NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103197

Metagenome / Metatranscriptome Family F103197

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103197
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 43 residues
Representative Sequence MATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALA
Number of Associated Samples 94
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 99.01 %
% of genes from short scaffolds (< 2000 bps) 85.15 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.337 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.822 % of family members)
Environment Ontology (ENVO) Unclassified
(25.743 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.485 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 49.30%    β-sheet: 0.00%    Coil/Unstructured: 50.70%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF02569Pantoate_ligase 14.85
PF13519VWA_2 13.86
PF13458Peripla_BP_6 1.98
PF09140MipZ 1.98
PF07370DUF1489 0.99
PF00892EamA 0.99
PF01131Topoisom_bac 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0414Panthothenate synthetaseCoenzyme transport and metabolism [H] 14.85
COG1192ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQCell cycle control, cell division, chromosome partitioning [D] 1.98
COG0550DNA topoisomerase IAReplication, recombination and repair [L] 0.99
COG1110Reverse gyraseReplication, recombination and repair [L] 0.99
COG5458Uncharacterized conserved protein, DUF1489 domainFunction unknown [S] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.34 %
All OrganismsrootAll Organisms33.66 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000655|AF_2010_repII_A100DRAFT_1060738Not Available670Open in IMG/M
3300001661|JGI12053J15887_10416374Not Available645Open in IMG/M
3300002075|JGI24738J21930_10130466Not Available550Open in IMG/M
3300002245|JGIcombinedJ26739_101397431All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales593Open in IMG/M
3300005168|Ga0066809_10047967Not Available951Open in IMG/M
3300005329|Ga0070683_101838252Not Available582Open in IMG/M
3300005332|Ga0066388_107021432All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria566Open in IMG/M
3300005363|Ga0008090_10213197All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1297Open in IMG/M
3300005363|Ga0008090_10223657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria522Open in IMG/M
3300005367|Ga0070667_100597055Not Available1017Open in IMG/M
3300005444|Ga0070694_100194154All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1509Open in IMG/M
3300005549|Ga0070704_101525021All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria615Open in IMG/M
3300005552|Ga0066701_10047201All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2346Open in IMG/M
3300005713|Ga0066905_100029040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3103Open in IMG/M
3300005713|Ga0066905_101979282All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria540Open in IMG/M
3300005981|Ga0081538_10038437All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3087Open in IMG/M
3300006038|Ga0075365_10693872All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria719Open in IMG/M
3300006038|Ga0075365_10972826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria598Open in IMG/M
3300006580|Ga0074049_13167724All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales608Open in IMG/M
3300006853|Ga0075420_100947001All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria741Open in IMG/M
3300009012|Ga0066710_102056086Not Available843Open in IMG/M
3300009088|Ga0099830_10053706All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2853Open in IMG/M
3300009090|Ga0099827_10830748Not Available800Open in IMG/M
3300009101|Ga0105247_11005860Not Available651Open in IMG/M
3300009137|Ga0066709_103066125Not Available612Open in IMG/M
3300009137|Ga0066709_104211293Not Available524Open in IMG/M
3300009147|Ga0114129_11370126Not Available874Open in IMG/M
3300009156|Ga0111538_10282328All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2102Open in IMG/M
3300009792|Ga0126374_10115981All Organisms → cellular organisms → Bacteria1555Open in IMG/M
3300010046|Ga0126384_11527798Not Available626Open in IMG/M
3300010048|Ga0126373_10697235Not Available1073Open in IMG/M
3300010360|Ga0126372_12551836Not Available562Open in IMG/M
3300010375|Ga0105239_10264463All Organisms → cellular organisms → Bacteria1934Open in IMG/M
3300010398|Ga0126383_11095732Not Available886Open in IMG/M
3300012204|Ga0137374_10023000All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae7011Open in IMG/M
3300012376|Ga0134032_1156278Not Available863Open in IMG/M
3300012914|Ga0157297_10363769Not Available567Open in IMG/M
3300012951|Ga0164300_11141506Not Available512Open in IMG/M
3300012972|Ga0134077_10536514Not Available522Open in IMG/M
3300012988|Ga0164306_10334806Not Available1116Open in IMG/M
3300014150|Ga0134081_10018573All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1939Open in IMG/M
3300014317|Ga0075343_1002923All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2348Open in IMG/M
3300014745|Ga0157377_10998796Not Available633Open in IMG/M
3300015264|Ga0137403_10779739Not Available812Open in IMG/M
3300015374|Ga0132255_103537519Not Available664Open in IMG/M
3300016294|Ga0182041_10541684Not Available1015Open in IMG/M
3300016319|Ga0182033_10010382All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68605228Open in IMG/M
3300016341|Ga0182035_10057963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2664Open in IMG/M
3300016357|Ga0182032_10056868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2570Open in IMG/M
3300016387|Ga0182040_10955595Not Available713Open in IMG/M
3300018469|Ga0190270_12189817Not Available613Open in IMG/M
3300020580|Ga0210403_11523104Not Available502Open in IMG/M
3300021951|Ga0222624_1326402Not Available970Open in IMG/M
3300025900|Ga0207710_10548369Not Available602Open in IMG/M
3300025910|Ga0207684_10883097Not Available752Open in IMG/M
3300025915|Ga0207693_10109975All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2161Open in IMG/M
3300025940|Ga0207691_11523933Not Available546Open in IMG/M
3300026095|Ga0207676_10851318Not Available892Open in IMG/M
3300027014|Ga0207815_1045546Not Available528Open in IMG/M
3300027063|Ga0207762_1030849Not Available819Open in IMG/M
3300027388|Ga0208995_1031202Not Available932Open in IMG/M
3300027521|Ga0209524_1020739All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1357Open in IMG/M
3300027583|Ga0209527_1125955Not Available571Open in IMG/M
3300027605|Ga0209329_1108527Not Available609Open in IMG/M
3300028379|Ga0268266_11070290Not Available780Open in IMG/M
3300028381|Ga0268264_12102084Not Available573Open in IMG/M
3300028536|Ga0137415_10539389Not Available976Open in IMG/M
3300028721|Ga0307315_10097673Not Available861Open in IMG/M
3300028754|Ga0307297_10015343All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2093Open in IMG/M
3300028768|Ga0307280_10156749Not Available788Open in IMG/M
3300028771|Ga0307320_10156137Not Available883Open in IMG/M
3300028782|Ga0307306_10041343Not Available1125Open in IMG/M
3300028793|Ga0307299_10266367Not Available644Open in IMG/M
3300028796|Ga0307287_10009789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3192Open in IMG/M
3300028799|Ga0307284_10234922Not Available726Open in IMG/M
3300028802|Ga0307503_10012879All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2536Open in IMG/M
3300028810|Ga0307294_10056899Not Available1151Open in IMG/M
3300028906|Ga0308309_10639171Not Available924Open in IMG/M
3300031170|Ga0307498_10379559Not Available550Open in IMG/M
3300031545|Ga0318541_10753170Not Available543Open in IMG/M
3300031549|Ga0318571_10037795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1381Open in IMG/M
3300031561|Ga0318528_10604429Not Available588Open in IMG/M
3300031564|Ga0318573_10640482Not Available572Open in IMG/M
3300031640|Ga0318555_10196303Not Available1087Open in IMG/M
3300031751|Ga0318494_10555502Not Available670Open in IMG/M
3300031765|Ga0318554_10127280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1440Open in IMG/M
3300031770|Ga0318521_10011019All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3888Open in IMG/M
3300031781|Ga0318547_10652185Not Available654Open in IMG/M
3300031781|Ga0318547_11012234Not Available519Open in IMG/M
3300031846|Ga0318512_10555479Not Available584Open in IMG/M
3300031846|Ga0318512_10673459Not Available529Open in IMG/M
3300031890|Ga0306925_10367907All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1543Open in IMG/M
3300031890|Ga0306925_10942624Not Available884Open in IMG/M
3300032001|Ga0306922_11385227Not Available708Open in IMG/M
3300032025|Ga0318507_10131755Not Available1060Open in IMG/M
3300032060|Ga0318505_10067823All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1566Open in IMG/M
3300032063|Ga0318504_10318504Not Available737Open in IMG/M
3300032068|Ga0318553_10489590Not Available644Open in IMG/M
3300032174|Ga0307470_10836832Not Available717Open in IMG/M
3300032261|Ga0306920_103087939Not Available626Open in IMG/M
3300033290|Ga0318519_10686463Not Available625Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.91%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.94%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.95%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.97%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.98%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.98%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.98%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.99%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.99%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006038Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5Host-AssociatedOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012376Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014317Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021951Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027014Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027063Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)EnvironmentalOpen in IMG/M
3300027388Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027521Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027583Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028754Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157EnvironmentalOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028810Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A100DRAFT_106073813300000655Forest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLGV
JGI12053J15887_1041637423300001661Forest SoilMALIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLG
JGI24738J21930_1013046623300002075Corn RhizosphereMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGGGLG
JGIcombinedJ26739_10139743123300002245Forest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGAL
Ga0066809_1004796713300005168SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGA
Ga0070683_10183825223300005329Corn RhizosphereMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGGGLGA
Ga0066388_10702143223300005332Tropical Forest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALA
Ga0008090_1021319733300005363Tropical Rainforest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAG
Ga0008090_1022365723300005363Tropical Rainforest SoilMAQIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLL
Ga0070667_10059705523300005367Switchgrass RhizosphereMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGGGLGAL
Ga0070694_10019415433300005444Corn, Switchgrass And Miscanthus RhizosphereMTLIFGLVLLALLLWALHAFTKDKPQTAAVVLKTGGGLGAIAVA
Ga0070704_10152502113300005549Corn, Switchgrass And Miscanthus RhizosphereMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVAGLL
Ga0066701_1004720113300005552SoilMATIVFGLVVLALLLWALNAFTKVNPQTAAVMLKTGGGLGALAVA
Ga0066905_10002904063300005713Tropical Forest SoilMATVLFGIVVLALVLVALNTFTKVNPHTAAVVLKTGGG
Ga0066905_10197928223300005713Tropical Forest SoilMATIIFGLVILALALWALNAFTKVNPQTAAAVLKAGGGIGAL
Ga0081538_1003843753300005981Tabebuia Heterophylla RhizosphereMATLIFGLVILALALWALNAFTKVNPQTAAVVLKT
Ga0075365_1069387213300006038Populus EndosphereMALIFGLVVLALVLWALHAFTQVKPQTAAVVLKTGGGLGAIAIAGLLGARGRLD
Ga0075365_1097282613300006038Populus EndosphereMATILFGLVVLALVLWALNSFTKVNPQTAAVVLKTGGGL
Ga0074049_1316772423300006580SoilMASLIFGVLVLALALWALNAFTKVNPHTAAAVLKAGGGL
Ga0075420_10094700113300006853Populus RhizosphereMAAILFGIVVLALGLWALSAFTRLKPHTAAVVLKTGGGVGALALAG
Ga0066710_10205608623300009012Grasslands SoilMATLIFGLVVLALLLWAFSAFTKISPQTAAVVVKT
Ga0099830_1005370613300009088Vadose Zone SoilMASLIFGLVVLALALWALNAFTKVTPQTAAAVLKAGGGLGAL
Ga0099827_1083074823300009090Vadose Zone SoilMAMLLFGLVVLALAMWALNALTKISPQKAAVVLKTGGG
Ga0105247_1100586013300009101Switchgrass RhizosphereMASLLFGVVVLALALWALNAFTKVSPHRAAVALKTSGGLGALALAGVLGIRGR
Ga0066709_10306612513300009137Grasslands SoilMATLLFGLVVLALLLYALNAFSKVNPHTAAVVLKTGGGIGALAIAG
Ga0066709_10421129313300009137Grasslands SoilMATIVFGLVVLALVLWALNAFTKVNPQTAAVVLKT
Ga0114129_1137012613300009147Populus RhizosphereMATIIFGLVVLALALWTLNAFTKVNPQTVAVVLKTGGGLGALAV
Ga0111538_1028232813300009156Populus RhizosphereMALIFGVVLLALLLWALHAFTKIKPQTAAVVLKTGGGL
Ga0126374_1011598133300009792Tropical Forest SoilMATVIFGLVVLALLLWALNAFTKVKPQTAAVVLKTGGGLGALA
Ga0126384_1152779813300010046Tropical Forest SoilMATLLFGLVVLALALWALNAFTRVNPHTAATAIKTGGGLGALALAGVLGVRGRL
Ga0126373_1069723523300010048Tropical Forest SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGALAAAG
Ga0126372_1255183623300010360Tropical Forest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKT
Ga0105239_1026446333300010375Corn RhizosphereMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGGGLGALAVAGLLLAGP
Ga0126383_1109573213300010398Tropical Forest SoilMATILFGLVVLALVLWALNAFTKVNPQTAAVVLKTG
Ga0137374_10023000103300012204Vadose Zone SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLGVR
Ga0134032_115627823300012376Grasslands SoilMATIVFGLVVLALVLWALNAFTKVNPQTAAVMLKTGGGLGALAV
Ga0157297_1036376923300012914SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTG
Ga0164300_1114150623300012951SoilMALIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVA
Ga0134077_1053651413300012972Grasslands SoilMATILFGLVVLALVLWAFNAFTKTNPQTAAVVLKTGGGLGALAV
Ga0164306_1033480613300012988SoilMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGGG
Ga0134081_1001857333300014150Grasslands SoilMATIVFGLVVLALLLWALNAFTKVNPQTAAVMLKTGGGL
Ga0075343_100292313300014317Natural And Restored WetlandsMALIFGLVVLALLLWALHSFSQANPRTMAIVFKTGGGVGALA
Ga0157377_1099879613300014745Miscanthus RhizosphereMALIFGLVLLALLLWALHAFTKIKPQTAAVALKTGG
Ga0137403_1077973923300015264Vadose Zone SoilMASLLFGVVVLALALWALNAFTKVNPHTAAAVLKAGGGLGALAVAGVKLVGERLPLD*
Ga0132255_10353751913300015374Arabidopsis RhizosphereMAFIFGLVLLALLLWALHAFTQVKPQTAAVVLKTGG
Ga0182041_1054168413300016294SoilMGSLIVGLVVLALGLLALNAFTKVSPHKAAAVLKAGGGLGALAL
Ga0182033_1001038213300016319SoilMATVIFGLVVLALLLWALNAFTKVKPQTAAVVLKTGGGLGALAVAGVLGVRGRL
Ga0182035_1005796343300016341SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLGVR
Ga0182032_1005686843300016357SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGA
Ga0182040_1095559523300016387SoilMATIVFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLGVRGRL
Ga0190270_1218981713300018469SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAVAGLLGAR
Ga0210403_1152310413300020580SoilMASLIFGVLVLALALWALNAFTKVNPHTAAAVLKAGGGLGALA
Ga0222624_132640213300021951Groundwater SedimentMALIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAVAGL
Ga0207710_1054836923300025900Switchgrass RhizosphereMASLLFGVVVLALALWALNAFTKVSPHRAAVALKTSG
Ga0207684_1088309723300025910Corn, Switchgrass And Miscanthus RhizosphereMATVVFGLVVLALLLWALNAFTKVNPQTAAVVLKTGGGLGAL
Ga0207693_1010997513300025915Corn, Switchgrass And Miscanthus RhizosphereMATILFGLVVLALALWALNAFTKVNPQTAAIVLKTGGGLGALAVAGVLG
Ga0207691_1152393323300025940Miscanthus RhizosphereMTLIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGL
Ga0207676_1085131813300026095Switchgrass RhizosphereMASLLFGVVVLALALWALNAFTKVSPHRAAVALKTSGG
Ga0207815_104554623300027014Tropical Forest SoilMGALIFGLVALALGLVALNAFTKVNPHKAAAVLKAGGGLGALALAGVL
Ga0207762_103084923300027063Tropical Forest SoilMAPLIFGLVVLALVLWALNAFTKINPHTAAAVLKAGGGVGALALAGV
Ga0208995_103120213300027388Forest SoilMATLIFGLVLLALALYALNAFTKVNPRTAAVVLKTGGGL
Ga0209524_102073933300027521Forest SoilMGSLIFGLVVLALGLLALNAFTKVNPHKAATVLKAGGGLGALALAGVLGAR
Ga0209527_112595513300027583Forest SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGG
Ga0209329_110852713300027605Forest SoilMATILFGLVVLALVLWALNAFTKVNPQTAAIVLKTGGGLGALAV
Ga0268266_1107029023300028379Switchgrass RhizosphereMTLIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGA
Ga0268264_1210208413300028381Switchgrass RhizosphereMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVAGLLG
Ga0137415_1053938923300028536Vadose Zone SoilMASLIFGVLVLALALWALSAFTKVNPHTAAAVLKAGGGL
Ga0307315_1009767313300028721SoilMTLIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGG
Ga0307297_1001534313300028754SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVAGL
Ga0307280_1015674923300028768SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGG
Ga0307320_1015613723300028771SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAV
Ga0307306_1004134313300028782SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGA
Ga0307299_1026636723300028793SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVA
Ga0307287_1000978943300028796SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAVAGLFGARGR
Ga0307284_1023492223300028799SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAVAGLL
Ga0307503_1001287943300028802SoilMALIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVAGLLGARGRLD
Ga0307294_1005689923300028810SoilMALIFGLVVLALLLWALHAFTKVKPQTAAVVLKTGGGLGALAVAGLLGA
Ga0308309_1063917123300028906SoilMAPLIFGLVVLALALWALNAFTKVNPHTAAAVLKAGGGLGAL
Ga0307498_1037955913300031170SoilMTLIFGLVLLALLLWALHAFTKVKPQTAAVVLKTGGGLGAIAVAGLLGAR
Ga0318541_1075317013300031545SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAA
Ga0318571_1003779513300031549SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGAL
Ga0318528_1060442913300031561SoilMGPLLLGLVVLVLALWALNAFTKVNPHSAAAVLKA
Ga0318573_1064048223300031564SoilMGPLLLGLVVLVLALWALNSFTKVNPHSAAAVLKAGGGLGALA
Ga0318555_1019630323300031640SoilMATIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLG
Ga0318494_1055550223300031751SoilMAQIIFGLVVLALVLWALNAFTKVKPQTAAVVLKTGGGLGALAAAGLLGVR
Ga0318554_1012728033300031765SoilMAQIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLG
Ga0318521_1001101963300031770SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVFKTGG
Ga0318547_1065218523300031781SoilMATVIFGLVVLALLLWALNAFTKVKPHTAAVVLKTGGGLGALAVAGVLG
Ga0318547_1101223413300031781SoilMATIVFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLG
Ga0318512_1055547923300031846SoilMASLLFGVVVLALALWALNAFTRVDPRRAAAVLKAGGGV
Ga0318512_1067345923300031846SoilMAQIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLGALAAAGLLGVRGRL
Ga0306925_1036790713300031890SoilMAPLLFGVVLLVLALVALNAFTKVNPQTAAAVLKAGGGLGALAV
Ga0306925_1094262413300031890SoilMAPLIFGLVVLALALWALNAFTKINPHTAAAVLKAGGGLGALA
Ga0306922_1138522713300032001SoilMAPLLFGVVLLVLALVALNAFTKVNPHTAAAVLKAGGGLGALAVAGVLG
Ga0318507_1013175523300032025SoilMAQIIFGLVVLALVLWALNAFTKVNPQTAAVVLKTGGGLG
Ga0318505_1006782313300032060SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGGGLG
Ga0318504_1031850423300032063SoilMATIIFGLVVLALALWALNAFTKVNPQTAAVVLKTGG
Ga0318553_1048959013300032068SoilMATVIFGLVVLALLLWALNAFTKVKPQTAAVVLKTGGGLG
Ga0307470_1083683223300032174Hardwood Forest SoilMAALVFGVVVLVLALWALNTFTKVNPHTAAVVLKTGGGLGALGL
Ga0306920_10308793913300032261SoilMATLLFGLVVLALVLYALNAFRKVNPHTAAVVLKTGGGIGALAIAGVL
Ga0318519_1068646323300033290SoilMATVIFGLVVLALLLWALNAFTKVKPQTAAVVLKTGGGLGALAVAGVLG


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