941613300018468Grasslands SoilGVLDGDTVRFSFGARYEASNMSYRFEGRVSDGAMVGTVELGAASDQNAGIVNRTQFGSGAWQARRLA
Ga0066669_1029250913300018482Grasslands SoilQFEGPLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGSGAWQARRLA
Ga0066669_1046494413300018482Grasslands SoilSNLSYRFEGRVSDGTMAGTVELGAASDTSNGIVNRSQFGSGAWEARRLA
Ga0182025_138022543300019786PermafrostMSYRFEGRVKDGRMNGTVALGAASDQNSGLVNRTQFGMGEWSARRVA
Ga0206353_1118520723300020082Corn, Switchgrass And Miscanthus RhizosphereFGGRYEASNISYRFEGRVSDGAMAGTVLLGAASDQNSGIVNRSQFGPGAWEARRVA
Ga0210393_1154358013300021401SoilFAFGGRYEAATISFRFEGRVGDGAMSGTVELGAASDQNSGIVNRSQFGIGEWRARRVA
Ga0210383_1091464413300021407SoilASKLSYRFEGRLKDGAMAGTVMLGAASDQNGGVVNRSQFGAGEWRAKRVA
Ga0213871_1018320423300021441RhizosphereVEADRIAFAFEARHEGSRISYRFDGRVADGRMSGTVALGANSEQSPGIVNRSQFGEGRWQASRVG
Ga0210398_1108854713300021477SoilRFEGRLKDGAMEGIVKLGAASDQNSGIVNRTQFGTGEWRAKRVA
Ga0207660_1107520013300025917Corn RhizosphereGRFEASSISYRFTGKIRDGLMAGTVLLGAASDQNSGIVNRTQFGTGDWEARRVG
Ga0207701_1071200513300025930Corn, Switchgrass And Miscanthus RhizosphereQFEGPVEGALDGEAIRFSFGGRYEASNISYRFEGRVSDGAMAGTVLLGAASDQNSGVVNRTQFGAGEWEARRVA
Ga0207690_1187691823300025932Corn RhizosphereRHEAATISYRFEGSVADGEMSGTVMLGAASDQNQGIVNRTQFGAGSWEARRLT
Ga0207712_1118470823300025961Switchgrass RhizosphereQHSEQFEGPVSGEIDGDRICFAFAGRHEAATLSYRFEGSVADGKMEGTVLLGAASDQNQGIVNRSQFGSGRWRASRMARG
Ga0207702_1011417353300026078Corn RhizosphereRSAQFDGPLQGVLDGDTVRFSFGARYEASNMSYRFEGRVSNGTMVGTVELGAASDQNAGIVNRTQFGSGAWQARRLG
Ga0207702_1197629013300026078Corn RhizosphereRLAFEGRHEAATISYRFDGRVTEGAMEGTVLLGAASDQNQGIVNRTQFGAGSWRARRVG
Ga0207674_1059954643300026116Corn RhizosphereVRFAFTGRHEAATISYRFEGIVVNGEMTGTVLLGAASDQNQGIVNCTQFGGGSWRARRVA
Ga0207675_10224970813300026118Switchgrass RhizosphereVRFWFGGRYEASNISYRFEGRVANGGMAGTVLLGAASDQNGGVVNRTQFGAGEWEARRVA
Ga0207683_1087243513300026121Miscanthus RhizosphereDGDRVRFAFGSRYEASNISYRFEGRVGDGAMSGTVLLGAASDQNSGVVNRTQFGAGAWEARRLA
Ga0207698_1190239723300026142Corn RhizosphereVRFWFGGRYEASNISYRFEGRVSDGAMAGTVLLGAASDQNSGVVNRSQFGPGAWEARRVA
Ga0209153_129324413300026312SoilFGFGARYEASNMSYRFEGRVSDGAMAGTVELGAASDQNAGIVNRTQFGNGAWQARRLA
Ga0209156_1030931623300026547SoilGALEGDTVRFSFGGRYDASNLSYRFEGRVSDGAMAGTVELGAASDTSNGIVNRSQFGSGEWQARRLA
Ga0209474_1076046713300026550SoilPVEGALDGDTVRFSFGSRYEASNLSYRFEGRVSDGTMGGTVMLGAASDQNSGIVNKSQFGTGEWQARRVG
Ga0209112_1036730723300027817Forest SoilEASNLSYRFEGRLKDGAMAGTVMLGAASDQNSGIVNRTQFGAGEWRAHRV
Ga0268266_1192078023300028379Switchgrass RhizosphereGEIDGDRICFTFAGRHEAATISNRFDGHVANGHMEGTVLLGAASDQNQGIVNRTQFGAGSWEARRLA
Ga0137415_1047898233300028536Vadose Zone SoilSFGSRYEASNLSYRFEGTVADGEMGGTVALGAASDQNAGVVNRSQFGTGQWQARRLA
Ga0308309_1012401243300028906SoilGPVTGSLDADVIRFSFAGRYEASNLSYCFEGRVQNGAMAGTVELGAASDQNGGVVNRSQFGTGEWQARRIA
Ga0170818_11324341123300031474Forest SoilVEADMIRFTFDGRYEASTISYRFEGKVADGAMAGTVLLGAASDQNSGIVNRSQFGTGEWQARRVA
Ga0302326_1349658223300031525PalsaAQFDGPVEGAIEADIVRFWFQQRYEASNLSYRFEGKIADGAMAGTVMLGAASDQNGGIVNRGQFGAGEWQAKRVA
Ga0310686_11056823313300031708SoilSSFGGRYEASNLSYLFEGKLRDGAMSGTVHLGAASDQNSGIVNKSQFGSGEWEARRVA
Ga0307477_1082690113300031753Hardwood Forest SoilGALDGDAIRFSFGQRYEASNLSYRFEGRVKNGSMGGTVHLGAASDQNSGIVNKSQFGAGEWQARRVA
Ga0307479_1105952313300031962Hardwood Forest SoilAQFAGPVKGAIEEDRIRFAFDGRYEASTMSFRFEGRVADGAMAGTVALGAASDQNQGIVNRSQFGSGAWQARRVD
Ga0335082_1056657133300032782SoilEGSLDGATIRFSFAGRYEASNLSYRFEGRVADGAMAGTVALGAASDQNSGLVNRSQFGTGTWQAQRLS
Ga0335081_1018349313300032892SoilYEAATISFHFEGRVAGGAMAGTVALGAASDQNSGIVNRSQFGAGEWRARRVA
Ga0335081_1046805343300032892SoilFGGRYEASNLSYRFEGRVGDGAMAGTVVLGAASDQNAGLVNRSQFGSGTWQARRIA
Ga0335077_1166390513300033158SoilGESVRFSFGGRYEAATISFHFEGRVAGGAMAGTVALGAASDQNSGIVNRSQFGAGEWRARRVA


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