Metagenome Family F103466

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103466
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	45 residues
Representative Sequence	GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS
Number of Associated Samples	93
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	95.05 %
% of genes from short scaffolds (< 2000 bps)	98.02 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (12.871 % of family members)
Environment Ontology (ENVO)	Unclassified (44.554 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.495 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.71% β-sheet: 28.57% Coil/Unstructured: 65.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04264	YceI	2.97
PF13620	CarboxypepD_reg	0.99
PF04191	PEMT	0.99
PF03022	MRJP	0.99
PF01590	GAF	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	91.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	90.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	90.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	90.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.99 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100985135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1399	Open in IMG/M
3300000955\|JGI1027J12803_102369103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300000956\|JGI10216J12902_110239193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1366	Open in IMG/M
3300003324\|soilH2_10161666	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1842	Open in IMG/M
3300004114\|Ga0062593_102976485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300004479\|Ga0062595_101751819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300004480\|Ga0062592_102378567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300005175\|Ga0066673_10228763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1071	Open in IMG/M
3300005177\|Ga0066690_10553171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	770	Open in IMG/M
3300005294\|Ga0065705_10815978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300005295\|Ga0065707_10800096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300005333\|Ga0070677_10683868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005334\|Ga0068869_100815781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300005336\|Ga0070680_100351836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1253	Open in IMG/M
3300005339\|Ga0070660_101757049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300005341\|Ga0070691_10819623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300005343\|Ga0070687_100539555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300005344\|Ga0070661_101420180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300005345\|Ga0070692_10369917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300005367\|Ga0070667_100192725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1806	Open in IMG/M
3300005440\|Ga0070705_101839518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300005459\|Ga0068867_100888778	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005459\|Ga0068867_101068299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300005466\|Ga0070685_10577289	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005539\|Ga0068853_101493164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300005543\|Ga0070672_100207301	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300005548\|Ga0070665_101728260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300005564\|Ga0070664_100042495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3836	Open in IMG/M
3300005719\|Ga0068861_100936810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300006237\|Ga0097621_100598105	All Organisms → cellular organisms → Bacteria → Proteobacteria	1008	Open in IMG/M
3300006755\|Ga0079222_11395004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300006844\|Ga0075428_102638504	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300006881\|Ga0068865_100393929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300006954\|Ga0079219_11664566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300009091\|Ga0102851_11543732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300009137\|Ga0066709_101246456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300009147\|Ga0114129_13160165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300009148\|Ga0105243_11653142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300009610\|Ga0105340_1358300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300010047\|Ga0126382_10186288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300010360\|Ga0126372_12533660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300011422\|Ga0137425_1090292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300011441\|Ga0137452_1152360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300011442\|Ga0137437_1120869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300012041\|Ga0137430_1218060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300012198\|Ga0137364_10793362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300012913\|Ga0157298_10354957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300012944\|Ga0137410_10785364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300012951\|Ga0164300_10123526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1174	Open in IMG/M
3300012955\|Ga0164298_10903959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300012957\|Ga0164303_10758062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300012987\|Ga0164307_10627416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300014301\|Ga0075323_1153588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300014325\|Ga0163163_10653197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300014325\|Ga0163163_11519311	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300014745\|Ga0157377_10603711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300015077\|Ga0173483_10086580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1277	Open in IMG/M
3300015245\|Ga0137409_10181344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1907	Open in IMG/M
3300015371\|Ga0132258_10431813	All Organisms → cellular organisms → Bacteria	3280	Open in IMG/M
3300015372\|Ga0132256_100426698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1430	Open in IMG/M
3300015374\|Ga0132255_100684513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1522	Open in IMG/M
3300015374\|Ga0132255_100743584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1459	Open in IMG/M
3300017792\|Ga0163161_12043894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300018051\|Ga0184620_10122905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300018061\|Ga0184619_10102878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1284	Open in IMG/M
3300018920\|Ga0190273_10796447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300019362\|Ga0173479_10359226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300021344\|Ga0193719_10151976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300021344\|Ga0193719_10224751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300025893\|Ga0207682_10498204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300025922\|Ga0207646_10174753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1940	Open in IMG/M
3300025930\|Ga0207701_10588478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300025930\|Ga0207701_11405679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300025940\|Ga0207691_10162638	All Organisms → cellular organisms → Bacteria → Proteobacteria	1957	Open in IMG/M
3300025940\|Ga0207691_11590732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300025960\|Ga0207651_10699719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300026035\|Ga0207703_11662184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300026067\|Ga0207678_11035756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300026095\|Ga0207676_11053378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300027775\|Ga0209177_10283817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300027880\|Ga0209481_10637732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300028379\|Ga0268266_10868819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300028381\|Ga0268264_11100971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300028381\|Ga0268264_11791589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300028889\|Ga0247827_11117207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300031152\|Ga0307501_10259527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300031538\|Ga0310888_11038976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300031547\|Ga0310887_10835399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300031740\|Ga0307468_101169852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300031820\|Ga0307473_10920956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300031847\|Ga0310907_10324871	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031854\|Ga0310904_11424087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300031943\|Ga0310885_10140820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1144	Open in IMG/M
3300031943\|Ga0310885_10344125	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300032003\|Ga0310897_10477259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300032013\|Ga0310906_10416125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300032017\|Ga0310899_10237761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300032179\|Ga0310889_10370291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300033550\|Ga0247829_11058427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300033551\|Ga0247830_10932365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300034090\|Ga0326723_0464285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.36%
Host-Associated	Host-Associated	35.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.44%
Plants	Host-Associated → Plants	35.64%
Aquatic	Environmental → Aquatic	7.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.86%
Sediment	Environmental → Aquatic → Sediment	6.93%
Roots	Host-Associated → Plants → Roots	2.97%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.89%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.99%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1009851351	3300000559	Soil	LRVKASFPVNLSDYSIRKPRYLGVGVKDTIQVEVAFAVIR*
JGI1027J12803_1023691031	3300000955	Soil	TVTGPVEVKKTGPGLRIKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVIFTATQ*
JGI10216J12902_1102391932	3300000956	Soil	VRVDASFFVNLPDFGIAKPRYLGVGVKDQVQVKVSFGSAE*
soilH2_101616663	3300003324	Sugarcane Root And Bulk Soil	GPAEIRQAGTGWRVRASFPINLPDYNIEKPRYLGVGVKDTVQVTVTFIARQS*
Ga0062593_1029764852	3300004114	Soil	GTLDVRQAGPALRVKASFPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR*
Ga0062595_1017518191	3300004479	Soil	QGTGLRVRASFAVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR*
Ga0062592_1023785672	3300004480	Soil	VRQAGPALRVKASFPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR*
Ga0066673_102287631	3300005175	Soil	VRPAGGGLRVKASFPVSLSDYGIPEPRYLGIGVRNTVQVEVAFAITQ*
Ga0066690_105531712	3300005177	Soil	GLRVKASFPVSLSDYGIPEPRYLGIGVRNNVQVEVAFAVTQ*
Ga0065705_108159781	3300005294	Switchgrass Rhizosphere	IRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0065707_108000961	3300005295	Switchgrass Rhizosphere	GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0070677_106838681	3300005333	Miscanthus Rhizosphere	TVTGSVEIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS*
Ga0068869_1008157812	3300005334	Miscanthus Rhizosphere	QAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS*
Ga0070680_1003518362	3300005336	Corn Rhizosphere	GTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0070660_1017570491	3300005339	Corn Rhizosphere	RESGTALRVKAVFPIALADYGIRQPRYLGVGVRDTVTVEVTFAVTN*
Ga0070691_108196231	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	DGGLRVKASFRLDLSDYGIAKPRYLGIGVTNTVRVEVAFDVSR*
Ga0070687_1005395551	3300005343	Switchgrass Rhizosphere	GWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTSTATQS*
Ga0070661_1014201801	3300005344	Corn Rhizosphere	RVTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFSVTR*
Ga0070692_103699172	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	AGLRVKASFPVNLHDYNIAEPRYLGVGVRDTVQVDVTFTTAQ*
Ga0070667_1001927253	3300005367	Switchgrass Rhizosphere	AGAGLRVRASFPVNLPDYNIAEPRYLGVGVKDTVQVDVTFTTTQS*
Ga0070705_1018395181	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GLRVKASFPVELPAYGIDKPRYLGIGVKDIVRVEAAFAVTH*
Ga0068867_1008887781	3300005459	Miscanthus Rhizosphere	AEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0068867_1010682991	3300005459	Miscanthus Rhizosphere	VRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR*
Ga0070685_105772892	3300005466	Switchgrass Rhizosphere	TGTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR*
Ga0068853_1014931642	3300005539	Corn Rhizosphere	TDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR*
Ga0070672_1002073012	3300005543	Miscanthus Rhizosphere	KTVTGTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR*
Ga0070665_1017282602	3300005548	Switchgrass Rhizosphere	ASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR*
Ga0070664_1000424951	3300005564	Corn Rhizosphere	SFPVNLPDYNIAEPRYLGVGVKDTVQVDVTFTTTQS*
Ga0068861_1009368102	3300005719	Switchgrass Rhizosphere	ASFPVHLPEYNIAEPRYLGVGVKDTVQVDVTFITQ*
Ga0097621_1005981053	3300006237	Miscanthus Rhizosphere	FRLDLPDYGIAKPRYLGVGVTNTVQVEVAFDVAR*
Ga0079222_113950042	3300006755	Agricultural Soil	FPVNLPDYNIAEPRYLGVGVKNTVQVDVTFTTTQ*
Ga0075428_1026385042	3300006844	Populus Rhizosphere	GPVEIRQAGAGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0068865_1003939292	3300006881	Miscanthus Rhizosphere	VDVRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQVEVAFAVTR*
Ga0079219_116645662	3300006954	Agricultural Soil	PVEIRKAGSGMRVRASFPVNLPDYNIPEPRYLGVGVKNTVQVDVTFTTTQ*
Ga0102851_115437321	3300009091	Freshwater Wetlands	QSGAGLRVKASFLVTLADFSIRKPRYLGIGVKDTVQVDVAFAVTR*
Ga0066709_1012464561	3300009137	Grasslands Soil	GLRVKASFPVNLSDYGIRAPRYLGIGVRDTVQVEAAFAVSR*
Ga0114129_131601652	3300009147	Populus Rhizosphere	EIRQAGTAWRVRASFPVSLPDYNIEKPRYLGVGVRDTVQVSVTFTATQS*
Ga0105243_116531421	3300009148	Miscanthus Rhizosphere	TGPVEIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS*
Ga0105340_13583002	3300009610	Soil	VKASFPVRLADYAISEPRYLGVGVKDTVEVNVTFSVAQGGQQ*
Ga0126382_101862881	3300010047	Tropical Forest Soil	ASFPVNLPDYNIDKPRYLGVGVKDTVQVLVTFTATQS*
Ga0126372_125336602	3300010360	Tropical Forest Soil	SFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQT*
Ga0137425_10902922	3300011422	Soil	VKASFGLNVSDYGIAKPRYLGVGVANTVQVEVAFDVSR*
Ga0137452_11523602	3300011441	Soil	AVDVREAGTGLRVKASFPVDLSDYSIRKPRYLGIGVKDTVQVEVAFAVSR*
Ga0137437_11208693	3300011442	Soil	RVKASFRLDVSDYGIAPPRYLGIGVTNTVQVEVAFDVSR*
Ga0137430_12180602	3300012041	Soil	GGGLRVTASFRLDLADYGIARPSYLGIGVTNTVQVEVAFDVSR*
Ga0137364_107933621	3300012198	Vadose Zone Soil	IKTSFPVNLPDYNIAEPRYLGVGVKNIVHVEVTFTTSQ*
Ga0157298_103549572	3300012913	Soil	LRVQASFPVNLSDYSIRKPRYLGIGVKDIVQVEVAFAVTR*
Ga0137410_107853642	3300012944	Vadose Zone Soil	RVKTSFPVNLPDYNIAEPRYLGVGVKNIVQVEVTFSATQ*
Ga0164300_101235262	3300012951	Soil	GLHVKASFPVDLSDYAIAKPRYLGVGVKDIVQVEVAFAVTR*
Ga0164298_109039592	3300012955	Soil	KRSVDVRAQRTRLRVRASFPVDLPDYGIGQPRYLGVDVKSTVQVEVAFAVTR*
Ga0164303_107580621	3300012957	Soil	DVRQVGAALRVKASFPLNLTDYSIRQPRYLGVGVKDTVTVEVAFAVTR*
Ga0164307_106274161	3300012987	Soil	DVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR*
Ga0075323_11535881	3300014301	Natural And Restored Wetlands	KGGAGLRVKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVTFTTTQ*
Ga0163163_106531972	3300014325	Switchgrass Rhizosphere	EVHPAGAGHRVKASFPVDLPAYAIPKPRYLGVGVKDTVHVEVAFEVSR*
Ga0163163_115193111	3300014325	Switchgrass Rhizosphere	IRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTVTVTQS*
Ga0157377_106037111	3300014745	Miscanthus Rhizosphere	RASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS*
Ga0173483_100865802	3300015077	Soil	TKPVTGFVDVRPAGGGRRVKASFRLDLTDYGIAKPRYLGIGVTNTVQVEVAFDVSR*
Ga0137409_101813443	3300015245	Vadose Zone Soil	AGGGLQIKASFPITLSDYSISAPRYMGVGVKNTVQVQVAFAVTQ*
Ga0132258_104318134	3300015371	Arabidopsis Rhizosphere	VRASFPVTLADYSIRKPRYLGVGVKDTVTVEVAFAVTR*
Ga0132256_1004266982	3300015372	Arabidopsis Rhizosphere	KASFPVNLADYSIRKPRYLGVGVKDTVTVEVAFAVTR*
Ga0132255_1006845133	3300015374	Arabidopsis Rhizosphere	RQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS*
Ga0132255_1007435841	3300015374	Arabidopsis Rhizosphere	FPVLLSDYGIAKPRYLGVGVKDTVQVEVAFVVSR*
Ga0163161_120438941	3300017792	Switchgrass Rhizosphere	GAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS
Ga0184620_101229051	3300018051	Groundwater Sediment	VTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFAVTR
Ga0184619_101028781	3300018061	Groundwater Sediment	TGAVDVRHAGAGLRVTASFPVNLSDYNIRKPRYLGVGVKDIVQVEVAFAVTR
Ga0190273_107964472	3300018920	Soil	KASFPVNLSDYNISEPRYLGVGVKNTVQVEVAFTVTQ
Ga0173479_103592261	3300019362	Soil	GAGHRVKASFPVDLPGYAIPKPRYLGVGVKDTVHVEVAFEVSR
Ga0193719_101519762	3300021344	Soil	LHVTASFPVNLPDYSIRKPRYLGVGVKDIVQVEVAFSVTR
Ga0193719_102247511	3300021344	Soil	VTGAVDVRQEGAALRVKASFPVLLSDYGIPKPRYLGVGVKDTVQVELVFAVSR
Ga0207682_104982041	3300025893	Miscanthus Rhizosphere	EIRQAGAAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS
Ga0207646_101747533	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RVRASFPVNLPDYNIAEPRYLGVGVKNTVQVDVTFTTTS
Ga0207701_105884782	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SFPLNLPDYNIDKPRYLGVGVKDTVQVSVTFTATQS
Ga0207701_114056792	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	AAGLRVNAAFPINLSDYGVSEPRYMGVGVKNTVQVQVTFTVTQ
Ga0207691_101626382	3300025940	Miscanthus Rhizosphere	LRSVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR
Ga0207691_115907321	3300025940	Miscanthus Rhizosphere	KASFRLKLSDYNIPEPRYLGVGVKDTVQVEVTFTASTP
Ga0207651_106997191	3300025960	Switchgrass Rhizosphere	AGTGWRVRASFPLNLPDYNIDKPRYLGVGVKDTVQVSVTVTVTQS
Ga0207703_116621842	3300026035	Switchgrass Rhizosphere	ASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR
Ga0207678_110357562	3300026067	Corn Rhizosphere	GVRKTVKGSVDVRAQGTGLRVRASFPVDLPDYGIGKPRYLGVGVKDIVQVEVAFAVTR
Ga0207676_110533782	3300026095	Switchgrass Rhizosphere	GTIDVRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR
Ga0209177_102838172	3300027775	Agricultural Soil	PVEIRKAGSGMRVRASFPVNLPDYNIPEPRYLGVGVKNTVQVDVTFTTTQ
Ga0209481_106377321	3300027880	Populus Rhizosphere	EIRQVGAAWRVRASFPVNLPDYNIEKPRYLGVGVKDTVQVSVTFTATQS
Ga0268266_108688191	3300028379	Switchgrass Rhizosphere	GVTKTVTGTIDVRQAGTDVRVNASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR
Ga0268264_111009711	3300028381	Switchgrass Rhizosphere	VEIRQAGTAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS
Ga0268264_117915892	3300028381	Switchgrass Rhizosphere	PVEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVDVTFITQ
Ga0247827_111172071	3300028889	Soil	AGLRVKASFPVELADYSIRKPRYLGIGVRDTVQVEVVFALGRETRS
Ga0307501_102595272	3300031152	Soil	EVKKTGSGLRVKASFPVNLPDYNIPEPRYLGVGVKNTVQVEVTFTATQ
Ga0310888_110389762	3300031538	Soil	ASFPVDLTSYGIRKPRYLGVGVKDIVQVEVAFVVSR
Ga0310887_108353991	3300031547	Soil	VKASFPVDLATYRIRKPRYLGIGVKDIVQVEVAFAVSR
Ga0307468_1011698521	3300031740	Hardwood Forest Soil	KASFPLNLSDFGIREPRYLGVGVTNTVQVQVTFAVTH
Ga0307473_109209562	3300031820	Hardwood Forest Soil	KTVTGPVEIRQAGTGWRVRASFPVNLPDYNIDKPRYLGVGVKDTVQVSVTFTTTQS
Ga0310907_103248712	3300031847	Soil	VKASFPVELADYGIRKPRYLGIGVRDSVQVEVVFALGRETRS
Ga0310904_114240871	3300031854	Soil	VRQAGTDVRVKASFPVTLPDYSIRKPRYLGVGVKDTVTVEVAFAMTR
Ga0310885_101408201	3300031943	Soil	ASFPVDLPAYGIGKPRYLGVGVKDTVQIEVAFAVTR
Ga0310885_103441251	3300031943	Soil	LRVKASFPVQLSDYSIRPPRYLGVGVKDIVQVEVAFAVSR
Ga0310897_104772591	3300032003	Soil	GGLRVQASFRLDLSDYNIAKPRYLGIGVTNTVQVEVAFDISR
Ga0310906_104161251	3300032013	Soil	GLRVRASFPVDLPDYGIGKPRYLGVGVKDTVQIEVAFAVTR
Ga0310899_102377612	3300032017	Soil	TAWRVRASFPVNLPDYNIDKPRYLGVGVKDMVQVSVTFTATQS
Ga0310889_103702911	3300032179	Soil	SVDVRAQGTGLHVKASFPVDLSDYAIAKPRYLGVGVKDIVQVEVAFAVTR
Ga0247829_110584272	3300033550	Soil	SQTVTGAVDVRQAGGGLRVKASFPVNLPDYRIRQPRYLGIGVTDTVRVEVVFAVSR
Ga0247830_109323652	3300033551	Soil	GPDVRIDASFPVNLPEFGIPEPRYLGVGVKDQVQVKVKFGSAR
Ga0326723_0464285_447_578	3300034090	Peat Soil	GSGLRVKASFPVNLSDYNIPEPRYLGVGVKNTVQVEVTFTATQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103466

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences