Metagenome / Metatranscriptome Family F103440

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103440
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	111 residues
Representative Sequence	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS
Number of Associated Samples	79
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.14 %
% of genes near scaffold ends (potentially truncated)	23.76 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.307 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (8.911 % of family members)
Environment Ontology (ENVO)	Unclassified (56.436 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.238 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.77% β-sheet: 31.58% Coil/Unstructured: 59.65%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00216	Bac_DNA_binding	14.85
PF10851	DUF2652	2.97
PF02810	SEC-C	1.98
PF00072	Response_reg	1.98
PF12071	DUF3551	0.99
PF02371	Transposase_20	0.99
PF03695	UPF0149	0.99
PF00583	Acetyltransf_1	0.99
PF13683	rve_3	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	14.85
COG3079	Uncharacterized conserved protein YgfB, UPF0149 family	Function unknown [S]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.31 %
Unclassified	root	N/A	30.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.34 %
Unclassified	root	N/A	30.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.36 %
Unclassified	root	N/A	30.69 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	61.39 %
Unclassified	root	N/A	30.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	59.41 %
Unclassified	root	N/A	30.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	54.46 %
Unclassified	root	N/A	30.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	39.60 %
Unclassified	root	N/A	30.69 %
Bradyrhizobium frederickii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	2.97 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.98 %
Bradyrhizobium paxllaeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	0.99 %
Bradyrhizobium algeriense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	39.60 %
Unclassified	root	N/A	30.69 %
Bradyrhizobium frederickii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	2.97 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.99 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	0.99 %
Bradyrhizobium paxllaeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	0.99 %
Bradyrhizobium algeriense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005328\|Ga0070676_10119910	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300005328\|Ga0070676_10210692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1279	Open in IMG/M
3300005334\|Ga0068869_100139332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1872	Open in IMG/M
3300005340\|Ga0070689_101519533	Not Available	607	Open in IMG/M
3300005354\|Ga0070675_100410989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1209	Open in IMG/M
3300005365\|Ga0070688_100240452	Not Available	1285	Open in IMG/M
3300005438\|Ga0070701_10278418	Not Available	1021	Open in IMG/M
3300005438\|Ga0070701_10843081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	628	Open in IMG/M
3300005439\|Ga0070711_100595698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	922	Open in IMG/M
3300005441\|Ga0070700_100658636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	828	Open in IMG/M
3300005455\|Ga0070663_100025422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3997	Open in IMG/M
3300005471\|Ga0070698_102223925	Not Available	502	Open in IMG/M
3300005543\|Ga0070672_100945039	Not Available	763	Open in IMG/M
3300005548\|Ga0070665_102324741	Not Available	539	Open in IMG/M
3300005548\|Ga0070665_102341887	Not Available	537	Open in IMG/M
3300005577\|Ga0068857_101598261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	636	Open in IMG/M
3300005616\|Ga0068852_100275326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1621	Open in IMG/M
3300005718\|Ga0068866_10068539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1866	Open in IMG/M
3300005718\|Ga0068866_10387874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	897	Open in IMG/M
3300005719\|Ga0068861_101523781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	657	Open in IMG/M
3300005842\|Ga0068858_100332567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1453	Open in IMG/M
3300005842\|Ga0068858_101120570	Not Available	773	Open in IMG/M
3300006237\|Ga0097621_102103341	Not Available	540	Open in IMG/M
3300006603\|Ga0074064_11712826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	613	Open in IMG/M
3300009094\|Ga0111539_11722511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	727	Open in IMG/M
3300009101\|Ga0105247_10104886	Not Available	1811	Open in IMG/M
3300009101\|Ga0105247_11760234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	514	Open in IMG/M
3300009148\|Ga0105243_10128914	Not Available	2143	Open in IMG/M
3300009176\|Ga0105242_10060140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3120	Open in IMG/M
3300009553\|Ga0105249_10047970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3894	Open in IMG/M
3300010375\|Ga0105239_10018521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7691	Open in IMG/M
3300010375\|Ga0105239_10979525	Not Available	972	Open in IMG/M
3300010399\|Ga0134127_10391926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1371	Open in IMG/M
3300010399\|Ga0134127_12340629	Not Available	614	Open in IMG/M
3300010400\|Ga0134122_10423561	Not Available	1183	Open in IMG/M
3300010401\|Ga0134121_10215784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1666	Open in IMG/M
3300011119\|Ga0105246_11548885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	624	Open in IMG/M
3300012957\|Ga0164303_10738330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300012960\|Ga0164301_10703730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	760	Open in IMG/M
3300012961\|Ga0164302_10121401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1487	Open in IMG/M
3300012961\|Ga0164302_10764473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	724	Open in IMG/M
3300012984\|Ga0164309_10337623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1101	Open in IMG/M
3300012986\|Ga0164304_10424638	Not Available	951	Open in IMG/M
3300013297\|Ga0157378_10075023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3044	Open in IMG/M
3300013306\|Ga0163162_11609802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	741	Open in IMG/M
3300013308\|Ga0157375_10073737	All Organisms → cellular organisms → Bacteria	3433	Open in IMG/M
3300013308\|Ga0157375_10146772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	2490	Open in IMG/M
3300013308\|Ga0157375_11192886	Not Available	893	Open in IMG/M
3300014745\|Ga0157377_10199260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1270	Open in IMG/M
3300014969\|Ga0157376_11250307	Not Available	772	Open in IMG/M
3300014969\|Ga0157376_12192175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	591	Open in IMG/M
3300015372\|Ga0132256_103116769	Not Available	557	Open in IMG/M
3300015373\|Ga0132257_100303866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1918	Open in IMG/M
3300015373\|Ga0132257_101345126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	908	Open in IMG/M
3300017792\|Ga0163161_10202584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1530	Open in IMG/M
3300018053\|Ga0184626_10205899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	833	Open in IMG/M
3300018067\|Ga0184611_1054932	Not Available	1334	Open in IMG/M
3300018072\|Ga0184635_10327237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	594	Open in IMG/M
3300018073\|Ga0184624_10071333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1447	Open in IMG/M
3300018073\|Ga0184624_10541499	Not Available	503	Open in IMG/M
3300018081\|Ga0184625_10424288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	684	Open in IMG/M
3300018481\|Ga0190271_12482966	Not Available	621	Open in IMG/M
3300018481\|Ga0190271_13847299	Not Available	502	Open in IMG/M
3300021078\|Ga0210381_10115333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	885	Open in IMG/M
3300021082\|Ga0210380_10083998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1399	Open in IMG/M
3300025315\|Ga0207697_10085406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1333	Open in IMG/M
3300025321\|Ga0207656_10625501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	550	Open in IMG/M
3300025893\|Ga0207682_10391022	Not Available	657	Open in IMG/M
3300025899\|Ga0207642_10343000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	879	Open in IMG/M
3300025899\|Ga0207642_10557615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	708	Open in IMG/M
3300025901\|Ga0207688_10013624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4420	Open in IMG/M
3300025904\|Ga0207647_10128302	Not Available	1492	Open in IMG/M
3300025907\|Ga0207645_10052348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2608	Open in IMG/M
3300025914\|Ga0207671_10974314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	669	Open in IMG/M
3300025915\|Ga0207693_10417643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1049	Open in IMG/M
3300025919\|Ga0207657_10052458	All Organisms → cellular organisms → Bacteria → Proteobacteria	3539	Open in IMG/M
3300025926\|Ga0207659_10453397	Not Available	1080	Open in IMG/M
3300025927\|Ga0207687_10416219	Not Available	1108	Open in IMG/M
3300025930\|Ga0207701_10155370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	2026	Open in IMG/M
3300025930\|Ga0207701_10242348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	1575	Open in IMG/M
3300025930\|Ga0207701_10857318	Not Available	763	Open in IMG/M
3300025933\|Ga0207706_10030480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4810	Open in IMG/M
3300025933\|Ga0207706_10066975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3159	Open in IMG/M
3300025934\|Ga0207686_10404673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1040	Open in IMG/M
3300025934\|Ga0207686_11410393	Not Available	573	Open in IMG/M
3300025935\|Ga0207709_10468240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	977	Open in IMG/M
3300025940\|Ga0207691_10065819	All Organisms → cellular organisms → Bacteria	3279	Open in IMG/M
3300025940\|Ga0207691_10762249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	814	Open in IMG/M
3300025942\|Ga0207689_10190595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1691	Open in IMG/M
3300025960\|Ga0207651_10558013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	997	Open in IMG/M
3300025986\|Ga0207658_10531392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1051	Open in IMG/M
3300026023\|Ga0207677_10590667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	973	Open in IMG/M
3300026067\|Ga0207678_10216370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1639	Open in IMG/M
3300026067\|Ga0207678_11485149	Not Available	598	Open in IMG/M
3300026075\|Ga0207708_10072191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2645	Open in IMG/M
3300026121\|Ga0207683_10018520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5942	Open in IMG/M
3300031469\|Ga0170819_10158169	Not Available	618	Open in IMG/M
3300031474\|Ga0170818_110460517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	716	Open in IMG/M
3300031740\|Ga0307468_100202008	Not Available	1345	Open in IMG/M
3300032180\|Ga0307471_101983177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	730	Open in IMG/M
3300032205\|Ga0307472_101626266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.38%
Environmental	Environmental	37.62%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.38%
Terrestrial	Environmental → Terrestrial	29.70%
Aquatic	Environmental → Aquatic	7.92%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.59%
Soil	Environmental → Terrestrial → Soil	29.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.79%
Sediment	Environmental → Aquatic → Sediment	5.94%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.82%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070676_101199101	3300005328	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0070676_102106924	3300005328	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS*
Ga0068869_1001393322	3300005334	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPHIESTNVVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS*
Ga0070689_1015195331	3300005340	Switchgrass Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSP
Ga0070675_1004109892	3300005354	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0070688_1002404521	3300005365	Switchgrass Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIESTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0070701_102784181	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MEAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0070701_108430811	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0070711_1005956981	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVAVIPLAVSSLKENSLAPRGCLVRVTDQNSPRKRWFAVGFYPQRLAEVAVCNLPLIESTNVIFVRRSLKPAEIEMLRLRRGAVVECSVNNDTIQSVAAMQST*
Ga0070700_1006586361	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSILPANLSS*
Ga0070663_1000254226	3300005455	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS*
Ga0070698_1022239251	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSND
Ga0070672_1009450392	3300005543	Miscanthus Rhizosphere	MHAVIPLSLETNRLAPRGCLVRVRCGTDQTSRKERWFAVGIYFQRLAEAAVCDLPQIESTNAVFARRLLKRAEIEKLGLKRGQVVECRVSNDAVQSASHSSR*
Ga0070665_1023247411	3300005548	Switchgrass Rhizosphere	MDAVIPLAVNSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0070665_1023418872	3300005548	Switchgrass Rhizosphere	LKMEAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0068857_1015982613	3300005577	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPM
Ga0068852_1002753261	3300005616	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAE
Ga0068866_100685391	3300005718	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSAN
Ga0068866_103878741	3300005718	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYFQKMAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0068861_1015237811	3300005719	Switchgrass Rhizosphere	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSILPANLSS*
Ga0068858_1003325673	3300005842	Switchgrass Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPTAVAEQSANLSS*
Ga0068858_1011205701	3300005842	Switchgrass Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSP
Ga0097621_1021033412	3300006237	Miscanthus Rhizosphere	MDAVIPLVVKSLEGNRLVPRGCLVRVTCGTDQNSPTERWFAVGSYPQRLAEVAVRNLPLIESTNVVFARRPLKRAETEMLRLRRGQVVECRVSNDAIQSVSPMAVVEPENLNS*
Ga0074064_117128261	3300006603	Soil	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYFQKMAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPMAVVEQSILPANLSS*
Ga0111539_117225111	3300009094	Populus Rhizosphere	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDHNSPTERWFAVGSYPQRLAEVAVRNLPLIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPANLSSRGSG*
Ga0105247_101048863	3300009101	Switchgrass Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0105247_117602341	3300009101	Switchgrass Rhizosphere	MDAVIPLVVGSLETSRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCYLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0105243_101289142	3300009148	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS*
Ga0105242_100601406	3300009176	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS*
Ga0105249_100479707	3300009553	Switchgrass Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0105239_100185216	3300010375	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0105239_109795252	3300010375	Corn Rhizosphere	VLFACEALRMVAVIPLAVSSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFVRRSLKPAEIEMLMLRRGEVVECSVSNDTIQVYRYHTI*
Ga0134127_103919262	3300010399	Terrestrial Soil	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAGIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0134127_123406292	3300010399	Terrestrial Soil	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYFQKLAEAAVCNLSQIAPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0134122_104235611	3300010400	Terrestrial Soil	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIETLRLPRGQVVECSVRNDVIQSVSPMAVVEQSINFEH*
Ga0134121_102157844	3300010401	Terrestrial Soil	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS*
Ga0105246_115488852	3300011119	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSILPTNLSS*
Ga0164303_107383301	3300012957	Soil	AVIPLAVNSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFARRSLKPAEIEWLRLRRGEVVECSVSNDAIQVYRYHTI*
Ga0164301_107037302	3300012960	Soil	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLRHGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0164302_101214012	3300012961	Soil	VIPLVVSSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFVRRSLKPAEIEMLRLRRGEVLECSVSNDTIPETT*
Ga0164302_107644732	3300012961	Soil	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVVFARRPLKRAETEMLRLRRGQVVECRVSNDAIQSVSPMAVVEPENL
Ga0164309_103376232	3300012984	Soil	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVVFARRPLKRDEIEMLRLRRGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0164304_104246382	3300012986	Soil	MVAVIPLAVNSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFVRRSLKPAEIEMLMLRRGEVVECSVSNDTIQVYRYHTI*
Ga0157378_100750236	3300013297	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSN
Ga0163162_116098022	3300013306	Switchgrass Rhizosphere	MVAVIPLAVNSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFVRRSLKPAEIEMLRLRRGEVVECSVSNDTIQVYRYHTI*
Ga0157375_100737371	3300013308	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPMAVVEQSILPANLSS*
Ga0157375_101467723	3300013308	Miscanthus Rhizosphere	MHAVIPLSLETNRLAPRGCLVRVRCGTDQTSRKERWFAVGIYFQRLAEAAVCNLPQIESTNVVFARRLLKRAEIEKLRLKRGQVVECRVSNDAVQSASHSSR*
Ga0157375_111928862	3300013308	Miscanthus Rhizosphere	MDEVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFRRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRVQVVECRVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0157377_101992603	3300014745	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPMAVVEQSANLSS*
Ga0157376_112503071	3300014969	Miscanthus Rhizosphere	MDAVIPLVVKSLEGNRLVPRGCLVRVTCGTDQNSPTERWFAVGSYPQRSAEVAVRNIPQIESTNVVFARRALKRAEIEMLRLRRGQVVECGVSNDTIQSVSPMTVVEQSIIPANLSSWGSG*
Ga0157376_121921751	3300014969	Miscanthus Rhizosphere	MDAVIPFVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS*
Ga0132256_1031167692	3300015372	Arabidopsis Rhizosphere	IPMVVGNLNANHLAPRGCLVRVRCGTDQTFRKERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS*
Ga0132257_1003038662	3300015373	Arabidopsis Rhizosphere	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDAIQSVSPMAVVEQSIIPTNFRS*
Ga0132257_1013451261	3300015373	Arabidopsis Rhizosphere	MVAVIPLAVNGLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCKLPLIESTNVVFVRRSLKPAEIEMLMLRRGEVVECSVSNDTIQVYRYHTT*
Ga0163161_102025845	3300017792	Switchgrass Rhizosphere	MVAVIPLAVNSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLSEVAVCKLPLIESTNVVFVRRSLKPAEIEMLMLRRGEVVECSVSNDTIQVYRYHTI
Ga0184626_102058992	3300018053	Groundwater Sediment	MDTVIPLVVRSLETNHLAPRGCLVRVRYGTDQTSRKERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIKMLRLRPRQVVECSVSNDTIQSVSPMTVAEQSIILANLSSWGS
Ga0184611_10549321	3300018067	Groundwater Sediment	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRLAEVAVRNLPLIVSTNVVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPTAVAEQSANLSS
Ga0184635_103272371	3300018072	Groundwater Sediment	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLRLSPGQVVECSVSNDTIQSFSPMAVVEQTILPANLSS
Ga0184624_100713332	3300018073	Groundwater Sediment	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIELLKLRRGQVVECGV
Ga0184624_105414991	3300018073	Groundwater Sediment	DTVIPLVVRSLETNHLAPRGCLVRVRYGTDQTSRKERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIKMLRLRPRQVVECSVSNDTIQSVSPMTVAEQSIILANLSSWGSG
Ga0184625_104242882	3300018081	Groundwater Sediment	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECRVSNDDIQSVSPMAVVEQSANLTS
Ga0190271_124829662	3300018481	Soil	MDEVIPLVVGSLEANRLAPRGCLVRVRCGTDQTSRMERWFAVGIYFQRLAEAAVCNLSQIESTNVVFARRSLKRAEIELLRLRRGQVVECSVSNDAILGGFREFPEILERTG
Ga0190271_138472991	3300018481	Soil	MVVGNLKANRLAPRGCLVRVRCGTDQTSRKERWFAVGIYFQRLAEAAVCNLPQIESTNVVFARRLLKRAEIEMLKLRCGQVVECSVRNDAIQSASPMAVVEQSS
Ga0210381_101153332	3300021078	Groundwater Sediment	MDAVIPLAVKRLEGNRLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESANVVFARRPLKRAEIEMLKLRRGQVVECRVSNDAIQPVSPMAVVEQSIIPAN
Ga0210380_100839981	3300021082	Groundwater Sediment	MDTVIPLVVRSLETNHLAPRGCLVRVRYGTDQTSRKERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIKMLRLRPRQVVECSVSNDTIQSVSPMTVAEQSIIPANLSSWGS
Ga0207697_100854062	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVVFARRLLKRAEIEKLRLKRGQVVECRVSNDAVQSASHSSR
Ga0207656_106255012	3300025321	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQS
Ga0207682_103910221	3300025893	Miscanthus Rhizosphere	MDAVIPLSLETNRLAPRGCLVRVRCGTDQTSRKERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSAMAVVEQSIIPTNFRS
Ga0207642_103430001	3300025899	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS
Ga0207642_105576152	3300025899	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGV
Ga0207688_100136244	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS
Ga0207647_101283021	3300025904	Corn Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS
Ga0207645_100523481	3300025907	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS
Ga0207671_109743141	3300025914	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSA
Ga0207693_104176431	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTVYSLLRSPLRMVAVIPLAVNSLKDNSLAPRGCLVRVTDQNSPRRRWFAVGFYPQRLAEVAVCNLPLIESTNVIFVRRSLKPAEIEMLRLRRGAVVECSVNNDTIQSVAAMQST
Ga0207657_100524582	3300025919	Corn Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPIAVVEQSILPANLSS
Ga0207659_104533972	3300025926	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS
Ga0207687_104162191	3300025927	Miscanthus Rhizosphere	MEAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS
Ga0207701_101553701	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS
Ga0207701_102423482	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MHAVIPLSLETNRLAPRGCLVRVRCGTDQTSRKERWFAVGIYFQRLAEAAVCNLPQIESTNVVFARRLLKRAEIEKLRLKRGQVVECRVSNDAVQSASHSSR
Ga0207701_108573182	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS
Ga0207706_100304807	3300025933	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPTAVAEQSANLSS
Ga0207706_100669756	3300025933	Corn Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSND
Ga0207686_104046732	3300025934	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS
Ga0207686_114103932	3300025934	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLDPGQVVECSVSNDTIQSVSPMAVVEQSILPANLSS
Ga0207709_104682402	3300025935	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQS
Ga0207691_100658196	3300025940	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSSGQVVECSVSNDTIQSASPMAVVEQSILPANLSS
Ga0207691_107622492	3300025940	Miscanthus Rhizosphere	MHAVIPLSLETNRLAPRGCLVRVRCGTDQTSRKERWFAVGIYFQRLAEAAVCDLPQIESTNAVFARRLLKRAEIEKLGLKRGQVVECRVSNDAVQSASHSSR
Ga0207689_101905954	3300025942	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPHIESTNVVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSIIPVNLSIGT
Ga0207651_105580132	3300025960	Switchgrass Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS
Ga0207658_105313921	3300025986	Switchgrass Rhizosphere	MDAVIPLVVGSLETSRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFRS
Ga0207677_105906671	3300026023	Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFSVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVECGVSNDAIQSVSPMAVVEQSANLSS
Ga0207678_102163702	3300026067	Corn Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNAVFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS
Ga0207678_114851491	3300026067	Corn Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGQVVECSVSNDTIQSV
Ga0207708_100721912	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDAVIPLAVKSLEGNHLAPRGCLVRVRCGTDQNSPTERWFAVGSYPQRSAEVAVRNLPQIESTNVFFARRPLKRAEIEMLKLRRGQVVGCGVSNDAIQSVSPTAVAEQSANLSS
Ga0207683_100185204	3300026121	Miscanthus Rhizosphere	MDAVIPLVVGSLETNRLAPRGRLVRVRCGTHQTAPEERWFAVGIYLQKLAEAAVCNLPQIEPTNVVFALRPLKRAEIEMLRLSPGKVVECSVSNDTIQSVSPIAVVEQSILPANLSS
Ga0170819_101581692	3300031469	Forest Soil	MVARIPLTVSSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCNLPLIESTNVVFVRRSLKPAEIEMLRLRRREVVECSVSNDTIQSIANIQSR
Ga0170818_1104605172	3300031474	Forest Soil	MVAVIPLVVSSLKDNSLAPRGCLVRVTDQNSPKERWFAVGLYPQRLAEVAVCNLPLIESTNVVFVRRSLKPAEIEMLRLRRGEVVECSVSNDTIQSIATIQSR
Ga0307468_1002020081	3300031740	Hardwood Forest Soil	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMAVVEQSIIPTNFSS
Ga0307471_1019831772	3300032180	Hardwood Forest Soil	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQPVSPMAVVEQSIIPTNFSS
Ga0307472_1016262661	3300032205	Hardwood Forest Soil	MDAVIPLAVRSLETNCLAPRGCLVRVKNGTDQERWFAVGIYFQRLAEAAVCKLPQIESTNVVFARRPLKRAEIEMLRLRRGQVVECSVSNDTIQSVSPMEVVEQSIIPANLSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103440

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences