Metagenome Family F103533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103533
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	92 residues
Representative Sequence	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR
Number of Associated Samples	86
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.70 %
% of genes near scaffold ends (potentially truncated)	36.63 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.178 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.802 % of family members)
Environment Ontology (ENVO)	Unclassified (34.653 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.18% β-sheet: 0.00% Coil/Unstructured: 40.82%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02518	HATPase_c	24.75
PF04675	DNA_ligase_A_N	14.85
PF00155	Aminotran_1_2	11.88
PF08447	PAS_3	4.95
PF00027	cNMP_binding	2.97
PF05721	PhyH	2.97
PF13490	zf-HC2	2.97
PF07992	Pyr_redox_2	0.99
PF07690	MFS_1	0.99
PF01869	BcrAD_BadFG	0.99
PF00037	Fer4	0.99
PF04237	YjbR	0.99
PF00440	TetR_N	0.99
PF04679	DNA_ligase_A_C	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	15.84
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.97
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.44 %
Unclassified	root	N/A	17.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	53.47 %
Unclassified	root	N/A	17.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.62 %
Unclassified	root	N/A	17.82 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	32.67 %
Unclassified	root	N/A	17.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.96 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.99 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.67 %
Unclassified	root	N/A	17.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.96 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.99 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.67 %
Unclassified	root	N/A	17.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.96 %
Geomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas	0.99 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.67 %
Unclassified	root	N/A	17.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.96 %
unclassified Geomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas	0.99 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.67 %
Unclassified	root	N/A	17.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.96 %
Geomonas sp. RF6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas → Geomonas sp. RF6	0.99 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0726308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300000156\|NODE_c0738703	All Organisms → cellular organisms → Bacteria	11684	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101913272	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101913873	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300000891\|JGI10214J12806_11015560	Not Available	501	Open in IMG/M
3300000956\|JGI10216J12902_102151169	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300000956\|JGI10216J12902_106686411	Not Available	612	Open in IMG/M
3300003267\|soilL1_10061490	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300003321\|soilH1_10132098	All Organisms → cellular organisms → Bacteria	3913	Open in IMG/M
3300004114\|Ga0062593_103172333	Not Available	527	Open in IMG/M
3300004479\|Ga0062595_100650773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	834	Open in IMG/M
3300005332\|Ga0066388_100097747	All Organisms → cellular organisms → Bacteria	3388	Open in IMG/M
3300005332\|Ga0066388_100749281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1577	Open in IMG/M
3300005332\|Ga0066388_100785721	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300005341\|Ga0070691_10261901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	931	Open in IMG/M
3300005713\|Ga0066905_101412130	Not Available	630	Open in IMG/M
3300005764\|Ga0066903_101352721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1334	Open in IMG/M
3300005937\|Ga0081455_10012152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8602	Open in IMG/M
3300006058\|Ga0075432_10034540	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300006196\|Ga0075422_10034280	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300006844\|Ga0075428_100609837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1165	Open in IMG/M
3300006845\|Ga0075421_100509252	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300006847\|Ga0075431_100411008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1353	Open in IMG/M
3300006852\|Ga0075433_10681858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	900	Open in IMG/M
3300006853\|Ga0075420_100803456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300006854\|Ga0075425_100572698	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300006871\|Ga0075434_100551360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1172	Open in IMG/M
3300006969\|Ga0075419_10222619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1254	Open in IMG/M
3300009094\|Ga0111539_10034751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6107	Open in IMG/M
3300009094\|Ga0111539_11899175	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300009094\|Ga0111539_12185275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300009156\|Ga0111538_11792716	Not Available	773	Open in IMG/M
3300009162\|Ga0075423_12486404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300009840\|Ga0126313_10003156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9453	Open in IMG/M
3300010038\|Ga0126315_10020410	All Organisms → cellular organisms → Bacteria	3317	Open in IMG/M
3300010039\|Ga0126309_10195103	Not Available	1117	Open in IMG/M
3300010040\|Ga0126308_10059317	Not Available	2247	Open in IMG/M
3300010041\|Ga0126312_10291769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1149	Open in IMG/M
3300010045\|Ga0126311_10678947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300010047\|Ga0126382_11493956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300010359\|Ga0126376_11075647	Not Available	811	Open in IMG/M
3300010362\|Ga0126377_10085233	All Organisms → cellular organisms → Bacteria	2846	Open in IMG/M
3300010362\|Ga0126377_10200821	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geomonas → unclassified Geomonas → Geomonas sp. RF6	1911	Open in IMG/M
3300011000\|Ga0138513_100045782	Not Available	659	Open in IMG/M
3300011003\|Ga0138514_100026127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1079	Open in IMG/M
3300012483\|Ga0157337_1023513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300012496\|Ga0157353_1018388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300012514\|Ga0157330_1014149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	831	Open in IMG/M
3300012899\|Ga0157299_10053535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	913	Open in IMG/M
3300012901\|Ga0157288_10009372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1585	Open in IMG/M
3300012901\|Ga0157288_10044787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1000	Open in IMG/M
3300012905\|Ga0157296_10029785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1149	Open in IMG/M
3300012915\|Ga0157302_10012966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2005	Open in IMG/M
3300012938\|Ga0162651_100038257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300012941\|Ga0162652_100081777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300012948\|Ga0126375_11091911	Not Available	657	Open in IMG/M
3300013306\|Ga0163162_12004361	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300015200\|Ga0173480_10024208	All Organisms → cellular organisms → Bacteria	2567	Open in IMG/M
3300015371\|Ga0132258_10219542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4624	Open in IMG/M
3300015372\|Ga0132256_100092853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2921	Open in IMG/M
3300015374\|Ga0132255_102924645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	730	Open in IMG/M
3300018027\|Ga0184605_10045307	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300018027\|Ga0184605_10078244	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300018061\|Ga0184619_10101877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1290	Open in IMG/M
3300018061\|Ga0184619_10208201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	899	Open in IMG/M
3300018061\|Ga0184619_10411638	Not Available	609	Open in IMG/M
3300018073\|Ga0184624_10059953	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300019356\|Ga0173481_10016707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2172	Open in IMG/M
3300021080\|Ga0210382_10405310	Not Available	603	Open in IMG/M
3300022899\|Ga0247795_1015495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1220	Open in IMG/M
3300023062\|Ga0247791_1034594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300023069\|Ga0247751_1095479	Not Available	532	Open in IMG/M
3300023071\|Ga0247752_1026940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	838	Open in IMG/M
3300025927\|Ga0207687_11140932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	670	Open in IMG/M
3300026815\|Ga0207442_100458	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300027483\|Ga0207637_1004238	Not Available	734	Open in IMG/M
3300027880\|Ga0209481_10325768	Not Available	781	Open in IMG/M
3300027907\|Ga0207428_10001543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	24104	Open in IMG/M
3300027907\|Ga0207428_10136270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1877	Open in IMG/M
3300027993\|Ga0247749_1007573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022	Open in IMG/M
3300028711\|Ga0307293_10105218	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300028722\|Ga0307319_10001931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6336	Open in IMG/M
3300028722\|Ga0307319_10014026	All Organisms → cellular organisms → Bacteria	2447	Open in IMG/M
3300028744\|Ga0307318_10076301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1122	Open in IMG/M
3300028771\|Ga0307320_10095048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1129	Open in IMG/M
3300028771\|Ga0307320_10177655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	829	Open in IMG/M
3300028784\|Ga0307282_10100151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1344	Open in IMG/M
3300028807\|Ga0307305_10162071	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1032	Open in IMG/M
3300028814\|Ga0307302_10246827	All Organisms → cellular organisms → Bacteria → Terrabacteria group	874	Open in IMG/M
3300028878\|Ga0307278_10239736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	805	Open in IMG/M
3300028880\|Ga0307300_10139334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300028884\|Ga0307308_10126233	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1223	Open in IMG/M
3300031852\|Ga0307410_11400686	Not Available	614	Open in IMG/M
3300031911\|Ga0307412_11724109	Not Available	575	Open in IMG/M
3300031938\|Ga0308175_100242269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1804	Open in IMG/M
3300031996\|Ga0308176_10466601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1275	Open in IMG/M
3300031996\|Ga0308176_12657043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300032012\|Ga0310902_11302649	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032180\|Ga0307471_102802729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300033551\|Ga0247830_10601896	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300034172\|Ga0334913_130215	Not Available	536	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.28%
Host-Associated	Host-Associated	26.73%
Engineered	Engineered	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.35%
Plants	Host-Associated → Plants	26.73%
Aquatic	Environmental → Aquatic	6.93%
Solid Waste	Engineered → Solid Waste	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.78%
Sediment	Environmental → Aquatic → Sediment	5.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.95%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.96%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Grass	Engineered → Solid Waste → Grass	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.94%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%
Composting	Engineered → Solid Waste → Grass → Composting	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.95%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.96%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026815	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes)	Environmental	Open in IMG/M
3300027483	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027993	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07263082	2228664021	Soil	MATPEPAFSGWWAQVQEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLTKEP
NODE_07387039	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MGADPARRWPLADWRALVHEIAWEAVRRGGGEHADLEWLPPVIEARLARRVDLLDRAGATDEELAAARDELVLWAIDRLNDAQPTRRSLNRSAWPARLAARRGRRPGARG
INPhiseqgaiiFebDRAFT_1019132722	3300000364	Soil	MATPEPAFSGWWAQVQEIAWAAVQRGGGEHSDLEWLPDGVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLXKEPPPRRTLSRSAWPARLR*
INPhiseqgaiiFebDRAFT_1019138733	3300000364	Soil	MATPEPALSGWWAQVHEIAWAAVQRGGGDHADLEWLPAVVEARLAHRVDLLERAGATEEELGAAREELVEWAVGLLGKQQPPRRTLSRSAWPARLR*
JGI10214J12806_110155601	3300000891	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRK
JGI10216J12902_1021511692	3300000956	Soil	MATPEPAPLSGWWALVHDIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAREELVEWAVGLVRKQPPPRRMLSRSAWPAKLR*
JGI10216J12902_1066864112	3300000956	Soil	AQVHEIAWAAVQRGGGDHADLEWLPAVVEARLAHRVDLLERAGATEEELGAAREELVEWAVGLLGKQQPPRRTLSRSAWPARLR*
soilL1_100614904	3300003267	Sugarcane Root And Bulk Soil	MGAWEPARSWPGGAWRAAAHEIAWEAVRRGGEHADLDWLPAVVEARLAHRLDLLERAGATEEELVATREELVEWAVGLLGERRPPRRGLNRSAWPARLR*
soilH1_101320982	3300003321	Sugarcane Root And Bulk Soil	MGAWEPARSWPGGAWRAAAHEIAWEAVRRGGEHADLDWLPAVVEARLAHRLDLLERAGATEEELVAAREELVEWAVGLLGERRPPRRGLNRSAWPARLR*
Ga0062593_1031723331	3300004114	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR*
Ga0062595_1006507732	3300004479	Soil	MATPEPALSGWWAQVHEIAWAAVQRGGGEHADLEWLPAAVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLGKQPPPKRMLSRSAWPARLR*
Ga0066388_1000977472	3300005332	Tropical Forest Soil	MVTPEPALSSWWAQVHEIAWAAVQRGGGEHADLEWLPAAVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGQLGKQPPPRRTLSRSAWPARLR*
Ga0066388_1007492812	3300005332	Tropical Forest Soil	MATPEPAPVPNRWAAQVHEIAWAAVQRGEGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVDWAVGLLRKEPPPRRILSRSAWPARIR*
Ga0066388_1007857212	3300005332	Tropical Forest Soil	MATPEPAPVPNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLFERAGATEEELAEAREQMVDWAVDLLRQEPPPKRTLSRSAWPARLR*
Ga0070691_102619012	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLRKEPPPRRTLSRS
Ga0066905_1014121302	3300005713	Tropical Forest Soil	AWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVEWAAGLLEKQPPPRRILSRSAWPARLR*
Ga0066903_1013527212	3300005764	Tropical Forest Soil	MATPEPAPVPNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLFERAGATEEELAEAREQMVDWAVDLLRQEPPPRRILSRSAWPARLR*
Ga0081455_100121525	3300005937	Tabebuia Heterophylla Rhizosphere	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLFERAGATEEELAAAREQMVEWAVDLLRQEPPPRRTLSRSAWPARLR*
Ga0075432_100345402	3300006058	Populus Rhizosphere	MATPESAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0075422_100342802	3300006196	Populus Rhizosphere	MATPEPAFSGWWAQVQEIAWVAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEMVEWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0075428_1006098372	3300006844	Populus Rhizosphere	MATPEPAFSGWWAQVQEIAWVAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEMVEWAVGLLRQEPPPRRTLSRSAWPARLR*
Ga0075421_1005092522	3300006845	Populus Rhizosphere	VHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR*
Ga0075431_1004110082	3300006847	Populus Rhizosphere	MATPESAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVGWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0075433_106818582	3300006852	Populus Rhizosphere	MATPESAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRKEPPPRRTLSRSAWPARLR*
Ga0075420_1008034561	3300006853	Populus Rhizosphere	MATPEPAFSGWWAQVQEIAWVAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEMVEWAVGLLRQEPPPRRTLSRS
Ga0075425_1005726982	3300006854	Populus Rhizosphere	MATPESAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRQEPPPRRTLSRSAWPARLR*
Ga0075434_1005513602	3300006871	Populus Rhizosphere	VAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEMVEWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0075419_102226192	3300006969	Populus Rhizosphere	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLRKEPPPRRTLSRSAWPARLR*
Ga0111539_100347514	3300009094	Populus Rhizosphere	MATPEPAFSGWWAQVQEIAWVAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEIVEWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0111539_118991752	3300009094	Populus Rhizosphere	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR*
Ga0111539_121852752	3300009094	Populus Rhizosphere	VHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRQEPPPRRTLSRSAWPARLR*
Ga0111538_117927162	3300009156	Populus Rhizosphere	MATPESAFSGWRAKVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVGWAVGLLRQEPPPRRTLSRSARPARLR*
Ga0075423_124864042	3300009162	Populus Rhizosphere	MATPEPAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRQEPPPRRTLSRSAWPARLR*
Ga0126313_100031566	3300009840	Serpentine Soil	MSAAPRRIEAAEPLGFPSPAGWRAAVHEIAWTAVRRSGGDHADLEWLPAVVEEKLAARVDILERAGATGEELAAAYDDVIGWATELLSEQRSPRRSGALTRSAWPTRLR*
Ga0126315_100204103	3300010038	Serpentine Soil	MATPEPVRLSGWRAQVHEIAWAAVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQPPPRRTLSRSAWPARLR*
Ga0126309_101951033	3300010039	Serpentine Soil	MGAAEPARPWPANGWRALVHEIAWAAVQRGGGTHADLEWLPAVVEARLAHRLDLLERAGATDAELAALREELVGWAVELLGEPRRSRRRRSLSRSAWPARLR*
Ga0126308_100593173	3300010040	Serpentine Soil	VHEIAWAAVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQPPPRRTLSRSAWPARLR*
Ga0126312_102917693	3300010041	Serpentine Soil	GWRAAVHEIAWTAVRRSGGDHADLEWLPAVVEEKLAARVDILERAGATGEELAAAYDDVIGWATELLSEQRSPRRSGALTRSAWPTRLR*
Ga0126311_106789472	3300010045	Serpentine Soil	AVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQPPPRRTLSRSAWPARLR*
Ga0126382_114939561	3300010047	Tropical Forest Soil	MATPEPAPVWNRWAAQVHEIAWAAVQRGGGEHADLEWLPAAVEGRLAHRVDLLERAGATEEELAAAGEELVEWAAGLLEKQPPPRRILSRSAWPARLR*
Ga0126376_110756472	3300010359	Tropical Forest Soil	MATPELAPVPNRWAAQVQEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVEWAVGLLKKEPPPRRVLSRSAWPARLR*
Ga0126377_100852332	3300010362	Tropical Forest Soil	MATPEPAPVSNRWAAQVHEIAWEAVQRGSGEHADLEWLPAVVEARLAHRVDLFERAGATEEELAAAREQMVEWAVELLRQEPPPRRILSRSAWPARLR*
Ga0126377_102008212	3300010362	Tropical Forest Soil	MATPEPAPVPNRWAAQVQEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVEWAVGLLKKEPPPRRILSRSAWPARLR*
Ga0138513_1000457821	3300011000	Soil	VQEIAWAAVRRGGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLGEQQRRKRGALSR*
Ga0138514_1000261272	3300011003	Soil	PWPGAACRAAVQEIAWAAVRRCGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLSEQPRRKRGALSRSAWPARLR*
Ga0157337_10235131	3300012483	Arabidopsis Rhizosphere	APSSWWSQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLGKQPPPRRALSRSAWPARLR*
Ga0157353_10183882	3300012496	Unplanted Soil	VHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAARVEMVEWAVGLLGKQPPPRRALSRSAWPARLR*
Ga0157330_10141491	3300012514	Soil	EHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLGKQPPPRRALSRSAWPARLR*
Ga0157299_100535352	3300012899	Soil	VHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR*
Ga0157288_100093721	3300012901	Soil	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLRKEPPPRRILSRSAWPARLR*
Ga0157288_100447872	3300012901	Soil	AQHFGMATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR*
Ga0157296_100297852	3300012905	Soil	EHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR*
Ga0157302_100129662	3300012915	Soil	AQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR*
Ga0162651_1000382572	3300012938	Soil	MGAAEPARLWAAAAWRAAVQEIAWAAVRRGGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLGEQPRRKRGALSRSAWPARLR*
Ga0162652_1000817772	3300012941	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERARATEEELAAAGEELVEWAIGLLRKEPPRAPPPLRPRAPGGR
Ga0126375_110919112	3300012948	Tropical Forest Soil	EIAWAAVQRGEGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAREEMVEWAVGQLGKQPPPRRTLSRSAWPARLR*
Ga0163162_120043611	3300013306	Switchgrass Rhizosphere	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDPLGRAGATEGGRAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR*
Ga0173480_100242081	3300015200	Soil	QVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLRKEPPPRRILSRSAWPARLR*
Ga0132258_102195424	3300015371	Arabidopsis Rhizosphere	VHEIAWAAVQRGGGEHSDLEWLPAVVEGRLPHRVDLLERAGATEEELAAAREEMVEWAVGLLGKQPPPRRALSRSAWPARLR*
Ga0132256_1000928533	3300015372	Arabidopsis Rhizosphere	VHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLGKQPPPRRALSRSAWPARLR*
Ga0132255_1029246452	3300015374	Arabidopsis Rhizosphere	ILSGAVFDIRRVAHHLGMATPEPALSGWWSQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRIDLLERAGATEEELAAAREEMVEWAVSLLGKQPPPKRTLSRSAWPTRLR*
Ga0184605_100453075	3300018027	Groundwater Sediment	VHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0184605_100782444	3300018027	Groundwater Sediment	MGAAEPARPWAGAAWRAVVHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEELAAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0184619_101018773	3300018061	Groundwater Sediment	RGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEELAAARDELVKWAAELLAEQRPRRKRGALSRSAWPVRLR
Ga0184619_102082012	3300018061	Groundwater Sediment	VQEIAWAAVRRGGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLGEQPRRKRGALSRSAWPARLR
Ga0184619_104116381	3300018061	Groundwater Sediment	MGAAEPARPRTGAWRAVVHEIAWAAVQRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0184624_100599532	3300018073	Groundwater Sediment	VHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVEWAVGLLRKEPPPRRTLSRSAWPARLR
Ga0173481_100167072	3300019356	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR
Ga0210382_104053102	3300021080	Groundwater Sediment	MGAAEPARPRTGAWRAVVHEIAWAAVQRGRGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0247795_10154952	3300022899	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSR
Ga0247791_10345941	3300023062	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPAR
Ga0247751_10954791	3300023069	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPR
Ga0247752_10269401	3300023071	Soil	PEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR
Ga0207687_111409322	3300025927	Miscanthus Rhizosphere	VHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR
Ga0207442_1004584	3300026815	Soil	MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTL
Ga0207637_10042381	3300027483	Soil	APVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR
Ga0209481_103257682	3300027880	Populus Rhizosphere	MATPEPAPVSNQWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEELAAAREEMVEWAVGLLRKEPPPRRTLSRSARPARLR
Ga0207428_100015436	3300027907	Populus Rhizosphere	MATPEPAFSGWWAQVQEIAWVAVQRGGGEHSDLEWLPAAVEGRLAHRVDLLERAGATEEELAAARGEMVEWAVGLLRQEPPPRRTLSRSARPARLR
Ga0207428_101362702	3300027907	Populus Rhizosphere	MATPESAFSGWRAQVHEIAWAAVQRGGGEHSDLEWLPAVVEGRLAHRVDLLERAGATDEELAAAREEMVEWAVGLLRQEPPPRRTLSRSAWPARLR
Ga0247749_10075732	3300027993	Soil	WWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTLSRSAWPARLR
Ga0307293_101052182	3300028711	Soil	MGAAEPARPRTGAWRAVVHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEELAAARDELVKWAAELLAEQRPRRKRGALSRSAWPVRLR
Ga0307319_100019317	3300028722	Soil	MRWMGAPEQARPWPGAAWRAAVHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATDEELAAARDELVEWAAGLLADQQPRRKRGALSRSAWPARLR
Ga0307319_100140266	3300028722	Soil	MGGAERARPWPGAAWRAAVQEIAWAAVRRGGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLSEQPRRKRGALSRSAWPARLR
Ga0307318_100763012	3300028744	Soil	MGAAEPARPRPGAAWRAAVHEIAWAAVRRGGGEHADLEWLPGVIEARLAHRVDLLERAGATEEEVAAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0307320_100950481	3300028771	Soil	AAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATDEELAAARDELVEWAAGLLADQQPRRKRGALSRSAWPARLR
Ga0307320_101776552	3300028771	Soil	MGGAEPARPWPGAAWRAAVQEIAWAAVRRGGGEHADLEWLPAVIEARLAHCIDLLERAGATEEEVAAVREELVEWAAELLSEQPRRKRGALSRSAWPARLR
Ga0307282_101001513	3300028784	Soil	MGVAEPARPWPGAAWRAVVHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLGRAGATEEELAAARDELVKWAAELLAEQRPRRKRGALSRSAWPVRLP
Ga0307305_101620713	3300028807	Soil	VHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEELAAARDELVKWAAELLAEQRPRRKRGALSRSAWPVRLR
Ga0307302_102468273	3300028814	Soil	VHEIAWAAVQRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDELVEWAAELLGEQQPRRKRGALSRSAWPARLR
Ga0307278_102397362	3300028878	Soil	MGGAEPARPWPGAAWRAAVQEIAWAAVRRGGGEHADLEWLPAVIEARLAHRIDLLERAGATEEEVAAVREELVEWAAELLSEQPRRKRGALSRSAWPARLR
Ga0307300_101393342	3300028880	Soil	MGAAEPARPRPGAAWRAAVHEIAWAAVRRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDELVEWAAELLREQQPRRKRGALSRSAWPARLR
Ga0307308_101262331	3300028884	Soil	VHEIAWAAVQRGGGEHADLEWLPAVIEARLAHRVDLLERAGATEEEVTAARDEMVEWAAELLGEQQPRRKRGALSRSAWP
Ga0307410_114006861	3300031852	Rhizosphere	MATPEPVRLSGWRAQVHEIAWAAVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQRPPRRTLSRSAW
Ga0307412_117241091	3300031911	Rhizosphere	VHEIAWAAVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQPPPRRTLSRSAWPARLR
Ga0308175_1002422692	3300031938	Soil	MATPEPAPLSGWWALVHDIAWAAVQRGGGEHADLEWLPAAVEARLAYRVDLLERAGATEEELAAAREELVEWAVGLVRRQPPPRRTLSRSAWPARLR
Ga0308176_104666011	3300031996	Soil	MATPEPAPLSGWWALVHDIAWAAVQRGGGEHADLEWLPAVVEARLAYRVDLLERAGATKEELAAAREELVEWAVGLVGRQPPPRRTLSRSAWPA
Ga0308176_126570431	3300031996	Soil	PQHFWMATPESVRLSGWRAQVHEIAWAAVRRGDGEHADLEWLPAVVEGRLAYRLDLLERAGATEEELAAAREELVEWAVGLLRKQPPPRRTLSRSAWPARLR
Ga0310902_113026491	3300032012	Soil	PVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATEEEFAEAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR
Ga0307471_1028027292	3300032180	Hardwood Forest Soil	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEGRLAHRVDLLERAGATVEELAAAREELVEWAVGLLRKEPPPRRTLSRSAWPARLR
Ga0247830_106018962	3300033551	Soil	MATPEPAPVSNRWAAQVHEIAWAAVQRGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGEELVEWAIGLLRKEPPPRRSLSRSAWPVRLR
Ga0334913_130215_268_534	3300034172	Sub-Biocrust Soil	MAAPEPARSPSAAGWRALVHEIAWAAVRRGGGDHADLEWLPAVVEARLAHRVDLLERAGATEQELAAARKELVAWAIELLAERRAPRRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences