NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103145

Metagenome / Metatranscriptome Family F103145

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103145
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 51 residues
Representative Sequence MLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK
Number of Associated Samples 84
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 46.53 %
% of genes near scaffold ends (potentially truncated) 32.67 %
% of genes from short scaffolds (< 2000 bps) 85.15 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.396 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(14.852 % of family members)
Environment Ontology (ENVO) Unclassified
(36.634 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(54.455 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.18%    β-sheet: 0.00%    Coil/Unstructured: 65.82%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF06067DUF932 2.97
PF01844HNH 0.99
PF02075RuvC 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0817Holliday junction resolvasome RuvABC endonuclease subunit RuvCReplication, recombination and repair [L] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.40 %
All OrganismsrootAll Organisms39.60 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001274|B570J13895_1019937All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage666Open in IMG/M
3300001838|RCM33_1030834All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage574Open in IMG/M
3300001838|RCM33_1032415All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage574Open in IMG/M
3300001968|GOS2236_1054683Not Available1752Open in IMG/M
3300002408|B570J29032_109671105All Organisms → Viruses → Predicted Viral1028Open in IMG/M
3300003413|JGI25922J50271_10124412Not Available542Open in IMG/M
3300003430|JGI25921J50272_10118664Not Available556Open in IMG/M
3300005069|Ga0071350_1000039All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes18683Open in IMG/M
3300005527|Ga0068876_10179158All Organisms → Viruses → Predicted Viral1236Open in IMG/M
3300005527|Ga0068876_10543020Not Available634Open in IMG/M
3300005662|Ga0078894_10759362Not Available851Open in IMG/M
3300005805|Ga0079957_1175029All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1062Open in IMG/M
3300006639|Ga0079301_1030713All Organisms → Viruses → Predicted Viral1815Open in IMG/M
3300006641|Ga0075471_10173656All Organisms → Viruses → Predicted Viral1132Open in IMG/M
3300006641|Ga0075471_10450826All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage642Open in IMG/M
3300006875|Ga0075473_10085625All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1242Open in IMG/M
3300006917|Ga0075472_10260393Not Available854Open in IMG/M
3300007171|Ga0102977_1003113All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium G202048Open in IMG/M
3300007551|Ga0102881_1056147All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1100Open in IMG/M
3300007667|Ga0102910_1077960All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage764Open in IMG/M
3300007974|Ga0105747_1124427All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage819Open in IMG/M
3300008106|Ga0114339_1164760Not Available765Open in IMG/M
3300008107|Ga0114340_1049046Not Available1855Open in IMG/M
3300008107|Ga0114340_1053265All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C4033531Open in IMG/M
3300008107|Ga0114340_1109087All Organisms → Viruses → Predicted Viral1092Open in IMG/M
3300008107|Ga0114340_1178155Not Available746Open in IMG/M
3300008114|Ga0114347_1019875All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp.3187Open in IMG/M
3300008116|Ga0114350_1012052Not Available3822Open in IMG/M
3300008117|Ga0114351_1461651Not Available509Open in IMG/M
3300008122|Ga0114359_1298498Not Available558Open in IMG/M
3300008258|Ga0114840_1054020Not Available630Open in IMG/M
3300008450|Ga0114880_1240804Not Available572Open in IMG/M
3300008953|Ga0104241_1004441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1021009Open in IMG/M
3300008962|Ga0104242_1013827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA1021414Open in IMG/M
3300008962|Ga0104242_1067437Not Available598Open in IMG/M
3300009233|Ga0103856_10066313All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage658Open in IMG/M
3300009239|Ga0103858_10087373All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage769Open in IMG/M
3300010156|Ga0068873_1017326Not Available723Open in IMG/M
3300010354|Ga0129333_10144303Not Available2186Open in IMG/M
3300010354|Ga0129333_10427867All Organisms → Viruses → Predicted Viral1168Open in IMG/M
3300010354|Ga0129333_11477992Not Available557Open in IMG/M
3300010370|Ga0129336_10539673Not Available626Open in IMG/M
3300011381|Ga0102688_1575526Not Available525Open in IMG/M
3300012000|Ga0119951_1113675Not Available629Open in IMG/M
3300013004|Ga0164293_10916504Not Available550Open in IMG/M
3300013005|Ga0164292_11021480Not Available515Open in IMG/M
(restricted) 3300013126|Ga0172367_10771864Not Available501Open in IMG/M
(restricted) 3300013132|Ga0172372_10261411Not Available1259Open in IMG/M
(restricted) 3300014720|Ga0172376_10089908Not Available2227Open in IMG/M
3300017788|Ga0169931_10737539Not Available642Open in IMG/M
3300020172|Ga0211729_10836482Not Available528Open in IMG/M
3300020527|Ga0208232_1035194Not Available672Open in IMG/M
3300020555|Ga0208358_1034034Not Available797Open in IMG/M
3300020558|Ga0208362_1055287Not Available622Open in IMG/M
3300021438|Ga0213920_1056561Not Available801Open in IMG/M
3300021961|Ga0222714_10190577All Organisms → Viruses → Predicted Viral1192Open in IMG/M
3300021961|Ga0222714_10296823Not Available887Open in IMG/M
3300021962|Ga0222713_10150425Not Available1606Open in IMG/M
3300021963|Ga0222712_10064990All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2658Open in IMG/M
3300022747|Ga0228703_1023346All Organisms → Viruses → Predicted Viral1950Open in IMG/M
3300022747|Ga0228703_1059628Not Available993Open in IMG/M
3300022752|Ga0214917_10012925Not Available7515Open in IMG/M
3300022752|Ga0214917_10050378All Organisms → Viruses → Predicted Viral2824Open in IMG/M
3300023179|Ga0214923_10032014All Organisms → Viruses → Predicted Viral4354Open in IMG/M
3300024289|Ga0255147_1062883Not Available708Open in IMG/M
3300024343|Ga0244777_10022378All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3998Open in IMG/M
3300024500|Ga0255143_1036300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102813Open in IMG/M
3300025732|Ga0208784_1177662Not Available624Open in IMG/M
3300025872|Ga0208783_10129745Not Available1084Open in IMG/M
3300026573|Ga0255269_1074910All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102931Open in IMG/M
3300027214|Ga0208306_1054434All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage692Open in IMG/M
3300027314|Ga0208811_1113610Not Available542Open in IMG/M
3300027486|Ga0255086_1008027All Organisms → Viruses → Predicted Viral2243Open in IMG/M
3300027488|Ga0255084_1038621Not Available884Open in IMG/M
3300027499|Ga0208788_1070062Not Available886Open in IMG/M
3300027529|Ga0255077_1084808Not Available596Open in IMG/M
3300027531|Ga0208682_1093629All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage721Open in IMG/M
3300027541|Ga0255158_1000412Not Available13653Open in IMG/M
3300027769|Ga0209770_10377041Not Available528Open in IMG/M
3300027793|Ga0209972_10061888Not Available1992Open in IMG/M
3300027805|Ga0209229_10000004All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes91329Open in IMG/M
3300028025|Ga0247723_1098677Not Available740Open in IMG/M
3300028286|Ga0256331_1132694Not Available562Open in IMG/M
3300029933|Ga0119945_1008178Not Available1399Open in IMG/M
3300031758|Ga0315907_10175113All Organisms → Viruses → Predicted Viral1808Open in IMG/M
3300031758|Ga0315907_10177146Not Available1796Open in IMG/M
3300031758|Ga0315907_10657269Not Available804Open in IMG/M
3300031758|Ga0315907_10684649Not Available782Open in IMG/M
3300031787|Ga0315900_11133922Not Available501Open in IMG/M
3300031857|Ga0315909_10357583Not Available1064Open in IMG/M
3300031951|Ga0315904_10309905All Organisms → Viruses → Predicted Viral1474Open in IMG/M
3300031951|Ga0315904_11027814Not Available650Open in IMG/M
3300031951|Ga0315904_11472777Not Available503Open in IMG/M
3300033418|Ga0316625_100389967All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1045Open in IMG/M
3300033482|Ga0316627_100452453All Organisms → Viruses → Predicted Viral1123Open in IMG/M
3300033816|Ga0334980_0158569Not Available922Open in IMG/M
3300033980|Ga0334981_0456004Not Available539Open in IMG/M
3300034023|Ga0335021_0340080Not Available796Open in IMG/M
3300034066|Ga0335019_0209809All Organisms → Viruses → Predicted Viral1256Open in IMG/M
3300034111|Ga0335063_0399117Not Available696Open in IMG/M
3300034118|Ga0335053_0171750Not Available1446Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater14.85%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton9.90%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake8.91%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater8.91%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater7.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous5.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater3.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.96%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater2.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater1.98%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton1.98%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water1.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.98%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.98%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.99%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.99%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.99%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.99%
AquaticEnvironmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic0.99%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.99%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.99%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001274Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnionEnvironmentalOpen in IMG/M
3300001838Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2aEnvironmentalOpen in IMG/M
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300003413Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DDEnvironmentalOpen in IMG/M
3300003430Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SDEnvironmentalOpen in IMG/M
3300005069Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006639Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11EnvironmentalOpen in IMG/M
3300006641Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006917Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300007171Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projectsEnvironmentalOpen in IMG/M
3300007551Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3EnvironmentalOpen in IMG/M
3300007667Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3EnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008106Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTREnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008122Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTREnvironmentalOpen in IMG/M
3300008258Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NAEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300008953Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT4EnvironmentalOpen in IMG/M
3300008962Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5EnvironmentalOpen in IMG/M
3300009233Microbial communities of water from Amazon river, Brazil - RCM9EnvironmentalOpen in IMG/M
3300009239Microbial communities of water from Amazon river, Brazil - RCM11EnvironmentalOpen in IMG/M
3300010156Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel2S_0400h metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010370Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNAEnvironmentalOpen in IMG/M
3300011381Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300017788Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20LEnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020527Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020555Freshwater microbial communities from Lake Mendota, WI - 10AUG2009 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020558Freshwater microbial communities from Lake Mendota, WI - 13OCT2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021438Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MGEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300022747Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MGEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023179Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510EnvironmentalOpen in IMG/M
3300024289Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8hEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024500Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_0hEnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025872Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026573Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027214Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027314Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027486Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8dEnvironmentalOpen in IMG/M
3300027488Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8dEnvironmentalOpen in IMG/M
3300027499Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 (SPAdes)EnvironmentalOpen in IMG/M
3300027529Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8hEnvironmentalOpen in IMG/M
3300027531Estuarine microbial communities from the Columbia River estuary - metaG 1568-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027541Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8hEnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027793Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028286Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029933Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300033482Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_CEnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033980Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034118Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J13895_101993743300001274FreshwaterMLSEKTFNKIVWEYQNGGVISNHPELTTYERKVLLKYLFSLPVKENK*
RCM33_103083413300001838Marine PlanktonMLTQTTLEKIKYEYQHGGVKQYHPEISMRERKALLKYLFTLPTHKDCDCEVIK*
RCM33_103241513300001838Marine PlanktonMLTQTTLEKITYEYQHGGVKQYHPEISFVERKALLKYLFSLPTHKDCDCEVIA*
GOS2236_105468343300001968MarineMLTQKTLDKIVYEYQHGGVQAYHPEISMRERKALLRYLFSLPTHKNIDCDCEVIA*
B570J29032_10967110513300002408FreshwaterMLSEKTLNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
JGI25922J50271_1012441223300003413Freshwater LakeMLSEKTFNKIVFDYQHGGVKNFHPEISFSERKALLKYLFSIPTHKDCECAK*
JGI25921J50272_1011866423300003430Freshwater LakeMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK*
Ga0071350_1000039153300005069FreshwaterMLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0068876_1017915823300005527Freshwater LakeMLTQKTLDKIIYEYQHGGVSQHHPEISFVERRALLKYLFTLPTHKDCDCEVIA*
Ga0068876_1054302013300005527Freshwater LakeMLSEKTFNKIVFDYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK*
Ga0078894_1075936233300005662Freshwater LakeMLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK*
Ga0079957_117502933300005805LakeKLLDTKERKKMLSQNTLDKIVYEYQHGGVKQFHPEISFVERKALLNYLFSLPTHTNCECEVK*
Ga0079301_103071383300006639Deep SubsurfaceMLSQKTFDKIVFDYQHGGVKNFHPEISFSERKALLKYLFSIPTHKDCECAK*
Ga0075471_1017365643300006641AqueousMLSDKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK*
Ga0075471_1045082623300006641AqueousMLLLEVGSNPMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK*
Ga0075473_1008562573300006875AqueousLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0075472_1026039323300006917AqueousMLSEKTFNEIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0102977_100311343300007171Freshwater LakeMLSEKTLEKIKYEYQHGGVKQYHPEISMSERKALLKYLFSLPTHKDCDCEVIA*
Ga0102881_105614713300007551EstuarineKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECAK*
Ga0102910_107796033300007667EstuarineMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK*
Ga0105747_112442713300007974Estuary WaterENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK*
Ga0114339_116476023300008106Freshwater, PlanktonMLSEKTFNKIVFDYQHGGVKSFHPEISFSERKALLKYLFSIPTHKDCECAK*
Ga0114340_104904643300008107Freshwater, PlanktonMLTQTTLDKITYEYQHGGVKSNHPELTTYERKALLKYLFSLPTHKDCECGK*
Ga0114340_105326553300008107Freshwater, PlanktonMLSDKTLEKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0114340_110908753300008107Freshwater, PlanktonMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDC
Ga0114340_117815513300008107Freshwater, PlanktonMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSIPTHKDCECVK*
Ga0114347_101987513300008114Freshwater, PlanktonMLSDKTIEKIVYEYQHGGVQAYHPEISLSERKALLKYLWSLP
Ga0114350_101205253300008116Freshwater, PlanktonMLTQKTLDKIVYEYQHGGVSQYHPEISFSERKALLKYLFSIPTHKDCDCEVIA*
Ga0114351_146165133300008117Freshwater, PlanktonKTLEKIVFEYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK*
Ga0114359_129849813300008122Freshwater, PlanktonSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK*
Ga0114840_105402033300008258Freshwater, PlanktonLTQKTLDKIIYEYQHGGVSQHHPEISFVERRALLKYLFSLPTHKDCDCEVIA*
Ga0114880_124080423300008450Freshwater LakeMLSEKTFNKIVFDYQHGGVKNFHPEISFSERKALLKYLFSIHTHKDCECAK*
Ga0104241_100444133300008953FreshwaterMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECAK*
Ga0104242_101382743300008962FreshwaterMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSIPTHKDCECAK*
Ga0104242_106743723300008962FreshwaterMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK*
Ga0103856_1006631333300009233River WaterTLEKIKYEYQHGGVKQYHPEISMRERKALLKYLFTLPTHKDCDCEVIK*
Ga0103858_1008737323300009239River WaterMLSQNTLDKIVYQYQHGGVKQYHPEISMRERKALLKYLFTLPTHKDCDCEVIK*
Ga0068873_101732613300010156Freshwater LakeMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPT
Ga0129333_1014430373300010354Freshwater To Marine Saline GradientMLTETTLNKIKYEYQHGGVKQYHPEISMRERKALLKYLFTLPTHKDCDCEVIA*
Ga0129333_1042786713300010354Freshwater To Marine Saline GradientMLTQKTLDKIVYEYQHGGVSQHHPEISFVERRALLKYLFTLPTHKDCDCEVIA*
Ga0129333_1147799213300010354Freshwater To Marine Saline GradientMLTQKTLDKIVYEYQHGGVSQHHPEISFVERRALLKYLFSLPTHKDCDCEVNK*
Ga0129336_1053967313300010370Freshwater To Marine Saline GradientMLSDKTLEKIVFEYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK*I
Ga0102688_157552613300011381Freshwater LakeIHSRKLGDVMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK
Ga0119951_111367513300012000FreshwaterILHSRKLGDVMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK*
Ga0164293_1091650413300013004FreshwaterVVILHSRKLGDVIMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK*
Ga0164292_1102148023300013005FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKNCECAK*
(restricted) Ga0172367_1077186423300013126FreshwaterMLTQNTLDKIVYEYQHDGVSQYHPEISFVERKALLKYLFSLPIHKDCDCEVIA*
(restricted) Ga0172372_1026141123300013132FreshwaterMLTQKTLDKIVYEYQHGGVSQYHPEISFSERKALLKYLFSIPTHKNCDCEVIA*
(restricted) Ga0172376_1008990813300014720FreshwaterMLTQKTLDKIVYEYQHDGIKQYHPEISFVERKALLKYLFSLPIHNDCDCEVIK*
Ga0169931_1073753923300017788FreshwaterMLTQKTLDKIVYEYQHGGVSQYHPEISFSERKALLKYLFSIPTHKNCDCEVIA
Ga0211729_1083648213300020172FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFSERKALLKYLFS
Ga0208232_103519433300020527FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFVERKALLKYLFSLPTHKNCECAK
Ga0208358_103403423300020555FreshwaterMLSEKTLNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK
Ga0208362_105528723300020558FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFS
Ga0213920_105656123300021438FreshwaterMLTEKTLEKIVFEYQHGGVKNYHPEISFAERKALLKYLFSLPTHKDCECAK
Ga0222714_1019057723300021961Estuarine WaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK
Ga0222714_1029682323300021961Estuarine WaterMLSEKTFNKIVFEYQHGGVKNFHPEISLSERKALLKYLFSIPTHKDCECAK
Ga0222713_1015042563300021962Estuarine WaterVIIHSRKLVDVMLSEKTFNKIVFEYQHGGVKNFHPEISFSERKALLKYLFSIPTHKDCECAK
Ga0222712_1006499013300021963Estuarine WaterDKTLEKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECVK
Ga0228703_102334623300022747FreshwaterMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECAK
Ga0228703_105962833300022747FreshwaterMLTEKTLEKIVFEYQHGGVKNHHPEISFAERKALLKYLFSLPTHKDCECAK
Ga0214917_10012925233300022752FreshwaterMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSIPTHKDCECAK
Ga0214917_1005037833300022752FreshwaterMLTEKTLEKIKYEYQHGGVKQYHPEISMSERKALLKYLFSLPTHKDCDCEVIA
Ga0214923_1003201463300023179FreshwaterMLSKNTLEKIVYEYQHGGVKNFHPEISMSERKALLKYLFSIPTHKDCECAK
Ga0255147_106288323300024289FreshwaterMLTQKTLDKIVFQYQHGGVQNYHPEISMVERRALLKYLFTLPTHKDCDCEVIA
Ga0244777_1002237883300024343EstuarineMLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK
Ga0255143_103630033300024500FreshwaterTLEKIKYEYQHGGVKQYHPEISMSERKALLKYLFSLPTHKDCDCEVIA
Ga0208784_117766213300025732AqueousMLLLEVGSNPMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECV
Ga0208783_1012974513300025872AqueousEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK
Ga0255269_107491013300026573FreshwaterMLSEKTLEKIKYEYQHGGVKQYHPEISMSERKALLKYLFSLPTHKNCDCEVIA
Ga0208306_105443423300027214EstuarineERSVCLMLSENTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK
Ga0208811_111361013300027314EstuarineKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK
Ga0255086_100802713300027486FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECV
Ga0255084_103862133300027488FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVKXI
Ga0208788_107006213300027499Deep SubsurfaceMLSQKTFDKIVFDYQHGGVKNFHPEISFSERKALLKYLFSIPTHKDCECAK
Ga0255077_108480813300027529FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPT
Ga0208682_109362913300027531EstuarineTLNKIVFEYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK
Ga0255158_100041293300027541FreshwaterMIEKISYEYQHGGVQSYRYQISTRERKALVKYLLSLPTHTNCDCEVLA
Ga0209770_1037704123300027769Freshwater LakeVVSIHSRKLGGIMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKDCECVK
Ga0209972_1006188843300027793Freshwater LakeMLTQKTLDKIVYEYQHGGVSQHHPEISFVERRALLKYLFSLPTHKDCDCEVIA
Ga0209229_10000004233300027805Freshwater And SedimentMLSEKTFNKIVFDYQHGGVKNFHPEISLSERKALLKYLFSIPTHKDCECAK
Ga0247723_109867723300028025Deep Subsurface SedimentMLSENTLNKIVFEYQHGGVKSYHPEISLSERKALLKYLFSIPTHKDCECVK
Ga0256331_113269423300028286FreshwaterMLSKNTLDKIVYQYQHGGVKQYHPEISMSERKALLKYLFSLPTHKDCDCEVIA
Ga0119945_100817823300029933AquaticMLSEKTFNKIVFEYQHGGVKNFHPEISFSERKALLKYLFSIPTHKDCECAK
Ga0315907_1017511323300031758FreshwaterMLTQKTLDKIIYEYQHGGVSQHHPEISFVERRALLKYLFTLPTHKDCDCEVIA
Ga0315907_1017714613300031758FreshwaterMLTQKTLDKIVYEYQHGGVSQYHPEISFSERKALLKYLFSIPTHKDCDCEVIA
Ga0315907_1065726913300031758FreshwaterVAQFVEIRNRKENEMLSEKTLDKIVFEYQHGGVQSYHNEISMSERKALLKYLFTLPVHKNCDCVK
Ga0315907_1068464913300031758FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDC
Ga0315900_1113392213300031787FreshwaterMLTQKTLDKIVYEYQHGGVSQYHPEISFSERKALLKYLFSIPTH
Ga0315909_1035758323300031857FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK
Ga0315904_1030990513300031951FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSIPTHKDCECAK
Ga0315904_1102781413300031951FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFSERKALLKYLFSIPTHK
Ga0315904_1147277723300031951FreshwaterVEIRNRKENEMLSEKTLDKIVFEYQHGGVQSYHNEISMSERKALLKYLFTLPVHKNCDCV
Ga0316625_10038996723300033418SoilMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYLFSLPTHKDCECVK
Ga0316627_10045245313300033482SoilMLSEKTLEKIVFEYQHGGVKNFHPEISFVERKALLKYL
Ga0334980_0158569_287_4423300033816FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKNCECAK
Ga0334981_0456004_23_2023300033980FreshwaterVVILHSGKLGDVMLSEKTFNKIVWEYQNGGVISNHPELTTYERKALLKYLFALPTKEKN
Ga0335021_0340080_1_1263300034023FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLP
Ga0335019_0209809_3_1253300034066FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSL
Ga0335063_0399117_2_1333300034111FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFVERKALLKYLFSLPTH
Ga0335053_0171750_459_6143300034118FreshwaterMLSEKTFNKIVFDYQHGGVKNFHPEISFAERKALLKYLFSLPTHKNCECVK


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