Metagenome Family F103465

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103465
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	76 residues
Representative Sequence	ESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ
Number of Associated Samples	88
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	97.03 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.010 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.802 % of family members)
Environment Ontology (ENVO)	Unclassified (40.594 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.337 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.85% β-sheet: 35.58% Coil/Unstructured: 35.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01569	PAP2	33.66
PF00920	ILVD_EDD	7.92
PF01450	IlvC	0.99
PF13561	adh_short_C2	0.99
PF07991	IlvN	0.99
PF13710	ACT_5	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	15.84
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	3.96
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.97 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	81.19 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	81.19 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.98 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	81.19 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.98 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	81.19 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.98 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	81.19 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1.98 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.99 %
Unclassified	root	N/A	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10453133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300004114\|Ga0062593_102315981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300004156\|Ga0062589_100023636	All Organisms → cellular organisms → Bacteria	2978	Open in IMG/M
3300004463\|Ga0063356_105523879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300004643\|Ga0062591_100092849	All Organisms → cellular organisms → Bacteria	1921	Open in IMG/M
3300005093\|Ga0062594_100138207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1564	Open in IMG/M
3300005093\|Ga0062594_101446839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300005293\|Ga0065715_10253035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300005328\|Ga0070676_10191322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1336	Open in IMG/M
3300005329\|Ga0070683_101583116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300005331\|Ga0070670_101339712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300005332\|Ga0066388_103320195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300005333\|Ga0070677_10385584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300005336\|Ga0070680_100328984	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300005344\|Ga0070661_100436192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300005355\|Ga0070671_100021857	All Organisms → cellular organisms → Bacteria	5225	Open in IMG/M
3300005364\|Ga0070673_100295066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1425	Open in IMG/M
3300005364\|Ga0070673_100587316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300005457\|Ga0070662_100016979	All Organisms → cellular organisms → Bacteria	4895	Open in IMG/M
3300005467\|Ga0070706_100889759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300005471\|Ga0070698_101372654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300005518\|Ga0070699_101549566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005536\|Ga0070697_101843720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300005546\|Ga0070696_100093550	All Organisms → cellular organisms → Bacteria	2144	Open in IMG/M
3300005618\|Ga0068864_100215777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1769	Open in IMG/M
3300005618\|Ga0068864_100398009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1308	Open in IMG/M
3300005719\|Ga0068861_101945150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300006049\|Ga0075417_10231766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300006237\|Ga0097621_100619214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	991	Open in IMG/M
3300006358\|Ga0068871_101644341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300006844\|Ga0075428_102136805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300006847\|Ga0075431_102002196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300006852\|Ga0075433_10205640	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300006852\|Ga0075433_10543626	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300006852\|Ga0075433_10717611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300006852\|Ga0075433_10736735	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300006904\|Ga0075424_101204554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300006969\|Ga0075419_10710659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300006969\|Ga0075419_11475453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300007076\|Ga0075435_101183744	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300009012\|Ga0066710_104598808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300009094\|Ga0111539_10083244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3763	Open in IMG/M
3300009094\|Ga0111539_10517383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1390	Open in IMG/M
3300009094\|Ga0111539_12158452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300009100\|Ga0075418_12747302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300009137\|Ga0066709_101415679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1010	Open in IMG/M
3300009137\|Ga0066709_104057247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300009148\|Ga0105243_11405138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300009156\|Ga0111538_10734681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1250	Open in IMG/M
3300009162\|Ga0075423_10494348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300009176\|Ga0105242_11242454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300010359\|Ga0126376_10814179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300010397\|Ga0134124_10046660	All Organisms → cellular organisms → Bacteria	3633	Open in IMG/M
3300010400\|Ga0134122_12441421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300010403\|Ga0134123_11734501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300011417\|Ga0137326_1081199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300011423\|Ga0137436_1015586	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300011428\|Ga0137456_1200313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300012160\|Ga0137349_1021822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300012208\|Ga0137376_10248246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1543	Open in IMG/M
3300012208\|Ga0137376_11473725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300012929\|Ga0137404_11984358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300012944\|Ga0137410_10881582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300012986\|Ga0164304_10809452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300014262\|Ga0075301_1023903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300014325\|Ga0163163_12477872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300015241\|Ga0137418_11255370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300018075\|Ga0184632_10465321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018084\|Ga0184629_10062848	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300018433\|Ga0066667_12136292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300020005\|Ga0193697_1084648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300021445\|Ga0182009_10254542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300025905\|Ga0207685_10074306	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300025912\|Ga0207707_11326355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300025926\|Ga0207659_10898360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300025933\|Ga0207706_11692051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300025934\|Ga0207686_10328807	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300025936\|Ga0207670_10802866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300025944\|Ga0207661_11904915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300025945\|Ga0207679_10523898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300025960\|Ga0207651_11203175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300025960\|Ga0207651_12024448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300025986\|Ga0207658_11219720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300026095\|Ga0207676_10476357	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300026095\|Ga0207676_11396848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300026118\|Ga0207675_100598780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1105	Open in IMG/M
3300027835\|Ga0209515_10382004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300027873\|Ga0209814_10361021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300027880\|Ga0209481_10582884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300027907\|Ga0207428_10534320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300028381\|Ga0268264_10403272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1314	Open in IMG/M
3300028792\|Ga0307504_10227228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300031720\|Ga0307469_12181686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300031740\|Ga0307468_102167418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300032122\|Ga0310895_10251413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300032180\|Ga0307471_103996565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300032211\|Ga0310896_10663673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300033433\|Ga0326726_10471254	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300034147\|Ga0364925_0037799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1606	Open in IMG/M
3300034149\|Ga0364929_0250748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.50%
Host-Associated	Host-Associated	49.50%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.50%
Terrestrial	Environmental → Terrestrial	43.56%
Aquatic	Environmental → Aquatic	6.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.91%
Sediment	Environmental → Aquatic → Sediment	5.94%
Roots	Host-Associated → Plants → Roots	2.97%
Floodplain	Environmental → Terrestrial → Floodplain	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Peat	Environmental → Terrestrial → Peat	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.85%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.98%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.99%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.95%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_104531331	3300000891	Soil	GFAWQLGAGVEYRLWQFVYGVADARITHVNEKHLRGAGAEIAGSFFTRHVDFGVALRLPNR*
Ga0062593_1023159811	3300004114	Soil	QYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPGR*
Ga0062589_1000236361	3300004156	Soil	PVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0063356_1055238792	3300004463	Arabidopsis Thaliana Rhizosphere	QRGGFAWQLGAGIEYHLWQFVYGAADARITRVTEKHLRAAGAEVAGSFFTRHLDFGVTLRLPSR*
Ga0062591_1000928493	3300004643	Soil	QEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0062594_1001382073	3300005093	Soil	ESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0062594_1014468392	3300005093	Soil	ESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0065715_102530351	3300005293	Miscanthus Rhizosphere	APVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGLEYHFWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR*
Ga0070676_101913223	3300005328	Miscanthus Rhizosphere	PHVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0070683_1015831162	3300005329	Corn Rhizosphere	FRNVHQEQYQYGGVAWQAGAGLEYHLWQFLYAVGDARITRVSEHHLRGAGIDIAGSFFTKHLDFGIGLRIP*
Ga0070670_1013397122	3300005331	Switchgrass Rhizosphere	HVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0066388_1033201952	3300005332	Tropical Forest Soil	HQEQYQRGGFAWQLGAGAEYHLWEFVYGVADARITRVTENHLRAAGAEIAGSFFTRHVDFGIALRVPAR*
Ga0070677_103855841	3300005333	Miscanthus Rhizosphere	RGGLGISTPHVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKRNRADGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0070680_1003289843	3300005336	Corn Rhizosphere	HVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0070661_1004361921	3300005344	Corn Rhizosphere	TFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0070671_1000218571	3300005355	Switchgrass Rhizosphere	RGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPGR*
Ga0070673_1002950663	3300005364	Switchgrass Rhizosphere	TFRNVHQEQYQRGGFAWQLGAGLEYHFWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR*
Ga0070673_1005873162	3300005364	Switchgrass Rhizosphere	TPHMESTFRNVHQEQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPGR*
Ga0070662_1000169796	3300005457	Corn Rhizosphere	RGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0070706_1008897591	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	NVHQEQYQYGGVAWQVGAGLEYRLWQFAYAVADARITRVTEKHLRGAGSEIAGTFFTQHLDFGVALRLPNR*
Ga0070698_1013726542	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	QYQYGGVAWQVGAGLEYRLWQFAYAVADARITRVTEKHLRGAGSEIAGTFFTQHLDFGVALRLPNR*
Ga0070699_1015495662	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	CTGVVRGGLGISTPHVESTFRNVHQEQYQYGGVAWQVGAGLEYRLWQFAYAVADARITRVTEKHLRGAGSEIAGTFFTQHLDFGVALRLPNR*
Ga0070697_1018437201	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VHQEQYQRGGFAWQLGGGLEYHVWQFLYGIADARITRVAEHHLRGAGVEIAGSFFTRHVDFGVALRLPNR*
Ga0070696_1000935501	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TPHVESTFRNTHQEQYQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNERHLRAAAADISGAFFTRHVDFGIGLRLPD*
Ga0068864_1002157773	3300005618	Switchgrass Rhizosphere	VESTFRNVHQEQYQRGGFAWQLGAGLEYHFWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR*
Ga0068864_1003980093	3300005618	Switchgrass Rhizosphere	EQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGTFFTRHVDFGVALRFPGR*
Ga0068861_1019451502	3300005719	Switchgrass Rhizosphere	GGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0075417_102317662	3300006049	Populus Rhizosphere	STFRNVHQEQYQRGGFAWQLGAGVEYRVWQFLYGVADARITRVSEKHLRAAGAEIAGSFFTRHVDFGVALRLPAP*
Ga0097621_1006192141	3300006237	Miscanthus Rhizosphere	CTAVVRGGAGISTPHMESTFRNVHQEQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPGR*
Ga0068871_1016443412	3300006358	Miscanthus Rhizosphere	GFAWQLGAGIEYHLWQFVYGVADARITRVAEKHLRAAGAEIAGAFFTRHVDFGVTLRLPER*
Ga0075428_1021368052	3300006844	Populus Rhizosphere	PHVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPR*
Ga0075431_1020021962	3300006847	Populus Rhizosphere	VESTFRNTHQEQYQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNEKRLRAAAADISGAFFTRHVDFGIGLRLPD*
Ga0075433_102056403	3300006852	Populus Rhizosphere	QEQYQRGGFAWQLGAGVEYHLWQFVFAVADGRITRVTEKHLRAAGAEIEGSFFTRHVDFGVALRLPE*
Ga0075433_105436262	3300006852	Populus Rhizosphere	TAVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGLEYHVWQFVYGIADARITRVTEQHLRGAGAEIAGSFFTRHVDFGVALRLPAR*
Ga0075433_107176112	3300006852	Populus Rhizosphere	TFRNVHQEQYQRGGLAWQLGAGLEYHLWEFVYGVADARITRVTEKRLRAAGADITGSFFTRHVDFGVALRVPPR*
Ga0075433_107367351	3300006852	Populus Rhizosphere	PHVESTFLNVHQEQYQYGGPAWQAGAGLEYRVWQFVYGVADARITRVTEKHLRGAGSEIAGTFFTRHLDFGVALRLPNR*
Ga0075424_1012045541	3300006904	Populus Rhizosphere	VHQEQYQRGGFAWQLGGGVEYHLWQFVYGVADARITRVTEDHLRGAGVEIAGSFFTRHVDFGVALRLPGR*
Ga0075419_107106592	3300006969	Populus Rhizosphere	AWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPR*
Ga0075419_114754531	3300006969	Populus Rhizosphere	YQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNEKRLRAAAADISGAFFTRHVDFGIGLRLPD*
Ga0075435_1011837441	3300007076	Populus Rhizosphere	AVLRGGAGISTPHVESTFRNVHQEQYQRGGFAWQLGGGVEYHLWQFVYGVADARITRVSENHLRGAGVEIAGSFFTRHVDFGVALRLPGR*
Ga0066710_1045988081	3300009012	Grasslands Soil	GAGISTPHVESTFRNAHQEQYQYGGPAWQAGAGLEYHLWQFVYGVADARITRVSEKHLRGAGVDIAGSFFTRHVDFGVALRLPAR
Ga0111539_100832441	3300009094	Populus Rhizosphere	ISTPHVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0111539_105173833	3300009094	Populus Rhizosphere	GVGISTPHVESTFRNVHQEQYQRGGFAWQLGAGIEYHLWQFVYGIADARITRVTEKHLRAAGADIAGSFFTRHADFGVMLRLPTQ*
Ga0111539_121584521	3300009094	Populus Rhizosphere	ISTPHVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPR*
Ga0075418_127473021	3300009100	Populus Rhizosphere	GGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ*
Ga0066709_1014156791	3300009137	Grasslands Soil	PHVESTFRNAHQEQYQYGGPAWQAGAGLEYHLWQFVYGVADARITRVSEKHLRGAGVDLAGSFFTRHVDFGVALRAPSR*
Ga0066709_1040572472	3300009137	Grasslands Soil	AGGTRPHVESTVNLGHGDVHQEQYQYGGIAWQLGTGVEVKVGWRLHVLADARITRVTEKHLRAAGAELAGTFFTRHVDFGLGLQLPD*
Ga0105243_114051382	3300009148	Miscanthus Rhizosphere	EQYQRGGFAWQLGAGMEFHLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPNR*
Ga0111538_107346811	3300009156	Populus Rhizosphere	RCTPVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ*
Ga0075423_104943481	3300009162	Populus Rhizosphere	NVHQEQYQYGGRAWQLGAGLEYRLWQFVYAIGDARITRVAEKHLRGAGAELSGTFFTRHIDFGVALRLPAR*
Ga0105242_112424542	3300009176	Miscanthus Rhizosphere	HQEQYQRGGFAWQLGAGMEFHLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPNR*
Ga0126376_108141791	3300010359	Tropical Forest Soil	TIALRAGAGISIPHVESTFRGVHQEQYQYGGVAWQVGAGLEYRVWQFAWAVADAKLTRVNEEHLRGADVEIAGPFFVRHVDFGVAFRFPPTH*
Ga0134124_100466604	3300010397	Terrestrial Soil	TFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR*
Ga0134122_124414211	3300010400	Terrestrial Soil	RAAVVRGGAGISTPDVESTFRNVHQEQYQRGGFAWQLGSGMEFQLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPNR*
Ga0134123_117345011	3300010403	Terrestrial Soil	RGGFAWQLGAGLEYHFWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR*
Ga0137326_10811992	3300011417	Soil	VVRGGAGISTPHVASTFRSIHQEQYQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNEKHLRAAAAEISGAFFTRHVDFGIGLRLSD*
Ga0137436_10155863	3300011423	Soil	CAFVVRGGAGISTPHVESTFRSIHQEQYQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNEKHLRAAAAEISGAFFTRHVDFGIGLRLSD*
Ga0137456_12003131	3300011428	Soil	QYGGIAWQAGAGVEYRIWRLLSALADVRVTRVSETHLRGGGAEIAGAFLTRHVDFGIGLRLPD*
Ga0137349_10218221	3300012160	Soil	RAIQEAERRRYQYGGTAVRGCPGAAFRNWQFVYGIADARITRVNEKHLRAAAAEISGAFFTRHVDFGIGLRLSD*
Ga0137376_102482461	3300012208	Vadose Zone Soil	GVDVRGGLGVSTPHVESTFRNVHQEQYQYGGIAWQAGAGLEYRLWQFVYAVGDARITRVSEKHLRGAGIDIAGSFFSRHVDFGVALRVPK*
Ga0137376_114737252	3300012208	Vadose Zone Soil	IRGGAGISTPHVESTFANVHQEQYQYGGPAWQLGAGLEYHLWQFVYAVGDARITRVTEKHLRGAGAELAGTFFTRHVDFGVALRLPNR*
Ga0137404_119843581	3300012929	Vadose Zone Soil	TFRNIRQEQYQRAGFAWQVGAGIEYHVWTFLYAVADARITHVTDHDLRAAGADIEGSFTTRHLDFGIALRP*
Ga0137410_108815821	3300012944	Vadose Zone Soil	ISTPHVESTFRDVHQEQYQRGGFAWQLGAGLEYHLWQFVYGVADARITRVTEKHLRSAGAEIAGSFFTRHVDFGVALRLPQ*
Ga0164304_108094522	3300012986	Soil	RNVHQEQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPSR*
Ga0075301_10239032	3300014262	Natural And Restored Wetlands	PHVESTFRNVHQEQYQRGGFAWQLGAGVEYHLWQFLYGVADGRITRVTEKHLRAAGAEIEGSFFTRHVDFGVALRLPE*
Ga0163163_124778722	3300014325	Switchgrass Rhizosphere	VVRGGLGISTPHVETTFANVHQEQYQYGGPAWQLGAGLEYRLWQFVYAVGDARITRVTEKHLRGAGAELSGTFFTRHLDFGVALRLPAR*
Ga0137418_112553701	3300015241	Vadose Zone Soil	AWQLGAGLEVHLWQFAYGIADARITRVTENHLRAAGAEISGSFFTRHVDFGVALRLPQ*
Ga0184632_104653211	3300018075	Groundwater Sediment	RGGFAWQVGAGAEVRIWQFVYGIADARVTRVNEKHLRAAGADIAGAFFTRHVDFGIGLRLPQ
Ga0184629_100628481	3300018084	Groundwater Sediment	TFRNTHQEQYQYGGFAWQVGAGAEFRLWQFVYGIADARITRVNEKHLHAAAADISGAFFTRHVDFGIGLRLPD
Ga0066667_121362921	3300018433	Grasslands Soil	ACQLGAGLEFHVWQFVYGIGDARITRVTERHLRGAGVDIGGSFFTRHVDFGVALRLPNR
Ga0193697_10846481	3300020005	Soil	PHVESTFRNVHQEQYQRGGFAWQLGGGLEFHVWQFVYGVADARITRVTEKHLRGAGAEIAGSFFTRHVDFGIALRLPNR
Ga0182009_102545421	3300021445	Soil	ETTFANVHQEQYQYGGPAWQLGAGLEYRLWQFVYAVGDARITRVTEKHLRGAGAKLSGAFFTRHLDFGVALRLPAR
Ga0207685_100743062	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VHQEQYQYGGVAWQVGAGLEYRVWQFAWAVADAKLTRVNETHLRGADVEIAGPFFVRHVDFGVAFRFPPH
Ga0207645_100874463	3300025907	Miscanthus Rhizosphere	CAGRCTPVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ
Ga0207707_113263551	3300025912	Corn Rhizosphere	TPHVESTFRGVHQEQYQRGGFAWQLGAGLEYHLWQFVYGVGDARITHVTEHHLRGAGAEMSGTFFTRHVDFGITLRLPD
Ga0207659_108983601	3300025926	Miscanthus Rhizosphere	TPHVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ
Ga0207706_116920512	3300025933	Corn Rhizosphere	MSPTERPLTIGLVGCGAISTQHVETTFANVHQEQYQYGGPAWQLGAGLEYRLWQFVYAVGDARITRVTEKQLRGAGAELSGTFFTRHLDFGVALRLPAR
Ga0207686_103288071	3300025934	Miscanthus Rhizosphere	GFAWQLGAGVEYRLWQFVYGVVDARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPE
Ga0207670_108028661	3300025936	Switchgrass Rhizosphere	NVHQEQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGTFFTRHVDFGVALRFPGR
Ga0207661_119049151	3300025944	Corn Rhizosphere	VRGGLGISTPRVESTFRNVHQEQYQYGGVAWQAGAGLEYHLWQFLYAVGDARITRVSEHHLRGAGIDIAGSFFTKHLDFGIGLRIP
Ga0207679_105238981	3300025945	Corn Rhizosphere	GRCTPVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGFEYHLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPAP
Ga0207651_112031751	3300025960	Switchgrass Rhizosphere	TPHMESTFRNVHQEQYQRGGFAWQLGAGVEYHLWQFVYGVADARITRVTENHLRGAGVEIAGSFFTRHVDVGVALRLPGR
Ga0207651_120244481	3300025960	Switchgrass Rhizosphere	RGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGFEYHLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPAP
Ga0207658_112197201	3300025986	Switchgrass Rhizosphere	RCAAVVRGGLGISTPHVETTFANVHQEQYQYGGPAWQLGAGLEYRLWQFVYAVGDARITRVTEKHLRGAGAELSGTFFTRHLDFGVALRLPAR
Ga0207676_104763571	3300026095	Switchgrass Rhizosphere	PVVRGGLGISTPHVESTFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ
Ga0207676_113968481	3300026095	Switchgrass Rhizosphere	YQRGGFAWQLGAGFEYHLWQFVYGVADARITRVTEKHLRAAGADIAGSFFTRHVDFGVALRLPAP
Ga0207675_1005987801	3300026118	Switchgrass Rhizosphere	TFRNVHQEQYQRGGFAWQVGAGVEYHLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPPQ
Ga0209515_103820041	3300027835	Groundwater	ISTPHVESTFRNEHQEQYQYGGIAWQAGAGLEYRLWQFVYGVADARITRVSEKHLRSAGAEIAGAFFSRHVNFGVALRVGR
Ga0209814_103610211	3300027873	Populus Rhizosphere	AGISTPHVESTFRNVHQEQYQRGGFAWQLGAGVEYRVWQFLYGVADARITRVSEKHLRAAGAEIAGSFFTRHVDFGVALRLPAP
Ga0209481_105828842	3300027880	Populus Rhizosphere	VRGGLGISTPHVESTFRNVHQEQYQRGGFAWQLGAGVEYHLWQFVFAVADGRITRVTEKHLRAAGAEIEGSFFTRHVDFGVALRLPE
Ga0207428_105343201	3300027907	Populus Rhizosphere	ISTPHVESTFRNVHQEQYQRGGFAWQLGAGIEYHLWQFVYGIADARITRVTEKHLRAAGADIAGSFFTRHADFGVMLRLPTQ
Ga0268264_104032721	3300028381	Switchgrass Rhizosphere	GGFAWQRGAGLEYHFWQFVYGVADARITRVSEKHLRAAGAEIAGSFVTRHVDFGVALRLPAR
Ga0307504_102272282	3300028792	Soil	AWQAGAGLEYRLWQFVYGVADARITRVSEKHLRGAGVEIAGPFFTRHIDFGVALRVGR
Ga0307469_121816861	3300031720	Hardwood Forest Soil	HQEQYQYGGPAWQAGAGFEYHVWQFVYGIADARITRVTEKHLRAAGAEISGSFFTRHLDFGVALRLPNR
Ga0307468_1021674182	3300031740	Hardwood Forest Soil	AGVSTPHVESTFRNVHQEQYQRGGFAWQLGAGLEYHVWQFVYGVADARITRVTEKHLRGAGAEIAGSFFTRHVDFGVALRLPQ
Ga0310895_102514132	3300032122	Soil	QRGGFAWQLGAGIEYRLWQFVYGVADARITRVTEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ
Ga0307471_1039965651	3300032180	Hardwood Forest Soil	AWQLGAGVEYRVWQFVYGVADARITRVSEKHLRAAGAEIAGSFFTRHVDFGVALRLPAQ
Ga0310896_106636731	3300032211	Soil	QEQYQRGGFAWQLGAGIEYHLWQFVYGVADARITRVAEKHLRAAGAEIAGAFFTRHVDFGVTLRLPER
Ga0326726_104712541	3300033433	Peat Soil	ESTFRNVHQEQYQYGGIAWQAGAGVEYHVWQFVYAIADARITRVSEKHLRGAGVEIAGPFFTRHVDFGVALRLPK
Ga0364925_0037799_1423_1605	3300034147	Sediment	GFAWQVGAGAEFRIWQFVYGIADARITRVNEKHLRAAAAEISGAFFTRHVDFGIGLRLSD
Ga0364929_0250748_2_235	3300034149	Sediment	HVESTFRSIHQEQYQYGGFAWQVGAGAEFRIWQFVYGIADARITRVNEKHLRAAAAEISGAFFTRHVDFGIGLRLSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103465

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences