Metagenome / Metatranscriptome Family F102912

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102912
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	45 residues
Representative Sequence	MKALIAALALVTLIASPTFAQSYPGEHQEQTNVSPASPNFGDNGY
Number of Associated Samples	87
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.25 %
% of genes near scaffold ends (potentially truncated)	40.59 %
% of genes from short scaffolds (< 2000 bps)	84.16 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.267 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (15.842 % of family members)
Environment Ontology (ENVO)	Unclassified (26.733 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.347 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.44% β-sheet: 0.00% Coil/Unstructured: 83.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00196	GerE	6.93
PF00072	Response_reg	3.96
PF12697	Abhydrolase_6	2.97
PF02738	MoCoBD_1	2.97
PF07690	MFS_1	1.98
PF00111	Fer2	1.98
PF01799	Fer2_2	1.98
PF03401	TctC	0.99
PF13676	TIR_2	0.99
PF02627	CMD	0.99
PF00873	ACR_tran	0.99
PF09694	Gcw_chp	0.99
PF04545	Sigma70_r4	0.99
PF13533	Biotin_lipoyl_2	0.99
PF00529	CusB_dom_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.99
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.99
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.27 %
Unclassified	root	N/A	26.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.27 %
Unclassified	root	N/A	26.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.27 %
Unclassified	root	N/A	26.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.36 %
Unclassified	root	N/A	26.73 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.42 %
Unclassified	root	N/A	26.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	37.62 %
Unclassified	root	N/A	26.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	13.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.98 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.99 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	13.86 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig69788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	721	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0483487	Not Available	665	Open in IMG/M
3300000156\|NODE_c0526990	Not Available	1136	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10022564	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300001661\|JGI12053J15887_10127307	All Organisms → cellular organisms → Bacteria → Proteobacteria	1357	Open in IMG/M
3300001661\|JGI12053J15887_10288905	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005166\|Ga0066674_10308164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300005167\|Ga0066672_10308796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1029	Open in IMG/M
3300005171\|Ga0066677_10501047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300005174\|Ga0066680_10548983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300005179\|Ga0066684_10531300	Not Available	789	Open in IMG/M
3300005180\|Ga0066685_10413070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	937	Open in IMG/M
3300005180\|Ga0066685_10935046	Not Available	577	Open in IMG/M
3300005332\|Ga0066388_100008641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7663	Open in IMG/M
3300005332\|Ga0066388_100179739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2723	Open in IMG/M
3300005332\|Ga0066388_101006327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1397	Open in IMG/M
3300005363\|Ga0008090_13484760	Not Available	981	Open in IMG/M
3300005454\|Ga0066687_10580009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300005471\|Ga0070698_100326591	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300005518\|Ga0070699_100012348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7369	Open in IMG/M
3300005549\|Ga0070704_101688691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300005559\|Ga0066700_10311962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1110	Open in IMG/M
3300005560\|Ga0066670_10189586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300005561\|Ga0066699_11139711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300005713\|Ga0066905_100050681	All Organisms → cellular organisms → Bacteria → Proteobacteria	2538	Open in IMG/M
3300005764\|Ga0066903_100229135	All Organisms → cellular organisms → Bacteria → Proteobacteria	2830	Open in IMG/M
3300005764\|Ga0066903_101096398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1467	Open in IMG/M
3300005764\|Ga0066903_102244698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1053	Open in IMG/M
3300005764\|Ga0066903_106279983	Not Available	621	Open in IMG/M
3300005937\|Ga0081455_10038607	All Organisms → cellular organisms → Bacteria	4227	Open in IMG/M
3300005937\|Ga0081455_10425402	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300005985\|Ga0081539_10462426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	525	Open in IMG/M
3300006796\|Ga0066665_11057662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300006844\|Ga0075428_102247037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	562	Open in IMG/M
3300009100\|Ga0075418_13052923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300009792\|Ga0126374_10406723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	953	Open in IMG/M
3300009792\|Ga0126374_10851229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	702	Open in IMG/M
3300010043\|Ga0126380_10071840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1967	Open in IMG/M
3300010043\|Ga0126380_10567645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	886	Open in IMG/M
3300010046\|Ga0126384_10601435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	963	Open in IMG/M
3300010046\|Ga0126384_11116108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300010117\|Ga0127449_1081009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300010127\|Ga0127489_1133699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300010358\|Ga0126370_10859032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300010362\|Ga0126377_12749658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	567	Open in IMG/M
3300010366\|Ga0126379_13503871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	526	Open in IMG/M
3300010376\|Ga0126381_102444464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300010398\|Ga0126383_10735907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1066	Open in IMG/M
3300012201\|Ga0137365_10505118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300012204\|Ga0137374_10305137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1304	Open in IMG/M
3300012208\|Ga0137376_10460405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300012349\|Ga0137387_10818344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300012350\|Ga0137372_10495228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	910	Open in IMG/M
3300012356\|Ga0137371_11060333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300012360\|Ga0137375_10823816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300012362\|Ga0137361_10089026	All Organisms → cellular organisms → Bacteria	2658	Open in IMG/M
3300012377\|Ga0134029_1124484	Not Available	513	Open in IMG/M
3300012924\|Ga0137413_11619982	Not Available	530	Open in IMG/M
3300012948\|Ga0126375_10441120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	954	Open in IMG/M
3300014157\|Ga0134078_10644474	Not Available	513	Open in IMG/M
3300015359\|Ga0134085_10336392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300015371\|Ga0132258_10031756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11810	Open in IMG/M
3300015374\|Ga0132255_103105065	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300016270\|Ga0182036_11187067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300016319\|Ga0182033_11290040	Not Available	656	Open in IMG/M
3300016371\|Ga0182034_11826014	Not Available	536	Open in IMG/M
3300016404\|Ga0182037_11454138	Not Available	607	Open in IMG/M
3300018028\|Ga0184608_10532302	Not Available	501	Open in IMG/M
3300018067\|Ga0184611_1228691	Not Available	661	Open in IMG/M
3300018431\|Ga0066655_10047743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2191	Open in IMG/M
3300018433\|Ga0066667_10319737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1218	Open in IMG/M
3300018433\|Ga0066667_10562514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300018468\|Ga0066662_10055549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2554	Open in IMG/M
3300018468\|Ga0066662_11805864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300021560\|Ga0126371_12138493	Not Available	675	Open in IMG/M
3300026327\|Ga0209266_1159465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300026528\|Ga0209378_1241054	Not Available	574	Open in IMG/M
3300026538\|Ga0209056_10385067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	882	Open in IMG/M
3300027381\|Ga0208983_1054003	Not Available	774	Open in IMG/M
3300027616\|Ga0209106_1155839	Not Available	508	Open in IMG/M
3300027663\|Ga0208990_1016809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2412	Open in IMG/M
3300027874\|Ga0209465_10250192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	887	Open in IMG/M
3300027903\|Ga0209488_11093603	Not Available	545	Open in IMG/M
3300028712\|Ga0307285_10010538	All Organisms → cellular organisms → Bacteria → Proteobacteria	1983	Open in IMG/M
3300028875\|Ga0307289_10206015	Not Available	809	Open in IMG/M
3300028878\|Ga0307278_10101685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1292	Open in IMG/M
3300031543\|Ga0318516_10167388	Not Available	1264	Open in IMG/M
3300031545\|Ga0318541_10414534	Not Available	753	Open in IMG/M
3300031681\|Ga0318572_10218537	Not Available	1116	Open in IMG/M
3300031768\|Ga0318509_10714493	Not Available	556	Open in IMG/M
3300031771\|Ga0318546_10915770	Not Available	617	Open in IMG/M
3300031879\|Ga0306919_10062124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2515	Open in IMG/M
3300031890\|Ga0306925_10091296	All Organisms → cellular organisms → Bacteria → Proteobacteria	3233	Open in IMG/M
3300031894\|Ga0318522_10005466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3572	Open in IMG/M
3300031896\|Ga0318551_10898197	Not Available	517	Open in IMG/M
3300031945\|Ga0310913_10334963	Not Available	1070	Open in IMG/M
3300031947\|Ga0310909_10091990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2424	Open in IMG/M
3300031947\|Ga0310909_10097596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2357	Open in IMG/M
3300032043\|Ga0318556_10193111	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300032055\|Ga0318575_10324952	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300032261\|Ga0306920_100604537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1622	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.08%
Host-Associated	Host-Associated	6.93%
Engineered	Engineered	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.10%
Plants	Host-Associated → Plants	6.93%
Aquatic	Environmental → Aquatic	1.98%
Solid Waste	Engineered → Solid Waste	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.10%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.95%
Sediment	Environmental → Aquatic → Sediment	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Grass	Engineered → Solid Waste → Grass	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.28%
Loam	Environmental → Terrestrial → Soil → Loam	17.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.99%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010127	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012377	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_12995070	2124908045	Soil	FVIWRGIMKALIAAIALVTLIASPTFAQSYPNEQPEQTNVSPASPNFGDNGY
ICChiseqgaiiDRAFT_04834872	3300000033	Soil	MKALIAALALVTLIASPTFAQSYPNEQPEQTNVSPASPNFGDNGY*
NODE_05269901	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MKTILAALALVTLIASPTFAQSVPTGDLEQAALVSPSSPNFGDNGY*DQ
AF_2010_repII_A1DRAFT_100225641	3300000597	Forest Soil	MKTILAALALVTLIASPTFAQSVPTGDLEQAALVSPSSPNFGDNGY*
JGI12053J15887_101273072	3300001661	Forest Soil	MKALITALALLTLVAGPTFAQSVYSGEQGTAHNVSPSSSDFGDNGY*
JGI12053J15887_102889053	3300001661	Forest Soil	MKALIAALALVTLIAGPTFAQSAYTGEHQPVYNASPASPDFGDNGN*
Ga0066674_103081642	3300005166	Soil	MKALIAALALVTLIASPSFAQWYPGEHVEQSNVSPASPNFGDNGY*
Ga0066672_103087962	3300005167	Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0066677_105010473	3300005171	Soil	EPRTIVRKWRGIMKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0066680_105489831	3300005174	Soil	NNMKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0066684_105313003	3300005179	Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFG
Ga0066685_104130703	3300005180	Soil	MKALIAALALVTLIASPSFAPSYPGEHVEQSNVSPASPNFGDNGY*
Ga0066685_109350461	3300005180	Soil	MKALIAALALVTLIASPTFARSVPSGHWEQTNVSPSSPNFGDNGY*
Ga0066388_1000086413	3300005332	Tropical Forest Soil	MKTILAALALVALIASPAFAQSVPSAHWEQTNVSPSSPDFGDNGY*
Ga0066388_1001797394	3300005332	Tropical Forest Soil	MKALIAALALVTLLASPTFAQSYPGEHQEQTNVSPASPDFGDNGY*
Ga0066388_1010063272	3300005332	Tropical Forest Soil	MKALIAALALVTLIASPTFAQAVPGEHQEQTNVSPASPNFGDNGY*
Ga0008090_134847601	3300005363	Tropical Rainforest Soil	MKAILAALALVTLIASPTFAQSVPTGDLEQAALVSPSSPNFGDNGY*
Ga0066687_105800091	3300005454	Soil	MKALIAALALVTLIASPTFAQSVPSGHWEQTNVSPSNPNFGDNGY*
Ga0070698_1003265912	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKAFITALALLTLVAGQTFAQSAYAGEQGVAHNVSPSSSDFGDNGY*
Ga0070699_1000123489	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKALIAALALVTLIASPTLAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0070704_1016886911	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LIAALALVTLIASPTLAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0066700_103119622	3300005559	Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNGSPASPNFGDNGY*
Ga0066670_101895862	3300005560	Soil	MKALIAALALVTLIASPTFAQSVPSGHWEQTNVSPSSPNFGDNGY*
Ga0066699_111397111	3300005561	Soil	AFGNNGYSNRRTIMKALITALALVTLFASPSFAQSYPGEHQEQTNVSPASPNFGDNGY*
Ga0066905_1000506814	3300005713	Tropical Forest Soil	MKALIAALALVTLLASPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0066903_1002291352	3300005764	Tropical Forest Soil	MKALIAALALVTLIASPTFAQSVYSGEHQEQTNVSPASPDFGDNGY*
Ga0066903_1010963983	3300005764	Tropical Forest Soil	MKAILAAFALVTLIATPTFAQSVPGAHWEQAALVSPSSPDFGDNGY*
Ga0066903_1022446981	3300005764	Tropical Forest Soil	TWRSIMKAILAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0066903_1062799832	3300005764	Tropical Forest Soil	MKAILAALALVTLIATPTFAQSVPTGDLEQAALVSPSSPDFG
Ga0081455_100386074	3300005937	Tabebuia Heterophylla Rhizosphere	MKAFITALALLTMIAGPTFAQSVYSGEQPVAHNVSPSSSDFGDNGY*
Ga0081455_104254022	3300005937	Tabebuia Heterophylla Rhizosphere	MKAFIAALALVTLLTGPTFAQSAAYSHEHEPAHDVSPASPDFGDNGN*
Ga0081539_104624261	3300005985	Tabebuia Heterophylla Rhizosphere	MKALITALALVTLIAGPTFAQSAAYSHEHEPAHDVSPANQDFGDNGN*
Ga0066665_110576623	3300006796	Soil	KWRTNMKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0075428_1022470372	3300006844	Populus Rhizosphere	LIAALALVTLIASPTFAQSYPNEQPEQTNVSPASPNFGDNGY*
Ga0075418_130529232	3300009100	Populus Rhizosphere	MKALIAALALVTLIASPTFAQSYPNEQPEQTNVSPASP
Ga0126374_104067232	3300009792	Tropical Forest Soil	MKALIAALALATLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0126374_108512291	3300009792	Tropical Forest Soil	MKALIAALALVTLLAGPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0126380_100718404	3300010043	Tropical Forest Soil	MKAILAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0126380_105676453	3300010043	Tropical Forest Soil	MKALIAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY*
Ga0126384_106014351	3300010046	Tropical Forest Soil	GQSSATWRSIMKALIAALALVTLIASPSFAQSYPGEHQEQTNVSPASPNFGDNGY*
Ga0126384_111161082	3300010046	Tropical Forest Soil	MKAFVAALALVTLLASPTFAQSYPGEHQEQTNVSPASPDFGDNGY*
Ga0127449_10810092	3300010117	Grasslands Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFWDNGY*
Ga0127489_11336991	3300010127	Grasslands Soil	AALALVTLIASPSFAQWYPGEHVEQSNVSPASPNFGNNGY*
Ga0126370_108590321	3300010358	Tropical Forest Soil	MKALIAALALVTLIASPTFAQSYPGEHQEQTNVSPASPNFGDNGY*
Ga0126377_127496582	3300010362	Tropical Forest Soil	MKALIAALALVTLIASPTFAQSYPGEQPEQINMSPASPNFGDNGY*
Ga0126379_135038711	3300010366	Tropical Forest Soil	MKALIAAFALVTLIASPTFAQSYPGEHQEQTNVSPASPNFGDNGY*
Ga0126381_1024444641	3300010376	Tropical Forest Soil	MKALIAALALVTLLASPTFAQSYPGEHQEQTNVSPASPDF
Ga0126383_107359072	3300010398	Tropical Forest Soil	MKTLIAALALVTLLGNPTFAQSYPGEHQEQTPASPDFGDNGY*
Ga0137365_105051181	3300012201	Vadose Zone Soil	MKALIAALALVTLIASPSFAQWYPGEQQADVSPASPNFGDNGY*
Ga0137374_103051372	3300012204	Vadose Zone Soil	MKALIAAIALVTLIASPTFAQSYPNEQPEQTNVSPASPNFGDNGY*
Ga0137376_104604052	3300012208	Vadose Zone Soil	MKALITALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0137387_108183441	3300012349	Vadose Zone Soil	MKALIAALALVTLIASPTFAQSYPGELPEQTNVSPASPNFGDNGY*
Ga0137372_104952281	3300012350	Vadose Zone Soil	MKALIAALALVTLIASPTLAQSYPNEQPEQTNVSPASPNFGDNGY*
Ga0137371_110603333	3300012356	Vadose Zone Soil	LTWRTIMKALIAALALVTLIASPSFAQWYPGEHVEQSNVSPASPNFGDNGY*
Ga0137375_108238161	3300012360	Vadose Zone Soil	MKALIAAIALVTLIASPTFAQSYPNEQPEQTNVSPASPNFG
Ga0137361_100890264	3300012362	Vadose Zone Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDN
Ga0134029_11244841	3300012377	Grasslands Soil	MKALIAALALVTLIARPSFAQSYPGEHVEQSNVSPASPNFGDNGY*
Ga0137413_116199821	3300012924	Vadose Zone Soil	MKTLIAALALVTLIAGPTFAQSASTGEHQPVYNASPASPDFGDNGN*
Ga0126375_104411201	3300012948	Tropical Forest Soil	MKALIAALALVTLIASPTFAQSYPGEQPEQTNMSPASPNFGDNGY*
Ga0134078_106444741	3300014157	Grasslands Soil	MKALIAALALVTLIASPSFAPSYPGEHVEQSNVSPASPNFGD
Ga0134085_103363922	3300015359	Grasslands Soil	MKALIAALALVTLIASPSFAPSYPGEHVEQSNVSPASPNFWDNGY*
Ga0132258_100317564	3300015371	Arabidopsis Rhizosphere	MKALITALALVTLIASPSFAQSYPGEHQEQTNVSPASPNFGDNGY*
Ga0132255_1031050651	3300015374	Arabidopsis Rhizosphere	MKAIFAALALVTLISSPTFAQSIPAGDLEQAALVSPSSPNFGDN
Ga0182036_111870671	3300016270	Soil	MKALIAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY
Ga0182033_112900401	3300016319	Soil	KRPLTWRGAMKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0182034_118260141	3300016371	Soil	MKAILAALALVTLIASPTFAQSVSTEHQTNVSPSSSDFGDNGY
Ga0182037_114541381	3300016404	Soil	MKAILAALALVTLIASPTFAQSYPGEQPEQTNVSPA
Ga0184608_105323022	3300018028	Groundwater Sediment	AALALVTLIAGPTFAQSAYTGEQQPVYNASPASPDFGDNGN
Ga0184611_12286912	3300018067	Groundwater Sediment	MKALITALALLTLVAGPTFAQSVYSGEQGTAHNVSPSSSDFGDNGY
Ga0066655_100477432	3300018431	Grasslands Soil	MKALIAALALVTLIASPSFAQWYPGEHVEQSNVSPASPNFGDNGY
Ga0066667_103197372	3300018433	Grasslands Soil	MKALIAALALVTLIASPSFAQWYPGEQQANVSPASPNFGDNGY
Ga0066667_105625141	3300018433	Grasslands Soil	MKALIAALALVTLIASPSFAQSYPGEHVEQSNVSPASPNFGDNGY
Ga0066662_100555492	3300018468	Grasslands Soil	MKALIAALALVTLIASPSFAPSYPGEHVEQSNVSPASPNFGDNGY
Ga0066662_118058642	3300018468	Grasslands Soil	MKALIAALALVTLIASPTLAQSYPGEQPEQTNVSPASPNFGDNGY
Ga0126371_121384931	3300021560	Tropical Forest Soil	MKAILAALALVTLIASPTFAQSYPGEQPEQTNVSPASPSFGDNGY
Ga0209266_11594653	3300026327	Soil	TWRTIMKALIAALALVTLIASPSFAQWYPGEHVEQSNVSPASPNFGDNGY
Ga0209378_12410541	3300026528	Soil	MKALIAALALVTLIASPSFAQWYPGEHVEQSNVSPASPNF
Ga0209056_103850671	3300026538	Soil	RNNMKALIAALALVTLIASPSFAQWYPGEQQANVSPASPNFGDNGY
Ga0208983_10540031	3300027381	Forest Soil	MKALIAALALVTLIAGPTFAQSASTGEHQPVYNASPASPDFGDNGN
Ga0209106_11558392	3300027616	Forest Soil	ALVTLIAGPTFAQSASTGEHQPVYNASPASPDFGDNGN
Ga0208990_10168095	3300027663	Forest Soil	MKTLIAALALVTLIAGPTFAQSASTGEHQPVYNASPASPDFGDNGN
Ga0209465_102501921	3300027874	Tropical Forest Soil	WRSIMKALIAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY
Ga0209488_110936032	3300027903	Vadose Zone Soil	MKALIAALALVTLIASPTFAQTAATDEPAVQTNVSPASPTFGDNGY
Ga0307285_100105382	3300028712	Soil	MKALITALALLTLVAGPTFAQSVYSDEQGTAHNVSPSSSDFGDNGY
Ga0307289_102060151	3300028875	Soil	MKALIAALALVTLIAGPTFAQSAYTGEQQPVYNASPASPDFGDNGN
Ga0307278_101016852	3300028878	Soil	MKALIAALALVTLIASPTFAQSYPGEHQEQTNVSPASPNFGDNGY
Ga0318516_101673883	3300031543	Soil	MKAILAALALVTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0318541_104145342	3300031545	Soil	MKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSSNFGDNGY
Ga0318572_102185373	3300031681	Soil	EGAMKAILAALALVTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0318509_107144932	3300031768	Soil	VTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0318546_109157702	3300031771	Soil	MKALIAALALVTLLASPTFAQSYSGEHQEQTNVSPASPDFGDNGY
Ga0306919_100621242	3300031879	Soil	MKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0306925_100912965	3300031890	Soil	FAALALVTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0318522_100054661	3300031894	Soil	MKAIFAALALVTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0318551_108981971	3300031896	Soil	WRGAMKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSSNFGDNGY
Ga0310913_103349633	3300031945	Soil	LALVTLIASPTFAQSAPSAHWEQTNVSPSSPNFGDNGY
Ga0310909_100919903	3300031947	Soil	MKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSS
Ga0310909_100975964	3300031947	Soil	LVTLIATPTFAQSAPSAHWEQTNVSPSSSNFGDNGY
Ga0318556_101931111	3300032043	Soil	MKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSSNFGDNG
Ga0318575_103249522	3300032055	Soil	MKAILAALALVTLIATPTFAQSAPSAHWEQTNVSPSSSNFGD
Ga0306920_1006045371	3300032261	Soil	QSSVTWRSIMKAILAALALVTLIASPTFAQSYPGEQPEQTNVSPASPNFGDNGY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102912

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences