Metagenome / Metatranscriptome Family F102945

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102945
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	83 residues
Representative Sequence	LPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG
Number of Associated Samples	94
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	95.05 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.287 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.852 % of family members)
Environment Ontology (ENVO)	Unclassified (26.733 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.63% β-sheet: 17.70% Coil/Unstructured: 48.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01979	Amidohydro_1	10.89
PF01717	Meth_synt_2	4.95
PF13147	Obsolete Pfam Family	3.96
PF02518	HATPase_c	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	4.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.29 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	56.44 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	56.44 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	56.44 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	55.45 %
Unclassified	root	N/A	28.71 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	55.45 %
Unclassified	root	N/A	28.71 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01C7SQL	Not Available	507	Open in IMG/M
3300002558\|JGI25385J37094_10133709	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300002561\|JGI25384J37096_10065170	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300002886\|JGI25612J43240_1051732	Not Available	610	Open in IMG/M
3300002912\|JGI25386J43895_10106583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300004267\|Ga0066396_10022656	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	860	Open in IMG/M
3300005167\|Ga0066672_10653578	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	678	Open in IMG/M
3300005171\|Ga0066677_10671170	Not Available	582	Open in IMG/M
3300005174\|Ga0066680_10411406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300005177\|Ga0066690_10853661	Not Available	586	Open in IMG/M
3300005180\|Ga0066685_10233378	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300005186\|Ga0066676_10569087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	768	Open in IMG/M
3300005186\|Ga0066676_10953870	Not Available	573	Open in IMG/M
3300005295\|Ga0065707_10995348	Not Available	540	Open in IMG/M
3300005332\|Ga0066388_107811502	Not Available	536	Open in IMG/M
3300005438\|Ga0070701_10291380	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1000	Open in IMG/M
3300005445\|Ga0070708_101346289	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300005459\|Ga0068867_100364695	Not Available	1209	Open in IMG/M
3300005518\|Ga0070699_100448875	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300005518\|Ga0070699_101298481	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300005526\|Ga0073909_10124807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1047	Open in IMG/M
3300005536\|Ga0070697_101234015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300005540\|Ga0066697_10204659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1173	Open in IMG/M
3300005544\|Ga0070686_100839997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	743	Open in IMG/M
3300005544\|Ga0070686_100845409	Not Available	741	Open in IMG/M
3300005557\|Ga0066704_10426988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	877	Open in IMG/M
3300005557\|Ga0066704_10605142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	704	Open in IMG/M
3300005586\|Ga0066691_10713413	Not Available	593	Open in IMG/M
3300005718\|Ga0068866_10761138	Not Available	670	Open in IMG/M
3300006794\|Ga0066658_10937914	Not Available	501	Open in IMG/M
3300006796\|Ga0066665_11400323	Not Available	541	Open in IMG/M
3300006847\|Ga0075431_100504413	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300006881\|Ga0068865_100734124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	847	Open in IMG/M
3300006969\|Ga0075419_10093675	All Organisms → cellular organisms → Bacteria	1924	Open in IMG/M
3300007255\|Ga0099791_10370121	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	688	Open in IMG/M
3300009012\|Ga0066710_100491799	All Organisms → cellular organisms → Bacteria	1847	Open in IMG/M
3300009100\|Ga0075418_12671217	Not Available	545	Open in IMG/M
3300009813\|Ga0105057_1093788	Not Available	547	Open in IMG/M
3300009815\|Ga0105070_1045001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	810	Open in IMG/M
3300009818\|Ga0105072_1049845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	797	Open in IMG/M
3300010047\|Ga0126382_11780274	Not Available	578	Open in IMG/M
3300010360\|Ga0126372_11079039	Not Available	820	Open in IMG/M
3300010362\|Ga0126377_10576776	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1167	Open in IMG/M
3300010362\|Ga0126377_13225452	Not Available	527	Open in IMG/M
3300010366\|Ga0126379_12787887	Not Available	585	Open in IMG/M
3300010376\|Ga0126381_102082678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	817	Open in IMG/M
3300010398\|Ga0126383_11529448	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	757	Open in IMG/M
3300012205\|Ga0137362_10566824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	980	Open in IMG/M
3300012205\|Ga0137362_10932269	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300012207\|Ga0137381_11386162	Not Available	595	Open in IMG/M
3300012357\|Ga0137384_10410624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1117	Open in IMG/M
3300012948\|Ga0126375_10487808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	915	Open in IMG/M
3300015359\|Ga0134085_10226451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	810	Open in IMG/M
3300015373\|Ga0132257_100906222	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300016294\|Ga0182041_11361528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300016422\|Ga0182039_10527237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1023	Open in IMG/M
3300017659\|Ga0134083_10309191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	672	Open in IMG/M
3300017939\|Ga0187775_10275877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300017947\|Ga0187785_10582050	Not Available	571	Open in IMG/M
3300017997\|Ga0184610_1170576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	720	Open in IMG/M
3300018052\|Ga0184638_1165093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	793	Open in IMG/M
3300018064\|Ga0187773_10127024	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300018433\|Ga0066667_11616218	Not Available	578	Open in IMG/M
3300018468\|Ga0066662_11428060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	717	Open in IMG/M
3300019249\|Ga0184648_1166271	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M
3300025961\|Ga0207712_11044669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300026089\|Ga0207648_10404922	Not Available	1237	Open in IMG/M
3300026297\|Ga0209237_1125087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1070	Open in IMG/M
3300026297\|Ga0209237_1256025	Not Available	537	Open in IMG/M
3300026298\|Ga0209236_1082396	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300026328\|Ga0209802_1231663	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	662	Open in IMG/M
3300026331\|Ga0209267_1024371	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2980	Open in IMG/M
3300026360\|Ga0257173_1043570	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300026542\|Ga0209805_1246258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300027187\|Ga0209869_1040198	Not Available	547	Open in IMG/M
3300027490\|Ga0209899_1039707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1000	Open in IMG/M
3300027654\|Ga0209799_1007748	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300027655\|Ga0209388_1234487	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300027880\|Ga0209481_10100386	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300028380\|Ga0268265_11381644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300031546\|Ga0318538_10774057	Not Available	521	Open in IMG/M
3300031549\|Ga0318571_10176944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	751	Open in IMG/M
3300031561\|Ga0318528_10264086	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	923	Open in IMG/M
3300031668\|Ga0318542_10422066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	690	Open in IMG/M
3300031744\|Ga0306918_10468710	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	985	Open in IMG/M
3300031747\|Ga0318502_10658064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300031764\|Ga0318535_10239595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	812	Open in IMG/M
3300031768\|Ga0318509_10848834	Not Available	505	Open in IMG/M
3300031796\|Ga0318576_10358571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300031821\|Ga0318567_10561377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	648	Open in IMG/M
3300031896\|Ga0318551_10125807	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300031910\|Ga0306923_10009447	All Organisms → cellular organisms → Bacteria	9807	Open in IMG/M
3300031945\|Ga0310913_10866130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	636	Open in IMG/M
3300031981\|Ga0318531_10173530	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	969	Open in IMG/M
3300032054\|Ga0318570_10248260	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	807	Open in IMG/M
3300032174\|Ga0307470_10306855	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1079	Open in IMG/M
3300032179\|Ga0310889_10055378	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300032180\|Ga0307471_100053410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3353	Open in IMG/M
3300032205\|Ga0307472_100865304	Not Available	833	Open in IMG/M
3300033004\|Ga0335084_10424991	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.12%
Host-Associated	Host-Associated	11.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.15%
Plants	Host-Associated → Plants	11.88%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.95%
Sediment	Environmental → Aquatic → Sediment	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.35%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Sand	Environmental → Terrestrial → Soil → Sand	4.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.95%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027187	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_2333840	2035918004	Soil	VATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPGADYDTIRAALREAVGAVYRAWAG
JGI25385J37094_101337091	3300002558	Grasslands Soil	LPGEIAPEPLSALAAILGRELELRDPRLRRGTFSIARFASGTGTAFLGSTPVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG*
JGI25384J37096_100651703	3300002561	Grasslands Soil	PEPLSALAAILGRELELRDPRLRRGTFSIARFASGTGTAFLGSTPVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG*
JGI25612J43240_10517322	3300002886	Grasslands Soil	PDGLVIAADLPREVEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADNDAVRTALRAAVGTIYRAWAR*
JGI25386J43895_101065832	3300002912	Grasslands Soil	PGEIAPEPLSALAAILGRELELRDPRLRRGTFSIARFASGTGTAFLGSTPVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG*
Ga0066396_100226561	3300004267	Tropical Forest Soil	GRELELRGPQRRLGTFPMVQFSSVSGAAFIVSTPIGFIVLLGEPSADGDTIRAALRKMVGNVYRAWTG*
Ga0066672_106535781	3300005167	Soil	SALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG*
Ga0066677_106711702	3300005171	Soil	LPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG*
Ga0066680_104114062	3300005174	Soil	VAPDGLVIAANLPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG*
Ga0066690_108536612	3300005177	Soil	LPREVQAEPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG*
Ga0066685_102333783	3300005180	Soil	LPREVQAEPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDAVRSGLRGALGTVYRAWAG*
Ga0066676_105690872	3300005186	Soil	TGGLVVAPDGLTIAADLPREIEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPRADWDTIRAALRSAVGAVYRAWAR*
Ga0066676_109538701	3300005186	Soil	HIIGGLVVAPDGLVIAANLPREVQAEPLSALVAALGRELELRGPRLRRGTFPTAQFASVSGSAFIGSTSVGYVVLLGEPRADWEAVRSGLRGALGTVYRAWAG*
Ga0065704_103479762	3300005289	Switchgrass Rhizosphere	RGPRLRRGTFPTAEFASVSGSAFLGSTPVGYIVLLGEPRANWDAVRSGLRRAVGTVYRAWAG*
Ga0065707_109953482	3300005295	Switchgrass Rhizosphere	LSALAAALGRELELRGPRLRRGTFPTAEFASVSGSAFLGSTPVGYIVLLGEPRANWDAVRSGLRRAVGTVYRAWAG*
Ga0066388_1078115022	3300005332	Tropical Forest Soil	DGLLIAADLPREVEAEPLSALAAALGRELELRGPRLRRGKFPTAQFASVNGSAFLGSTPVGYIVLLGDPRADWETVRLGLRGVLGTVYRAWAG*
Ga0070701_102913802	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SALAATLGRELELRGPRLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADSDAVRGALRAAVGTVYRAWAR*
Ga0070708_1013462892	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDAVRSGLRGALGTVYRAWAG*
Ga0068867_1003646951	3300005459	Miscanthus Rhizosphere	QAEPLAALVATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG*
Ga0070699_1004488751	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ELERRGPRLRRGTFPMARFASGTGTVFLGSTVVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAR*
Ga0070699_1012984812	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	AALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG*
Ga0073909_101248073	3300005526	Surface Soil	EPEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADSDAVRTALRTAVGTVYRAWAR*
Ga0070697_1012340152	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG*
Ga0066697_102046593	3300005540	Soil	GRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPRADWDTIRAALRSAVGAVYRAWAR*
Ga0070686_1008399971	3300005544	Switchgrass Rhizosphere	VIAADLPREVEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADSDAVRGALRAAVGTVYRAWAR*
Ga0070686_1008454091	3300005544	Switchgrass Rhizosphere	EIQAEPLAALVATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG*
Ga0066704_104269882	3300005557	Soil	IIGGLVVAPDGLVIAANLPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG*
Ga0066704_106051421	3300005557	Soil	PREVQAEPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG*
Ga0066691_107134131	3300005586	Soil	APDGLTIAADLPREIEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPRADWDTIRAALRSAVGAVYRAWAR*
Ga0068866_107611382	3300005718	Miscanthus Rhizosphere	DGLVIAADLPREIQAEPLAALVATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG*
Ga0066658_109379141	3300006794	Soil	ALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG*
Ga0066665_114003232	3300006796	Soil	AGPLSALAAALGREPELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG*
Ga0075431_1005044133	3300006847	Populus Rhizosphere	LAALAATLGRELEMRGPRLRRGTFPMAQFASVSGAVFIGSTPVGYIVLLGEPRADWDAIRAALRRAVGTVYRAWAG*
Ga0068865_1007341241	3300006881	Miscanthus Rhizosphere	REVEAEPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGTAFLGCTPVGFILLLGEPQADNDAVRTALRAAVGTVYRAWAR*
Ga0075419_100936751	3300006969	Populus Rhizosphere	ADLPHEIQAEPLAALAATLGRELEMRGPRLRRGTFPMAQFASVSGAVFIGSTPVGYIVLLGEPRADWDAIRAALRRAVGTVYRAWAG*
Ga0099791_103701212	3300007255	Vadose Zone Soil	QAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFIGSTPVGYVVLLGEPRADWEVVRSGLHGALGTVYRAWAG*
Ga0066710_1004917993	3300009012	Grasslands Soil	APDGLTIAADLPREIEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPRADWDTIRAALRSAVGAVYRAWAR
Ga0075418_126712171	3300009100	Populus Rhizosphere	LIAADLPHEIQAEPLAALAATLGRELEMRGPRLRRGTFPMAQFASVSGAVFIGSTPVGYIVLLGEPRADWDAIRAALRRAVGTVYRAWAG*
Ga0105057_10937881	3300009813	Groundwater Sand	ITGGLIVAPDGLLIAAELPRQLPAEPLSALAATLGRELELRGPQLRRGTFPMAQFLAVDGTAFLASTPVGFIVLLGDASADWDATRGALRTAVGSLHRAWAG*
Ga0105070_10450012	3300009815	Groundwater Sand	LIVAPDGLLIAAQLPGEIAPEPLSALAAILGRELELRGPRLRRGTFPMAQFASGTGIAFLGCTPVGYIVLLGDASADRDTIRSALRAAVGTVHRAWAG*
Ga0105072_10498452	3300009818	Groundwater Sand	ELPREIQAEPLSALAATLGRELELRGPQLRRGTFPMAQFLTGDGTAFVASTPVGFIVLLGDASADWDATRGALRTAVATVHRAWAG*
Ga0126382_117802742	3300010047	Tropical Forest Soil	SALAAALGRELELRGPRLRRRKFPTAQFASVSGSAFLGCTPVGYVVLLGDPRADWETVRLGLRSALGTVYRAWAG*
Ga0126372_110790391	3300010360	Tropical Forest Soil	GGFVVAPDGLLIAADLPREVEAEPLSALAAALGRELELRGPRLRRRKFPTAQFASVSGSAFLGSTPVGYIVLLGDPRADWETVRLGLRGVLGTVYRAWAG*
Ga0126377_105767763	3300010362	Tropical Forest Soil	ELWGPRLRRRKFPTAQFASVSGSAFLGSTPVGYIVLLGDPRADWETVRLGLRGALGTVYRAWAG*
Ga0126377_132254521	3300010362	Tropical Forest Soil	EAEPLSALAATLGRELERRGPRLRRGTFPMAQFASVSGTVFLGSTPVGFIVLLGEPRADWDTIRAALRRAVGTVYRAWAG*
Ga0126379_127878871	3300010366	Tropical Forest Soil	AAALGRELELRGPRLRRRQFPTAQFASVSGSAFLGSTPVGYIVLLGDPRADWETVRLGLRGALGTVYRAWAG*
Ga0126381_1020826782	3300010376	Tropical Forest Soil	VGGLIVAPDGLAIAADLPREVQAEALSALAATLGRELELRGPQRRLGTFPMAQFSSVSGAAFIVSTPIGFIVLLGEPSADGDSIRAALRKMVGNVYRAWTG*
Ga0126383_115294482	3300010398	Tropical Forest Soil	IGGFVVAPDGLLIAADLPREVEAEPLSALAAALGRELELRGPRLRRRQFPTAQFASVRGSAFLGCTPVGYVVLLGDPRADWETVRLGLRGALGTVYRAWAG*
Ga0137362_105668241	3300012205	Vadose Zone Soil	EPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDAVRSGLRGALGTVYRAWAG*
Ga0137362_109322692	3300012205	Vadose Zone Soil	PREVEAEPLSALAATLGRELELSGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADNDAVRTALRAAVGTIYRAWAR*
Ga0137381_113861621	3300012207	Vadose Zone Soil	VGRELERRGPRLRRGAFPTAQFASVSGAAAFMGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG*
Ga0137384_104106241	3300012357	Vadose Zone Soil	SRGGAAVRARRDLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADNDAVRTALRAAVGTIYRAWAR*
Ga0126375_104878081	3300012948	Tropical Forest Soil	ADLPREVEAEPLSALAAALGRELELRGPRLRRRQFPTAQFASVSGSAFLGCTPVGYVVLLGDPRADWETVRLGLRGALGTVYRAWAG*
Ga0134085_102264512	3300015359	Grasslands Soil	GRELELRGPRLRRGTFPMAQFASGTGIAFLGSTPVGYIVLLGDVSADRDTIRSALRAAVGTVHRAWAG*
Ga0132257_1009062223	3300015373	Arabidopsis Rhizosphere	DGLVIAADLPREVEAEPLSALAATLGRELELSGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADSDAVRTALRAAVGTVYRAWAR*
Ga0182041_113615281	3300016294	Soil	PLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0182039_105272373	3300016422	Soil	IAANLPREVEAEPLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0134083_103091911	3300017659	Grasslands Soil	AQMPGKIAPEPLSALAAILGRELELRGPRLRRGTFPMAQFASGTGIAFLGSTPVGYIVLLGDVSADRDTIRSALRAAVGTVHRAWAG
Ga0187775_102758772	3300017939	Tropical Peatland	AEPLSALAATLGRELELRGPKLRRGTFPMAQFASVSGSAFLGSTPVGFIVLLGEPQADNETVRTALRAAVGTVYRAWAR
Ga0187785_105820502	3300017947	Tropical Peatland	LPRGIDAEPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0184610_11705762	3300017997	Groundwater Sediment	GLLIAAQLPGEIVPEPLSALAAILGRELELRGPRLRRGTFLMAQFASGTGIAFLGSTPVGYIVLLGDASADRDTIRSALRSAVGTVHRAWAG
Ga0184638_11650932	3300018052	Groundwater Sediment	ELRGPRLRRGTFPMAQFASGTGIAFLGSTPVGYIVLLGDARADRDTIRSALLATVGTVHRAWAG
Ga0187773_101270241	3300018064	Tropical Peatland	ATLGRELELRGPKLRRGTFPMAQFASVGGTAFLGSTPVGFIVLLGEPQADNETVRTALRAAVGTVYRAWAR
Ga0066667_116162181	3300018433	Grasslands Soil	STGGLIVAPDGLLIAAQLASGIAAEPLSALAATLGRQLELRGPQLRRGTFPMAQFATAQGAAFLGSTPVGFIVLLGDASASWDVVRGALRAAVGTIHRAWAG
Ga0066662_114280602	3300018468	Grasslands Soil	ANLPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG
Ga0184648_11662711	3300019249	Groundwater Sediment	PEPLSALAAILGRELELRGPRLRRGTFPMAQFASGTGIAFLGSTPVGYIVLLGDARADRDTIRSALRAAVGTVHRAWAG
Ga0207712_110446691	3300025961	Switchgrass Rhizosphere	HITGGLVVAPDGLVIAADLPREVEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADSDAVRGALRAAVGTVYRAWAR
Ga0207648_104049222	3300026089	Miscanthus Rhizosphere	IAADLLREIQAEPLAALVATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG
Ga0209237_11250873	3300026297	Grasslands Soil	IAAEPLSALAATLGRQLELRGPQLRRGTFPMAHFATAQGTAFLGSTPVGFIVLLGDTSASWDVVRGALRAAVGTIHRAWAG
Ga0209237_12560252	3300026297	Grasslands Soil	VAPDGLVIAANLPREVQAEPLSALAAALGRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG
Ga0209236_10823961	3300026298	Grasslands Soil	APEPLSALAAILGRELELRDPRLRRGTFSIARFASGTGTAFLGSTPVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG
Ga0209802_12316632	3300026328	Soil	GRELELRGPRLRRGTFPTAQFASVSGSAFLGSTPVGYIVLLGEPRADWDSVRSGLRGALGTVYRAWAG
Ga0209267_10243714	3300026331	Soil	EVQAEPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG
Ga0257173_10435702	3300026360	Soil	AQLPREIAPEPLSALAALLGRELELRRPRLRRGTFPMAQFTSGTGIAFLGSTPVGYIVLLGDASADRDTIRSALRAAVGTVHRAWAG
Ga0209805_12462581	3300026542	Soil	DGLVIAANLPREVQAEPLSALVAALGRELELRGPRLRRGTFPTAVFASVSGSAFLGNTPVGYIVLLGEPRADWDVVRSGLRGALGTVYRAWAG
Ga0209869_10401982	3300027187	Groundwater Sand	PDGLLIAAQLPGEIAPEPLSALAAMLGRELERRGPRLRRGTFPMARFASGTGTVFLASTLVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG
Ga0209899_10397073	3300027490	Groundwater Sand	LLIAAQLPGEIAPEPLSALAAILGRELELRGPRLRRGTFPMAQFASGTGIAFLGCTPVGYIVLLGDASADRDTIRSALRAAVGTVHRAWAG
Ga0209799_10077481	3300027654	Tropical Forest Soil	EVQAEALSALAATLGRELELRGPQRRRGTFPMAQFSSVSGAAFIVSTPIGFIVLLGEPSADGDAIRAALRKTVGSVYRAWTG
Ga0209388_12344872	3300027655	Vadose Zone Soil	GRELELRDPRLRRGTFSIARFASGTGTAFLGSTPVGYIVLLGDASADWDTIRSALRAAVGTVHRAWAG
Ga0209481_101003863	3300027880	Populus Rhizosphere	LPHEIQAEPLAALAATLGRELEMRGPRLRRGTFPMAQFASVSGAVFIGSTPVGYIVLLGEPRADWDAIRAALRRAVGTVYRAWAG
Ga0268265_113816442	3300028380	Switchgrass Rhizosphere	IATDLPSEIDAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGSAFLGSTPVGFIVLLGEPRADWEIIRTALRRAVGTVFRAWAG
Ga0318538_107740571	3300031546	Soil	IGGLVVAPDGLLIAANLPREVEAEPLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318571_101769442	3300031549	Soil	LGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318528_102640862	3300031561	Soil	APDGLLIAANLPREVEAEPLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318542_104220661	3300031668	Soil	ALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0306918_104687101	3300031744	Soil	GGLVVAPDGLVIAADLPRGIDAEPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0318502_106580641	3300031747	Soil	LELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318535_102395952	3300031764	Soil	LAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0318509_108488342	3300031768	Soil	TLGLELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0318576_103585711	3300031796	Soil	EPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0318567_105613772	3300031821	Soil	EAETLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318551_101258071	3300031896	Soil	MIGGLVVAPDGLLIAANLPREVEAEPLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0306923_100094479	3300031910	Soil	LSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0310913_108661302	3300031945	Soil	GIDAEPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0318531_101735302	3300031981	Soil	EAEPLSALAAALGRELELRGPRLRRGTFPTAHFASVSGSAFLGSTPVGYIVLLGEPTADWEAVRSRLRVALGTIYRAWAG
Ga0318570_102482601	3300032054	Soil	AEPLSALAATLGRELELRGPRLRRGTFPMAQFASVSGIVFLGSTPVGFIVLLGEPQADTDAVRTALRAAVGTVYRAWAR
Ga0307470_103068553	3300032174	Hardwood Forest Soil	ALAATLGRELELRGPQLRRGTFPMAQFASVSGTAFLGSTPVGFIVLLGEPQADNDAVRTALRAAVGTVYRAWAR
Ga0310889_100553781	3300032179	Soil	ELRGPRLRRGTFPMAQFASVSGAVFLGSTPVGFIVLLGEPRAEWETIRAALRRAVGSVYRAWAG
Ga0307471_1000534101	3300032180	Hardwood Forest Soil	AEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGAAFLGSTPVGFIVLLGEPQADWDRIRAALRSAVGAVYRAWAR
Ga0307472_1008653041	3300032205	Hardwood Forest Soil	LVIAADLPREIQAEPLAALVATVGRELERRGPRLRRGAFPTAQFASVSGAAAFIGSTPVGFIVLLGGPRADYDTIRAALREAVGAVYRAWAG
Ga0335084_104249911	3300033004	Soil	GGLVVAPDGLVIAADLPREVEAEPLSALAATLGRELELRGPQLRRGTFPMAQFASVSGSAFLGSTPVGFILLLGEPQADNDTVRGALRAAVGTVYRAWAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102945

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences