Metagenome / Metatranscriptome Family F103648

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103648
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	120 residues
Representative Sequence	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Number of Associated Samples	96
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.28 %
% of genes near scaffold ends (potentially truncated)	48.51 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.842 % of family members)
Environment Ontology (ENVO)	Unclassified (34.653 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.584 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 78.86% β-sheet: 0.00% Coil/Unstructured: 21.14%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF05656	DUF805	32.67
PF07813	LTXXQ	2.97
PF13180	PDZ_2	1.98
PF00672	HAMP	1.98
PF00230	MIP	1.98
PF05661	DUF808	1.98
PF13515	FUSC_2	1.98
PF00211	Guanylate_cyc	1.98
PF00550	PP-binding	0.99
PF00839	Cys_rich_FGFR	0.99
PF13545	HTH_Crp_2	0.99
PF01648	ACPS	0.99
PF06186	DUF992	0.99
PF03446	NAD_binding_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	32.67
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	11.88
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	1.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.98
COG2354	Membrane protein MutK/YedI, may be involved in DNA repair	Replication, recombination and repair [L]	1.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.54 %
Unclassified	root	N/A	45.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.97 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	40.59 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	1.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.99 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.85 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	11.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.97 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.98 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.99 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	11.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.90 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2.97 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	1.98 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1.98 %
Cognatiyoonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Cognatiyoonia	0.99 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	11.88 %
Glaciibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter	2.97 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	1.98 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	1.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.99 %
Cognatiyoonia sediminum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Cognatiyoonia → Cognatiyoonia sediminum	0.99 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	11.88 %
Glaciibacter superstes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter → Glaciibacter superstes	2.97 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1.98 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	1.98 %
Pseudopedobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pseudopedobacter	0.99 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.99 %
Cognatiyoonia sediminum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Cognatiyoonia → Cognatiyoonia sediminum	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	11.88 %
Glaciibacter superstes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter → Glaciibacter superstes	2.97 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1.98 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	1.98 %
Pseudopedobacter saltans	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pseudopedobacter → Pseudopedobacter saltans	0.99 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.99 %
Cognatiyoonia sediminum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Cognatiyoonia → Cognatiyoonia sediminum	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102IBEQ4	Not Available	507	Open in IMG/M
2228664022\|INPgaii200_c1172284	Not Available	695	Open in IMG/M
3300000044\|ARSoilOldRDRAFT_c027222	Not Available	520	Open in IMG/M
3300000890\|JGI11643J12802_10353821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	557	Open in IMG/M
3300000955\|JGI1027J12803_102694388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1918	Open in IMG/M
3300000956\|JGI10216J12902_109536017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2568	Open in IMG/M
3300002074\|JGI24748J21848_1042521	Not Available	580	Open in IMG/M
3300005103\|Ga0066813_1004659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter → Glaciibacter superstes	692	Open in IMG/M
3300005162\|Ga0066814_10074859	Not Available	599	Open in IMG/M
3300005164\|Ga0066815_10086668	Not Available	572	Open in IMG/M
3300005169\|Ga0066810_10026529	Not Available	1007	Open in IMG/M
3300005294\|Ga0065705_10182817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1554	Open in IMG/M
3300005328\|Ga0070676_10290774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1104	Open in IMG/M
3300005367\|Ga0070667_100361496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1316	Open in IMG/M
3300005406\|Ga0070703_10187124	Not Available	804	Open in IMG/M
3300005439\|Ga0070711_100070290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2464	Open in IMG/M
3300005539\|Ga0068853_100990492	Not Available	809	Open in IMG/M
3300005546\|Ga0070696_101270227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter → Glaciibacter superstes	624	Open in IMG/M
3300005577\|Ga0068857_102002587	Not Available	568	Open in IMG/M
3300005614\|Ga0068856_101916018	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Pseudopedobacter → Pseudopedobacter saltans	604	Open in IMG/M
3300005841\|Ga0068863_100082358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3049	Open in IMG/M
3300006041\|Ga0075023_100135085	Not Available	893	Open in IMG/M
3300006047\|Ga0075024_100100835	Not Available	1266	Open in IMG/M
3300006050\|Ga0075028_100276179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	930	Open in IMG/M
3300006051\|Ga0075364_11204256	Not Available	513	Open in IMG/M
3300006175\|Ga0070712_100914927	Not Available	757	Open in IMG/M
3300006354\|Ga0075021_10677126	Not Available	662	Open in IMG/M
3300006603\|Ga0074064_11224066	Not Available	614	Open in IMG/M
3300006844\|Ga0075428_100751893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	1037	Open in IMG/M
3300006852\|Ga0075433_11822782	Not Available	523	Open in IMG/M
3300006854\|Ga0075425_100101060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3278	Open in IMG/M
3300007076\|Ga0075435_100163387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1876	Open in IMG/M
3300009100\|Ga0075418_10921697	Not Available	945	Open in IMG/M
3300010396\|Ga0134126_10581950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1282	Open in IMG/M
3300010400\|Ga0134122_10045903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3343	Open in IMG/M
3300010403\|Ga0134123_10130676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	2048	Open in IMG/M
3300012492\|Ga0157335_1000342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2057	Open in IMG/M
3300012495\|Ga0157323_1012466	Not Available	701	Open in IMG/M
3300012497\|Ga0157319_1036896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	555	Open in IMG/M
3300012499\|Ga0157350_1058102	Not Available	508	Open in IMG/M
3300012517\|Ga0157354_1002392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1416	Open in IMG/M
3300012941\|Ga0162652_100060363	Not Available	632	Open in IMG/M
3300012957\|Ga0164303_10124604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1321	Open in IMG/M
3300012960\|Ga0164301_10090390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1726	Open in IMG/M
3300012985\|Ga0164308_10018579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	3995	Open in IMG/M
3300015371\|Ga0132258_10141947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5748	Open in IMG/M
3300015371\|Ga0132258_10826954	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300015372\|Ga0132256_101050755	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300015372\|Ga0132256_102293061	Not Available	643	Open in IMG/M
3300015374\|Ga0132255_100439788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1906	Open in IMG/M
3300018028\|Ga0184608_10098831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1217	Open in IMG/M
3300018074\|Ga0184640_10471197	Not Available	556	Open in IMG/M
3300019875\|Ga0193701_1033787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1050	Open in IMG/M
3300019879\|Ga0193723_1023035	Not Available	1901	Open in IMG/M
3300019879\|Ga0193723_1026874	Not Available	1746	Open in IMG/M
3300022694\|Ga0222623_10366095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Cognatiyoonia → Cognatiyoonia sediminum	550	Open in IMG/M
3300022756\|Ga0222622_11122964	Not Available	578	Open in IMG/M
3300024254\|Ga0247661_1107550	Not Available	530	Open in IMG/M
3300025735\|Ga0207713_1109561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	941	Open in IMG/M
3300025899\|Ga0207642_10285249	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300025900\|Ga0207710_10426674	Not Available	683	Open in IMG/M
3300025904\|Ga0207647_10195666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1170	Open in IMG/M
3300025914\|Ga0207671_10468646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1004	Open in IMG/M
3300025915\|Ga0207693_10381575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1102	Open in IMG/M
3300025918\|Ga0207662_10018645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3941	Open in IMG/M
3300025919\|Ga0207657_10777190	Not Available	741	Open in IMG/M
3300025923\|Ga0207681_10452467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1045	Open in IMG/M
3300025929\|Ga0207664_10563856	Not Available	1022	Open in IMG/M
3300025986\|Ga0207658_10161205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1838	Open in IMG/M
3300027523\|Ga0208890_1079043	Not Available	541	Open in IMG/M
3300027873\|Ga0209814_10071847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1454	Open in IMG/M
3300027894\|Ga0209068_10723404	Not Available	584	Open in IMG/M
3300027915\|Ga0209069_10117017	Not Available	1299	Open in IMG/M
3300028381\|Ga0268264_10126473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2259	Open in IMG/M
3300028784\|Ga0307282_10184900	Not Available	994	Open in IMG/M
3300028787\|Ga0307323_10334027	Not Available	543	Open in IMG/M
3300028807\|Ga0307305_10465348	Not Available	568	Open in IMG/M
3300028811\|Ga0307292_10093192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1177	Open in IMG/M
3300028828\|Ga0307312_10415495	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300030916\|Ga0075386_12222368	Not Available	1826	Open in IMG/M
3300031057\|Ga0170834_100093005	Not Available	1173	Open in IMG/M
3300031128\|Ga0170823_11873949	Not Available	506	Open in IMG/M
3300031170\|Ga0307498_10000041	All Organisms → cellular organisms → Bacteria → Proteobacteria	12538	Open in IMG/M
3300031184\|Ga0307499_10007954	Not Available	2118	Open in IMG/M
3300031198\|Ga0307500_10073009	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300031200\|Ga0307496_10082213	Not Available	600	Open in IMG/M
3300031231\|Ga0170824_106434533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9182	Open in IMG/M
3300031231\|Ga0170824_107809183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4761	Open in IMG/M
3300031455\|Ga0307505_10167947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1006	Open in IMG/M
3300031469\|Ga0170819_16150107	Not Available	1266	Open in IMG/M
3300031474\|Ga0170818_103758248	All Organisms → cellular organisms → Bacteria → Proteobacteria	9729	Open in IMG/M
3300031538\|Ga0310888_10132442	Not Available	1310	Open in IMG/M
3300031740\|Ga0307468_100662798	Not Available	865	Open in IMG/M
3300032000\|Ga0310903_10727859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Glaciibacter → Glaciibacter superstes	538	Open in IMG/M
3300032012\|Ga0310902_10240782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1084	Open in IMG/M
3300032180\|Ga0307471_100952656	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300032205\|Ga0307472_101738295	Not Available	617	Open in IMG/M
3300033433\|Ga0326726_10058144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3393	Open in IMG/M
3300033433\|Ga0326726_10472188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1197	Open in IMG/M
3300034090\|Ga0326723_0128532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	1106	Open in IMG/M
3300034819\|Ga0373958_0099842	Not Available	680	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.33%
Host-Associated	Host-Associated	32.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.43%
Plants	Host-Associated → Plants	32.67%
Aquatic	Environmental → Aquatic	9.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.86%
Sediment	Environmental → Aquatic → Sediment	9.90%
Peat	Environmental → Terrestrial → Peat	2.97%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.99%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Loam	Environmental → Terrestrial → Soil → Loam	6.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.99%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300005103	Soil and rhizosphere microbial communities from Laval, Canada - mgLAA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012497	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_06905350	2170459002	Grass Soil	MHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVIEIISGDKAKTQSYCDMTKLDEQIKQAKREKRTSKNSQ*VSQKLDLLEERLGPEYVALMDGLEDIDPKS
INPgaii200_11722841	2228664022	Soil	LVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEENLGPEYVALMDGLEDIDPKSEVAQEIESVLDGLYDNLCGE
ARSoilOldRDRAFT_0272221	3300000044	Arabidopsis Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
JGI11643J12802_103538211	3300000890	Soil	AILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDGLYDNLCGE*
JGI1027J12803_1026943883	3300000955	Soil	MNPKFVIAILVIAAVPLGFFSLRTHQVTKADAQEVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPKYVALMDGLDDIDPKSEVVQEIEAVLDDLYDNL
JGI10216J12902_1095360172	3300000956	Soil	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDDLCGG*
JGI24748J21848_10425211	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESI
Ga0066813_10046592	3300005103	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLHDNLCGG*
Ga0066814_100748591	3300005162	Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKAAAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0066815_100866681	3300005164	Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0066810_100265292	3300005169	Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGGS*
Ga0065705_101828172	3300005294	Switchgrass Rhizosphere	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDGLYDNLCGE*
Ga0070676_102907741	3300005328	Miscanthus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKHAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0070667_1003614961	3300005367	Switchgrass Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKHAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0070703_101871242	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDL
Ga0070711_1000702903	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSEKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0068853_1009904921	3300005539	Corn Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCRG*
Ga0070696_1012702272	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LMNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0068857_1020025871	3300005577	Corn Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPNVAQQIESILDDLYDNLCGG*
Ga0068856_1019160181	3300005614	Corn Rhizosphere	MNPKLIIALLVITAVPLDFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDI
Ga0068863_1000823586	3300005841	Switchgrass Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDV
Ga0075023_1001350852	3300006041	Watersheds	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQSYCNMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIESVLDDLYDNLCGS*
Ga0075024_1001008351	3300006047	Watersheds	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0075028_1002761791	3300006050	Watersheds	LLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDALEDIDPKSEVAQEIESVLDDLYDNLCGG*
Ga0075364_112042561	3300006051	Populus Endosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDD
Ga0070712_1009149272	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SGRGPQSNRGKGGLMSSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALIDGLEDIDPKSEVALEIESILDDLYDNLCGGS*
Ga0075021_106771261	3300006354	Watersheds	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDN
Ga0074064_112240662	3300006603	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEESLGPEYVALMDGLEDIDPEKDKLGAEIMSMFEALDDRLCA
Ga0075428_1007518931	3300006844	Populus Rhizosphere	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDNLCGE*
Ga0075433_118227822	3300006852	Populus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKS
Ga0075425_1001010603	3300006854	Populus Rhizosphere	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTTLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDDLCGG*
Ga0075435_1001633873	3300007076	Populus Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDP
Ga0075418_109216971	3300009100	Populus Rhizosphere	FFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDDLCGG*
Ga0134126_105819502	3300010396	Terrestrial Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGNKAKTQSYCDMTKLDEPIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0134122_100459034	3300010400	Terrestrial Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGNKAKTQSYCDMTKLDGPIKQSKEKKDSKTVNELSQKLDLLEESLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0134123_101306762	3300010403	Terrestrial Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDGKTANELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0157335_10003423	3300012492	Arabidopsis Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQEVLKIISGDKAKTQSYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0157323_10124662	3300012495	Arabidopsis Rhizosphere	THQVNKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0157319_10368962	3300012497	Arabidopsis Rhizosphere	KLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSAVAQQIESILDDLYDNLCGG
Ga0157350_10581021	3300012499	Unplanted Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKAVNELSQKLDLLEERLGREYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0157354_10023921	3300012517	Unplanted Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGNKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0162652_1000603631	3300012941	Soil	MNPKLIIAILVIAAVPLGFLSLRTHSVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLENIDPKSEVAQEIESVLDDLYDNLCGG*
Ga0164303_101246042	3300012957	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKTDAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0164301_100903902	3300012960	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSEKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDTLCGG*
Ga0164308_100185794	3300012985	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGREYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG*
Ga0132258_101419476	3300015371	Arabidopsis Rhizosphere	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQSYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIESVLDDLYDNLCGG*
Ga0132258_108269542	3300015371	Arabidopsis Rhizosphere	MNQKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDRLEDIDPKSEVAQEIESALDYLYDNLCGG*
Ga0132256_1010507551	3300015372	Arabidopsis Rhizosphere	MNQKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPK
Ga0132256_1022930611	3300015372	Arabidopsis Rhizosphere	LMNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQSYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIESVLDDLYDNLCGG*
Ga0132255_1004397881	3300015374	Arabidopsis Rhizosphere	AVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDRLEDIDPKSEVAQEIESALDYLYDNLCGG*
Ga0184608_100988311	3300018028	Groundwater Sediment	RRMPLMKPKLIIAILVIAAVPVCAQAQKPSAKVTRADAQKVLKIISGDKAKTQSYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDNLCGG
Ga0184640_104711971	3300018074	Groundwater Sediment	PRRMPQVGFSFVNFIWIRRHHRGRHNRKRPLMKPKLIIAILVIAAVPVCAQAQKPSAKVTRADAQKVLKIISGDKAKTRTYCDMTKLGEQIEQANEKKDNKMVNELSQKLVTLGEKLGPEYVALMDGLQDINPESKVGQEIESVLLGLDNLCGG
Ga0193701_10337871	3300019875	Soil	RVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDDLCGG
Ga0193723_10230353	3300019879	Soil	MTQSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDNLCGG
Ga0193723_10268741	3300019879	Soil	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQSYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYAALMDGLEDIDPKSEVALEIESVLDDLYDNLCGG
Ga0222623_103660952	3300022694	Groundwater Sediment	GFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSEVAQEIELVL
Ga0222622_111229641	3300022756	Groundwater Sediment	MTQSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQI
Ga0247661_11075501	3300024254	Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCG
Ga0207713_11095612	3300025735	Switchgrass Rhizosphere	SLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0207642_102852492	3300025899	Miscanthus Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKDKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0207710_104266741	3300025900	Switchgrass Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYD
Ga0207647_101956662	3300025904	Corn Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKHAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0207671_104686462	3300025914	Corn Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIE
Ga0207693_103815752	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALIDGLEDIDPKSEVALEIESILDDLYDNLCGGS
Ga0207662_100186451	3300025918	Switchgrass Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCG
Ga0207657_107771901	3300025919	Corn Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSD
Ga0207681_104524672	3300025923	Switchgrass Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0207664_105638561	3300025929	Agricultural Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVTQQIESILDDLYDNLCGG
Ga0207658_101612052	3300025986	Switchgrass Rhizosphere	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKHAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0208890_10790431	3300027523	Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYIALMDGLEDIDPKSDVAQQIESILDDLYDNL
Ga0209814_100718472	3300027873	Populus Rhizosphere	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDDLCGG
Ga0209068_107234041	3300027894	Watersheds	LIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDIAQQIESILADLSDNLCGG
Ga0209069_101170171	3300027915	Watersheds	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0268264_101264733	3300028381	Switchgrass Rhizosphere	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDD
Ga0307282_101849002	3300028784	Soil	MTQSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKRDSKTVNKLSQKLDLLEERLGPKYVALMDGLEDIDPKSEVAQEIELVL
Ga0307323_103340271	3300028787	Soil	PLMTQSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDNLCGG
Ga0307305_104653482	3300028807	Soil	GFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDNLCGG
Ga0307292_100931923	3300028811	Soil	MNLKLIAAILVIAAVPVCAKAQKPSAATKADAQKVLKIISGDKAKTRTYCDMTKLSEQIEQANEKKDNKMVNELSQKLAALGEKLGPEYVALMDGLQDID
Ga0307312_104154952	3300028828	Soil	DCRCPLLGVKRTCGGHHRKPANDPKRTYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDIYDNLCGG
Ga0075386_122223681	3300030916	Soil	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEIALEIESVLD
Ga0170834_1000930051	3300031057	Forest Soil	MNSRLIIAILVIAAMPLGFFTLRAHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIETVLDDLYDNLCGG
Ga0170823_118739491	3300031128	Forest Soil	AILVIAAMPLGFFTLRAHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIESVLDDLYDNLCGS
Ga0307498_100000418	3300031170	Soil	MTQSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESLLDDIYDNLCGG
Ga0307499_100079543	3300031184	Soil	MNSKLIIAILVIAAMPLGFFTLRAHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALQIESALDDLYDNLCGGS
Ga0307500_100730092	3300031198	Soil	MNSKLIIAILVIAAMPLGFFTLRAHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVA
Ga0307496_100822132	3300031200	Soil	MTSEQYWTSVQSPERLARVQFLELPVKSLMHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGL
Ga0170824_1064345336	3300031231	Forest Soil	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEIALEIESVLDDLYDNLCGS
Ga0170824_1078091832	3300031231	Forest Soil	MHPKLIIAVLVITAVPLGFFSLRTHQVTKADAQKVIEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0307505_101679472	3300031455	Soil	MNSKLIIAILVIAAMPLGFFTLRAHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVALEIESVLDDLYDNLCGS
Ga0170819_161501073	3300031469	Forest Soil	GGLMNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEIALEIESVLDDLYDNLCGS
Ga0170818_1037582482	3300031474	Forest Soil	MNSKLIIAILVIAAMPLGFFTLRTHQVTKADAQEVLKIISGDKAKTQTYCDMTRLDEQIKQAKEKKDSKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSETALEIESVLDDLYDNLCGS
Ga0310888_101324422	3300031538	Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIES
Ga0307468_1006627981	3300031740	Hardwood Forest Soil	MNPKLIIALLVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDNKTVNELSQKLDLLEEKLGPEYVALMDGLEDIDPKSEVAQEIESVLDDLYDNLCGG
Ga0310903_107278592	3300032000	Soil	RTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIEAILDDLYDNLCGG
Ga0310902_102407822	3300032012	Soil	AVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESILDDLYDNLCGG
Ga0307471_1009526562	3300032180	Hardwood Forest Soil	MNRKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDLTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSEVALQIESALDDLYDNLCGG
Ga0307472_1017382952	3300032205	Hardwood Forest Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQI
Ga0326726_100581443	3300033433	Peat Soil	MNPKLIIAILVIAAVPLGFFSLRTHQVTKADAQKVAKIISGDKAKTQPYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDALEDIDPKSEVAQEIESVLDDLYDNLCGG
Ga0326726_104721882	3300033433	Peat Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKENKDSKTVNVLTQKLDLLEERLGPEYVALMDALEDIDPKSEVAQEIESVLD
Ga0326723_0128532_87_458	3300034090	Peat Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVLKIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDALEDIDPKSEVAQEIESVLDDLYDNLCGG
Ga0373958_0099842_343_678	3300034819	Rhizosphere Soil	MNPKLIIAILVITAVPLGFFSLRTHQVTKADAQKVVEIISGDKAKTQSYCDMTKLDEQIKQAKEKKDSKTVNELSQKLDLLEERLGPEYVALMDGLEDIDPKSDVAQQIESI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103648

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences