NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102789

Metagenome / Metatranscriptome Family F102789

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102789
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 48 residues
Representative Sequence MVVTKREFQEIIDQMNGILTKLDQRIKELEEAKPSRTTKTTKSQEKT
Number of Associated Samples 52
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.16 %
% of genes near scaffold ends (potentially truncated) 18.81 %
% of genes from short scaffolds (< 2000 bps) 65.35 %
Associated GOLD sequencing projects 44
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (46.535 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine
(25.743 % of family members)
Environment Ontology (ENVO) Unclassified
(54.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.129 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.00%    β-sheet: 0.00%    Coil/Unstructured: 60.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF12236Head-tail_con 18.81
PF09723Zn-ribbon_8 8.91
PF03237Terminase_6N 5.94
PF05065Phage_capsid 3.96
PF11651P22_CoatProtein 1.98
PF16778Phage_tail_APC 0.99
PF00959Phage_lysozyme 0.99
PF02867Ribonuc_red_lgC 0.99
PF01476LysM 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 3.96
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.47 %
UnclassifiedrootN/A46.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10001714Not Available13155Open in IMG/M
3300000947|BBAY92_10000750Not Available7966Open in IMG/M
3300000947|BBAY92_10003971All Organisms → Viruses → Predicted Viral3829Open in IMG/M
3300000947|BBAY92_10111020Not Available727Open in IMG/M
3300003409|JGI26088J50261_1014282Not Available2375Open in IMG/M
3300003409|JGI26088J50261_1014677All Organisms → Viruses → Predicted Viral2318Open in IMG/M
3300003409|JGI26088J50261_1024619All Organisms → Viruses → Predicted Viral1423Open in IMG/M
3300003409|JGI26088J50261_1027766All Organisms → Viruses → Predicted Viral1268Open in IMG/M
3300003409|JGI26088J50261_1030346All Organisms → Viruses → Predicted Viral1170Open in IMG/M
3300003409|JGI26088J50261_1040053Not Available919Open in IMG/M
3300003410|JGI26086J50260_1018291All Organisms → Viruses → Predicted Viral2233Open in IMG/M
3300003410|JGI26086J50260_1059628Not Available846Open in IMG/M
3300003410|JGI26086J50260_1067667Not Available771Open in IMG/M
3300003410|JGI26086J50260_1078440All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon692Open in IMG/M
3300003410|JGI26086J50260_1101528Not Available576Open in IMG/M
3300003410|JGI26086J50260_1103614All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon568Open in IMG/M
3300005512|Ga0074648_1060427All Organisms → Viruses → Predicted Viral1560Open in IMG/M
3300006025|Ga0075474_10041531All Organisms → Viruses → Predicted Viral1580Open in IMG/M
3300006026|Ga0075478_10111228Not Available870Open in IMG/M
3300006810|Ga0070754_10001444Not Available19018Open in IMG/M
3300006810|Ga0070754_10019522All Organisms → Viruses → Predicted Viral3991Open in IMG/M
3300006810|Ga0070754_10032840All Organisms → Viruses → Predicted Viral2880Open in IMG/M
3300006810|Ga0070754_10042203Not Available2464Open in IMG/M
3300006916|Ga0070750_10107292All Organisms → Viruses → Predicted Viral1290Open in IMG/M
3300006916|Ga0070750_10167950Not Available986Open in IMG/M
3300006919|Ga0070746_10377843All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon638Open in IMG/M
3300006919|Ga0070746_10425029Not Available592Open in IMG/M
3300007344|Ga0070745_1309538All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon561Open in IMG/M
3300007345|Ga0070752_1026294All Organisms → Viruses → Predicted Viral2874Open in IMG/M
3300007345|Ga0070752_1081219All Organisms → Viruses → Predicted Viral1417Open in IMG/M
3300007539|Ga0099849_1233867Not Available681Open in IMG/M
3300007609|Ga0102945_1036622All Organisms → Viruses → Predicted Viral1005Open in IMG/M
3300011258|Ga0151677_1068349Not Available999Open in IMG/M
3300016724|Ga0182048_1069319All Organisms → Viruses → Predicted Viral2064Open in IMG/M
3300016726|Ga0182045_1086216All Organisms → Viruses → Predicted Viral2449Open in IMG/M
3300016727|Ga0182051_1246357All Organisms → Viruses → Predicted Viral1566Open in IMG/M
3300016734|Ga0182092_1080932All Organisms → Viruses → Predicted Viral2450Open in IMG/M
3300016791|Ga0182095_1378152All Organisms → Viruses → Predicted Viral1808Open in IMG/M
3300016791|Ga0182095_1644013All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon698Open in IMG/M
3300016797|Ga0182090_1337231Not Available602Open in IMG/M
3300017770|Ga0187217_1160066Not Available752Open in IMG/M
3300017824|Ga0181552_10001364Not Available18558Open in IMG/M
3300017824|Ga0181552_10043621All Organisms → Viruses → Predicted Viral2668Open in IMG/M
3300017824|Ga0181552_10075223All Organisms → Viruses → Predicted Viral1920Open in IMG/M
3300017950|Ga0181607_10044594All Organisms → Viruses → Predicted Viral3059Open in IMG/M
3300017950|Ga0181607_10052681All Organisms → Viruses → Predicted Viral2752Open in IMG/M
3300017950|Ga0181607_10072758All Organisms → Viruses → Predicted Viral2244Open in IMG/M
3300017950|Ga0181607_10086548All Organisms → Viruses → Predicted Viral2009Open in IMG/M
3300017950|Ga0181607_10405719All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon743Open in IMG/M
3300017950|Ga0181607_10406560All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon742Open in IMG/M
3300017950|Ga0181607_10657043Not Available547Open in IMG/M
3300017951|Ga0181577_10039969All Organisms → Viruses → Predicted Viral3372Open in IMG/M
3300018417|Ga0181558_10319709Not Available842Open in IMG/M
3300019765|Ga0194024_1052078Not Available908Open in IMG/M
3300020013|Ga0182086_1153165All Organisms → Viruses → Predicted Viral1524Open in IMG/M
3300020053|Ga0181595_10097549All Organisms → Viruses → Predicted Viral1445Open in IMG/M
3300020174|Ga0181603_10092716All Organisms → Viruses → Predicted Viral1419Open in IMG/M
3300020174|Ga0181603_10106370All Organisms → Viruses → Predicted Viral1288Open in IMG/M
3300021958|Ga0222718_10007224Not Available8698Open in IMG/M
3300021958|Ga0222718_10058854All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2402Open in IMG/M
3300021958|Ga0222718_10160494All Organisms → Viruses → Predicted Viral1260Open in IMG/M
3300021958|Ga0222718_10573000Not Available534Open in IMG/M
3300021964|Ga0222719_10007913Not Available8939Open in IMG/M
3300021964|Ga0222719_10274775All Organisms → Viruses → Predicted Viral1106Open in IMG/M
3300021964|Ga0222719_10327256Not Available982Open in IMG/M
3300021964|Ga0222719_10402775Not Available851Open in IMG/M
3300021964|Ga0222719_10520734Not Available709Open in IMG/M
3300022167|Ga0212020_1009529All Organisms → Viruses → Predicted Viral1421Open in IMG/M
3300022187|Ga0196899_1004753Not Available5869Open in IMG/M
3300022308|Ga0224504_10242694Not Available744Open in IMG/M
3300022921|Ga0255765_1084167All Organisms → Viruses → Predicted Viral1706Open in IMG/M
3300023273|Ga0255763_1345125All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon511Open in IMG/M
(restricted) 3300024059|Ga0255040_10053248All Organisms → Viruses → Predicted Viral1497Open in IMG/M
3300025608|Ga0209654_1000585Not Available34345Open in IMG/M
3300025608|Ga0209654_1001532Not Available18141Open in IMG/M
3300025608|Ga0209654_1004421Not Available7960Open in IMG/M
3300025608|Ga0209654_1008506All Organisms → Viruses → Predicted Viral4754Open in IMG/M
3300025608|Ga0209654_1015497All Organisms → Viruses → Predicted Viral3026Open in IMG/M
3300025608|Ga0209654_1021475All Organisms → Viruses → Predicted Viral2384Open in IMG/M
3300025608|Ga0209654_1023788All Organisms → Viruses → Predicted Viral2209Open in IMG/M
3300025608|Ga0209654_1068610All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300025608|Ga0209654_1078748Not Available933Open in IMG/M
3300025610|Ga0208149_1097196Not Available709Open in IMG/M
3300025617|Ga0209138_1100758Not Available847Open in IMG/M
3300025617|Ga0209138_1109620All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon789Open in IMG/M
3300025617|Ga0209138_1113782Not Available764Open in IMG/M
3300025617|Ga0209138_1159575Not Available566Open in IMG/M
3300025617|Ga0209138_1166752Not Available544Open in IMG/M
3300025653|Ga0208428_1085497Not Available904Open in IMG/M
3300025671|Ga0208898_1005348Not Available7214Open in IMG/M
3300025671|Ga0208898_1115256Not Available787Open in IMG/M
3300025751|Ga0208150_1183135Not Available652Open in IMG/M
3300025759|Ga0208899_1108726All Organisms → Viruses → Predicted Viral1019Open in IMG/M
3300025828|Ga0208547_1055627All Organisms → Viruses → Predicted Viral1349Open in IMG/M
3300025853|Ga0208645_1060823All Organisms → Viruses → Predicted Viral1743Open in IMG/M
3300027967|Ga0209272_10325448Not Available523Open in IMG/M
3300032274|Ga0316203_1157403Not Available631Open in IMG/M
3300032277|Ga0316202_10008653Not Available5374Open in IMG/M
3300032277|Ga0316202_10052355All Organisms → Viruses → Predicted Viral1914Open in IMG/M
3300034374|Ga0348335_150608Not Available637Open in IMG/M
3300034418|Ga0348337_028345Not Available2630Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.74%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine25.74%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh24.75%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water8.91%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat2.97%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface2.97%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.99%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.99%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.99%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.99%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.99%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300003409Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNAEnvironmentalOpen in IMG/M
3300003410Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNAEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007609Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MGEnvironmentalOpen in IMG/M
3300011258Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeateEnvironmentalOpen in IMG/M
3300016724Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011507AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016726Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011504BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016727Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016734Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016791Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041412BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016797Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020013Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041406CT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020053Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020174Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022167Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300022921Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaGEnvironmentalOpen in IMG/M
3300023273Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300027967Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_10001714173300000116MarineMVVTKQEFQEIIKQLNDILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE*
BBAY92_1000075033300000947Macroalgal SurfaceMVVTKREFQEIIDQVNIILTKLDERIKKLEEAPKTARTTKTTKSQEKDLTSE*
BBAY92_1000397133300000947Macroalgal SurfaceMVVTKREFQEIIDQMNTILTKLDARLKKLEEEKPTRTTKTTKSQEKDLTNS*
BBAY92_1011102023300000947Macroalgal SurfaceMVVTKREFQEVIDQMNTILTKLDARINQLEKQKTTHTTKTTKSQEKDLTNE*
JGI26088J50261_101428243300003409MarineVVLTKREFQEVIDQMNQILTKLDERIKTLESAKPARITKTTKSQEKDLTNE*
JGI26088J50261_101467723300003409MarineMVVTKKEFQEVIEQVNTILTKLDTRLKELETNKPSRTTAKAKSQEKDLTNE*
JGI26088J50261_102461923300003409MarineMVVTKKEFQEIIEQMNGILTKLDQRLKALETAPAPRTTKTTKSQETS*
JGI26088J50261_102776633300003409MarineMVVTKKEFQEVIEQMNDILTKLDKRIKELEEKPTRSTKTVKSQENT*
JGI26088J50261_103034623300003409MarineMVVTKREFQEIIDQMNLILTKLDDRIKTLEEAKPSRTTKTTKSQEKDLTNE*
JGI26088J50261_104005323300003409MarineVVLTKREFQEVVDQMNQILTKLDERIKTLESAKPARTTKTTKSQEKDLTNE*
JGI26086J50260_101829143300003410MarineMVVTKREFQEIIDQMNLILTKLDERIKTLEEAKPARTTKTTKSQEKDLTNE*
JGI26086J50260_105962823300003410MarineMVVTKKEFQELVEQMNAILTKLDQRIKQLEEAKPARTTKTTKSQEKDLTNE*
JGI26086J50260_106766713300003410MarineMVVTKREFQEIIDQMNLILTKLDDRIKQLEEAKPARTTKTTKSQQKDLTNE*
JGI26086J50260_107844023300003410MarineMVVTKKEFQDMIEQINGILTKLDERLQTLEQKPVKTTKTTKSQEKDLTNS*
JGI26086J50260_110152823300003410MarineMVVTKREFQEIIDQMNGILTKLDSRIKELEAQKVTRTTKTTKSQEKDLTNS*
JGI26086J50260_110361413300003410MarineMVVTKREFQEIIDQMNGILTKLDSRIKELESQKTTRTTKTTKSQEKDLTNE*
Ga0074648_106042723300005512Saline Water And SedimentMVVTKKEFQEIIEQMNGILTKLDQRLKALETAPAPRTTKTTKSQET
Ga0075474_1004153133300006025AqueousMVVTKREFQEIIDQMNGILTKLDQRIKELEEAKPSRTTKTTKSQEKT*
Ga0075478_1011122823300006026AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEKPTRSAKTVKSQENT*
Ga0070754_1000144453300006810AqueousMVVTKKEFQEVIDQMNGILTKLDQRLKELESAKAPRTTKNTKSQETT*
Ga0070754_1001952253300006810AqueousMVVTQKEFQEIIKQLNDILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE*
Ga0070754_1003284043300006810AqueousMVVTKKEFQEVIDQMNDILTKLDQRLKELESAKAPRTTKTTKSQETT*
Ga0070754_1004220333300006810AqueousMVVTKKEFQEIIEQMNGILTKLDERLKKLETAPISRTTKTTKSQEKDLTNE*
Ga0070750_1010729243300006916AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKATKSQETT*
Ga0070750_1016795023300006916AqueousMVVTKKEFQEIIKQLNDILTKLDERLKKLETAPVSRTTKTIKSQEKDLTNE*
Ga0070746_1037784313300006919AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKSTKSQETT*
Ga0070746_1042502923300006919AqueousMVVTKKEFQEVIDQMNGILTKLDQRLKELESAKAPRTTKTTKSQETT*
Ga0070745_130953823300007344AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKATRTTKSTKSQETT*
Ga0070752_102629433300007345AqueousMVVTKKEFQEVIDQMNGILTKLDQRLKELESAKAPRTTK
Ga0070752_108121923300007345AqueousMVVTKQEFQEVIDQMNDILTKLDQRLKELESAKAPRTTKTTKSQETT*
Ga0099849_123386723300007539AqueousMVVTKKEFQEVIEQMNGILTKLDQRLKELESAKAPRTTKTTKSQETT*
Ga0102945_103662223300007609Pond WaterMVVTKREFQDVVEQMNAILTKLDKRISELEKAKTTTRAKSQAKDLTNE*
Ga0151677_106834923300011258MarineMVVTKLEFQEVINQINDILTKLDSRIKELEAVKKAPTTKTPKSQEKT*
Ga0182048_106931943300016724Salt MarshEFQEIIDQMNGILTKLDSRIKDLEDTKTPRNTKPAKSVPKDLTNE
Ga0182045_108621623300016726Salt MarshMVVTKREFQEIIDQMNGILTKLDERLKKLETAPVSRTTKTTKSQETT
Ga0182051_124635733300016727Salt MarshVTKREFQEIIDQMNGILTKLDSRIKDLEDTKTPRNTKPAKSVPKDLTNE
Ga0182092_108093213300016734Salt MarshNRMVVTKKEFQEVIDQMNGILTKLDQRLKELETVKAPRTTKTTKSQENT
Ga0182095_137815253300016791Salt MarshVMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKEPRTTKTTKSQETS
Ga0182095_164401313300016791Salt MarshVMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKSTKSQETT
Ga0182090_133723113300016797Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKELESHKTTRTTKTTKRQEKDLTNE
Ga0187217_116006613300017770SeawaterMVVTKKEFQDMIEQINGILTKLDERLQTLEQKPVKTTKTTKS
Ga0181552_10001364273300017824Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKDLEDTKTPRNTKPAKSVPKDLTNE
Ga0181552_1004362133300017824Salt MarshMVVTKKEFQEIIEQMNGILTKLDERLKKLETAPVSRTTKTTKSQETT
Ga0181552_1007522323300017824Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKELESQKTTRTTKTTKSQEKDLTNE
Ga0181607_1004459433300017950Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKELESQKTTRTTKTPKSQEKDLTNE
Ga0181607_1005268123300017950Salt MarshMVVTKKEFQEVIDQMNGILTKLDQRLKELETVKAPRTTKTTKSQENT
Ga0181607_1007275823300017950Salt MarshMVVTKKEFQEIIEQMNGILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE
Ga0181607_1008654823300017950Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKDLEDSKAPRNTKPAKSVPKDLTNE
Ga0181607_1040571933300017950Salt MarshMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKSTKSQETT
Ga0181607_1040656033300017950Salt MarshMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKEPRTTKTTKSQETS
Ga0181607_1065704323300017950Salt MarshMVVTKKEFQEIIEQINLILTKLDERIKELETIKPSRTTVKTKSQEKT
Ga0181577_1003996963300017951Salt MarshMVVTKREFQEVIDQMNAILTKLNERIKALEESKPTRTTKTPKSQENS
Ga0181558_1031970923300018417Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKELESQKTTLTTKTKKSQEKDLTNE
Ga0194024_105207813300019765FreshwaterIDQVNGILTKLDQRIKELEEAKSSRTTKTTKSQEKDLTNS
Ga0182086_115316513300020013Salt MarshMVVTKREFQEIIDQMNGILTKLDSRIKDLEDAKTPRNTKPAKSVPKDLTNE
Ga0181595_1009754943300020053Salt MarshEQMNDILTKLDKRIKELEEAKEPRTTKTTKSQETS
Ga0181603_1009271613300020174Salt MarshMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKEPRTTKTTKS
Ga0181603_1010637043300020174Salt MarshEIIDQINGILTKLDSRIKELESQKTTRTTKTTKSQEKDLTNE
Ga0222718_1000722483300021958Estuarine WaterVVLTKREFQEVVDQMNQILTKLDERIKTLESAKPARTTKTTKSQEKDLTNE
Ga0222718_1005885443300021958Estuarine WaterMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKATRTTKSTKSQETT
Ga0222718_1016049423300021958Estuarine WaterMVVTKREFQEAIDQMNAILIKLDQRIKELEKEKPTRTTKNTKSQEKDLTNE
Ga0222718_1057300013300021958Estuarine WaterRNRKQRRYCRTTNEAIMVVTKKEFQEVIEQMNTILTKLDSRIKELEEIKQGRTTKPAKSVPKTLTNE
Ga0222719_10007913103300021964Estuarine WaterMVVTKKEFQEVIEQVNTILTKLDTRLKELETNKPSRTTAKTKSQEKDLTNE
Ga0222719_1027477523300021964Estuarine WaterMVVTKKEFQEIIEQMNGILTKLDQRIKQLEEAKPTRTTKTTKSQETS
Ga0222719_1032725623300021964Estuarine WaterMVVTKKEFQEVIEQMNTILTKLDSRIKELEEIKQGRTTKPAKSVPKTLTNE
Ga0222719_1040277523300021964Estuarine WaterMVVTKKEFQEVIDQMNGILTKLDQRIKELESAKAPRTTKTTKSQETT
Ga0222719_1052073433300021964Estuarine WaterMVVTKKEFQEVIEQVNEILTKLDKRIKELESAKAPRSTKTTKSQAQDLTNE
Ga0212020_100952923300022167AqueousMVVTKKEFQEVIDQMNGILTKLDQRLKELESAKAPRTTKNTKSQETT
Ga0196899_100475363300022187AqueousMVVTKREFQEIIDQMNGILTKLDQRIKELEEAKPSRTTKTTKSQEKT
Ga0224504_1024269423300022308SedimentMVVTKREFQEIIDQMNGILTKLDSRIKELEAQKSTRTTKTTKSQEKDLTNS
Ga0255765_108416723300022921Salt MarshMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKEPRTTKSTKSQETT
Ga0255763_134512523300023273Salt MarshMVVTKREFQEIIDQINGILTKLDSRIKELESQKTTRTTKTTKSQEKDLTNE
(restricted) Ga0255040_1005324823300024059SeawaterMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKTTKSQETS
Ga0209654_100058553300025608MarineMVVTKKEFQEVIEQVNTILTKLDTRLKELETNKPSRTTAKAKSQEKDLTNE
Ga0209654_1001532153300025608MarineVVLTKREFQEVIDQMNQILTKLDERIKTLESAKPARITKTTKSQEKDLTNE
Ga0209654_100442123300025608MarineMVVTKREFQEIIDQMNLILTKLDDRIKQLEEAKPARTTKTTKSQQKDLTNE
Ga0209654_100850633300025608MarineMVVTKKEFQEVIEQMNDILTKLDKRIKELEEKPTRSTKTVKSQENT
Ga0209654_101549743300025608MarineMVVTKKEFQEIIEQMNGILTKLDQRLKALETAPAPRTTKTTKSQETS
Ga0209654_102147523300025608MarineMVVTKKEFQEVIEQMNDILTKLDKRLKELEDAKAPRTTKSTKSQETT
Ga0209654_102378823300025608MarineMVVTKREFQEIIDQMNGILTKLDSRIKELEAQKVTRTTKTTKSQEKDLTNS
Ga0209654_106861023300025608MarineMVVTKKEFQEIIEQMNAILTKLDKRITELETVKASRTTKTTKSQENT
Ga0209654_107874813300025608MarineMVVTKREFQEIIDQMNLILTKLDDRIKTLEEAKPSRTTKTTKSQEKDLTNE
Ga0208149_109719623300025610AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEKPTRSAKTVKSQENT
Ga0209138_110075823300025617MarineMVVTKKEFQELVEQMNAILTKLDQRIKQLEEAKPARTTKTTKSQEKDLTNE
Ga0209138_110962033300025617MarineMVVTKKEFQDMIEQINGILTKLDERLQTLEQKPVKTTKTTKSQEKDLTNS
Ga0209138_111378223300025617MarineMVVTKKEFQEVIDQMNGILTKLDQRIKELESVKAPRTTKTTKSQETT
Ga0209138_115957523300025617MarineMVVTKKEFQEIIEQMNSILTKLDERLKELENQKPSRTTKTTKSQETT
Ga0209138_116675213300025617MarineEAIMVVTKKEFQEVIEQMNTILTKLDSRIKELEEIKQGRTTKPAKSVPKTLTNE
Ga0208428_108549723300025653AqueousMVVTKKEFQEIIEQMNGILTKLDERLKKLETAPISRTTKTTKSQEKDLTNE
Ga0208898_100534823300025671AqueousMVVTQKEFQEIIKQLNDILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE
Ga0208898_111525613300025671AqueousEFQEVIDQMNDILTKLDQRLKELESAKAPRTTKTTKSQETT
Ga0208150_118313533300025751AqueousIIKQLNDILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE
Ga0208899_110872643300025759AqueousMVVTKKEFQEVIEQMNDILTKLDKRIKELEEAKAPRTTKATKSQETT
Ga0208547_105562713300025828AqueousMVVTKREFQEIIDQMNGILTKLDQRIKELEEAKPSRTTKTTKSQEK
Ga0208645_106082323300025853AqueousMVVTKKEFQEVIDQMNDILTKLDQRLKELESAKAPRTTKTTKSQETT
Ga0209272_1032544813300027967Marine SedimentMVVTKQEFQEIIKQLNDILTKLDERLKKLETAPVSRTTKTTKSQEKDLTNE
Ga0316203_115740333300032274Microbial MatVTKREFQEIIDQMNGILTKLDSRIKELESQKTTRTTKTTKSQEKDLTNE
Ga0316202_1000865353300032277Microbial MatMVVTKREFQEIIDQMNGILIKLDSRIKELESQKTTRTTKTTKSQEKDLTNE
Ga0316202_1005235523300032277Microbial MatMVVTKREFQEIIDQMNDILTKLDSRLKELEGQKSTRITKTTKSQEKT
Ga0348335_150608_91_2343300034374AqueousMVVTKKEFQEVIDQMNGILTKLDQRLKELESAKAPRTTKTTKSQETT
Ga0348337_028345_1862_20173300034418AqueousMVVTKKEFQEIIEQMNGILTKLEEHIKKLETAPISRTTKTTKSQEKDLTNE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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