NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102762

Metagenome Family F102762

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102762
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence VLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Number of Associated Samples 67
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 7.92 %
% of genes near scaffold ends (potentially truncated) 22.77 %
% of genes from short scaffolds (< 2000 bps) 95.05 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.178 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(30.693 % of family members)
Environment Ontology (ENVO) Unclassified
(37.624 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.465 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 38.24%    β-sheet: 5.88%    Coil/Unstructured: 55.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF05988DUF899 51.49
PF00005ABC_tran 6.93
PF00196GerE 1.98
PF08327AHSA1 1.98
PF12681Glyoxalase_2 1.98
PF07366SnoaL 1.98
PF13088BNR_2 0.99
PF04248NTP_transf_9 0.99
PF00903Glyoxalase 0.99
PF00908dTDP_sugar_isom 0.99
PF05088Bac_GDH 0.99
PF13515FUSC_2 0.99
PF00589Phage_integrase 0.99
PF01883FeS_assembly_P 0.99
PF00875DNA_photolyase 0.99
PF02694UPF0060 0.99
PF00990GGDEF 0.99
PF13649Methyltransf_25 0.99
PF01872RibD_C 0.99
PF02518HATPase_c 0.99
PF07883Cupin_2 0.99
PF12697Abhydrolase_6 0.99
PF10009DUF2252 0.99
PF01047MarR 0.99
PF00132Hexapep 0.99
PF01545Cation_efflux 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 51.49
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.99
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.99
COG0415Deoxyribodipyrimidine photolyaseReplication, recombination and repair [L] 0.99
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.99
COG1742Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamilyGeneral function prediction only [R] 0.99
COG1898dTDP-4-dehydrorhamnose 3,5-epimerase or related enzymeCell wall/membrane/envelope biogenesis [M] 0.99
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.99
COG2343Uncharacterized conserved protein, DUF427 familyFunction unknown [S] 0.99
COG2902NAD-specific glutamate dehydrogenaseAmino acid transport and metabolism [E] 0.99
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms82.18 %
UnclassifiedrootN/A17.82 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002568|C688J35102_119616557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria732Open in IMG/M
3300002568|C688J35102_120382605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1028Open in IMG/M
3300005329|Ga0070683_100727545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales951Open in IMG/M
3300005331|Ga0070670_100520807All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1059Open in IMG/M
3300005337|Ga0070682_100164917All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1534Open in IMG/M
3300005345|Ga0070692_11129445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales555Open in IMG/M
3300005356|Ga0070674_101804619All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales554Open in IMG/M
3300005441|Ga0070700_101292905Not Available613Open in IMG/M
3300005454|Ga0066687_10935322Not Available517Open in IMG/M
3300005535|Ga0070684_100365826All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1327Open in IMG/M
3300005563|Ga0068855_100905342Not Available932Open in IMG/M
3300005615|Ga0070702_101340829Not Available583Open in IMG/M
3300005981|Ga0081538_10009454All Organisms → cellular organisms → Bacteria8138Open in IMG/M
3300006844|Ga0075428_101577537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales687Open in IMG/M
3300006894|Ga0079215_10126666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1176Open in IMG/M
3300006918|Ga0079216_11883633All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300007790|Ga0105679_10815375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1339Open in IMG/M
3300007790|Ga0105679_10820756All Organisms → cellular organisms → Bacteria1007Open in IMG/M
3300009094|Ga0111539_10678223All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1200Open in IMG/M
3300009094|Ga0111539_12747498Not Available570Open in IMG/M
3300009100|Ga0075418_12929554All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300009147|Ga0114129_10509753All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1570Open in IMG/M
3300009545|Ga0105237_12099173Not Available574Open in IMG/M
3300009553|Ga0105249_13045959Not Available538Open in IMG/M
3300009789|Ga0126307_10220464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1523Open in IMG/M
3300009789|Ga0126307_10361670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1169Open in IMG/M
3300009789|Ga0126307_10510241All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300009789|Ga0126307_10549457All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria932Open in IMG/M
3300009789|Ga0126307_11126799All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300009789|Ga0126307_11160768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria625Open in IMG/M
3300009789|Ga0126307_11355730All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300009840|Ga0126313_10003242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales9327Open in IMG/M
3300009840|Ga0126313_10014402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD00825112Open in IMG/M
3300009840|Ga0126313_10611756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria878Open in IMG/M
3300009840|Ga0126313_10953240All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300010039|Ga0126309_10332261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales889Open in IMG/M
3300010040|Ga0126308_11030653All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300010045|Ga0126311_11808523Not Available518Open in IMG/M
3300010045|Ga0126311_11922358Not Available503Open in IMG/M
3300010166|Ga0126306_10626764All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300010371|Ga0134125_10674540All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300010375|Ga0105239_12866997All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter563Open in IMG/M
3300010399|Ga0134127_11168592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria835Open in IMG/M
3300010399|Ga0134127_11594181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria727Open in IMG/M
3300012916|Ga0157310_10411280All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300012939|Ga0162650_100104749All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300012988|Ga0164306_11836157All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300013306|Ga0163162_11199039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria861Open in IMG/M
3300014488|Ga0182001_10079315All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300014829|Ga0120104_1094638Not Available595Open in IMG/M
3300015373|Ga0132257_102635003All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300018051|Ga0184620_10091115All Organisms → cellular organisms → Bacteria927Open in IMG/M
3300018422|Ga0190265_10228558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1894Open in IMG/M
3300018422|Ga0190265_10463294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1375Open in IMG/M
3300018422|Ga0190265_10468665Not Available1368Open in IMG/M
3300018422|Ga0190265_10662552Not Available1164Open in IMG/M
3300018422|Ga0190265_10816266Not Available1055Open in IMG/M
3300018422|Ga0190265_12266703Not Available645Open in IMG/M
3300018422|Ga0190265_12512182All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300018422|Ga0190265_12944116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria569Open in IMG/M
3300018429|Ga0190272_10692616All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria915Open in IMG/M
3300018432|Ga0190275_10306887All Organisms → cellular organisms → Bacteria1559Open in IMG/M
3300018432|Ga0190275_10626112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1126Open in IMG/M
3300018432|Ga0190275_10703285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli1068Open in IMG/M
3300018432|Ga0190275_11269307All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300018432|Ga0190275_11754714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708699Open in IMG/M
3300018432|Ga0190275_13025985All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria544Open in IMG/M
3300018466|Ga0190268_11196318Not Available630Open in IMG/M
3300018466|Ga0190268_11489780All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300018469|Ga0190270_10146797All Organisms → cellular organisms → Bacteria1908Open in IMG/M
3300018469|Ga0190270_12513044All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300018476|Ga0190274_12233652All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300018476|Ga0190274_13994688All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300018481|Ga0190271_11296691All Organisms → cellular organisms → Bacteria849Open in IMG/M
3300018481|Ga0190271_12195883All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300019377|Ga0190264_10303197All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300019377|Ga0190264_12119887All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300020181|Ga0196958_10014256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2226Open in IMG/M
3300025908|Ga0207643_10650456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria680Open in IMG/M
3300025908|Ga0207643_10988869Not Available544Open in IMG/M
3300025925|Ga0207650_10412071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1120Open in IMG/M
3300025926|Ga0207659_10563774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria969Open in IMG/M
3300025932|Ga0207690_11224112All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300025942|Ga0207689_10890645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria751Open in IMG/M
3300025945|Ga0207679_11960262Not Available534Open in IMG/M
3300025961|Ga0207712_10637480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria925Open in IMG/M
3300026089|Ga0207648_10345778All Organisms → cellular organisms → Bacteria1340Open in IMG/M
3300028589|Ga0247818_10950645All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300028721|Ga0307315_10198190All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300028796|Ga0307287_10328304All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300028807|Ga0307305_10372596All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300030513|Ga0268242_1067932All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300031164|Ga0307502_10065901All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300031731|Ga0307405_11498957All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300031852|Ga0307410_10405891All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300031938|Ga0308175_100748347All Organisms → cellular organisms → Bacteria1065Open in IMG/M
3300031938|Ga0308175_102351103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter597Open in IMG/M
3300031995|Ga0307409_101429200All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300032074|Ga0308173_11244804Not Available696Open in IMG/M
3300034143|Ga0334961_003344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces2631Open in IMG/M
3300034143|Ga0334961_030907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria916Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil30.69%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil15.84%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.96%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.97%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.97%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil2.97%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.98%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.98%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.99%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.99%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.99%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.99%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007790Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projectsEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012916Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2EnvironmentalOpen in IMG/M
3300012939Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015EnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014488Bulk soil microbial communities from Mexico - San Felipe (SF) metaGEnvironmentalOpen in IMG/M
3300014829Permafrost microbial communities from Nunavut, Canada - A10_35cm_6MEnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300020181Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10EnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300030513Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)EnvironmentalOpen in IMG/M
3300031164Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_SEnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300034143Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 57SNSEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J35102_11961655723300002568SoilVLAHIAGIPVEEALVAAPGLLAGLSMIAAYVRATATRPRASADE*
C688J35102_12038260523300002568SoilVLAHVAGIPVEEALQAAPALLAGVTVFAGYLRATAARLRR*
Ga0070683_10072754523300005329Corn RhizosphereVFAHVGGLPVEEALQAAPAALAALTVLAGYVRATLARPRR*
Ga0070670_10052080723300005331Switchgrass RhizosphereVLAHVGGVPVEEALQAAPAALAALTVLGGYVRATLARPRR*
Ga0070682_10016491713300005337Corn RhizosphereVFAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR*
Ga0070692_1112944513300005345Corn, Switchgrass And Miscanthus RhizosphereVFAHVGGLPVEEALQAAPAALAALTVLAGYLRATLARPRR*
Ga0070674_10180461923300005356Miscanthus RhizosphereVFAHVAGIPVEEALQAAPALLAGLAVVAGYIRATAARPRR*
Ga0070700_10129290523300005441Corn, Switchgrass And Miscanthus RhizosphereVLAHVAGIPVEEALPAAPALPAGAAVIAGTSGRPPRGRRR*
Ga0066687_1093532223300005454SoilHSDVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR*
Ga0070684_10036582633300005535Corn RhizosphereDVFAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR*
Ga0068855_10090534233300005563Corn RhizosphereVLAHVAGIPVEEALPAAPALPAGAAVIAGYVRATAAPGR*
Ga0070702_10134082913300005615Corn, Switchgrass And Miscanthus RhizosphereVFAHVGGVPVEEALQAAPVLLTGLTVFAGYVRATAAGRRRDQ*
Ga0081538_1000945423300005981Tabebuia Heterophylla RhizosphereVLAHVAGIPVEEALLVAPALLAGVTVIAGYVRATAARPRR*
Ga0075428_10157753723300006844Populus RhizosphereVLAHVAGIPVEEALQAAPALLAGLTVFAGYLRATAARTRR*
Ga0079215_1012666613300006894Agricultural SoilVLAHVAGFPVEEALQAAPALLAGLTVLAGYVRATATRPRR*
Ga0079216_1188363323300006918Agricultural SoilVLAHVAGIPVEEALLAAPALLAGVTVLAGYVRAAATRPRR*
Ga0105679_1081537533300007790SoilVLAHVGALPVEEALLAAPALLAWVSTIAGYARAHLVRNG*
Ga0105679_1082075623300007790SoilMFAHIGGVPVEEALTAAPALLASATVLAGYLRATAGRARR*
Ga0111539_1067822323300009094Populus RhizosphereVFAHVGGIPVEEALQAAPAALAALTVLAGYVRATLARPRR*
Ga0111539_1274749823300009094Populus RhizospherePSSDVFAHVGCLPVEEALQAAPAALAAMTVLAGYLRATLARPRR*
Ga0075418_1292955423300009100Populus RhizosphereVLAHVAGIPVEEALQAAPALLAAVTVIAGYVRAIAARHALAEAEGS
Ga0114129_1050975323300009147Populus RhizosphereVLAHVAGIPVEEALQAAPGLLAGLTVIAGYIRATAARRRR*
Ga0105237_1209917323300009545Corn RhizosphereAGTTPTTPSSDVFAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR*
Ga0105249_1304595923300009553Switchgrass RhizosphereVLAHVAGIPVEEALLAAPALLAGAAVIAGYVRATAARRRR*
Ga0126307_1022046423300009789Serpentine SoilVLAHIGGIPLEEALQAAPALLTGLTVIAGYLRTTAARPRR*
Ga0126307_1036167023300009789Serpentine SoilVLAHVAGIPVEEALLAAPVLLAGVTAIAGYVRATAARSRR*
Ga0126307_1051024123300009789Serpentine SoilVFAHVAGIPVEEALVAGPALLAGVTLIAGYLRATVARPRR*
Ga0126307_1054945723300009789Serpentine SoilVLAHVAGIPLEEALQAAPALLAGVTVIAGYVRATAARPRR*
Ga0126307_1112679923300009789Serpentine SoilVLAHVAGVPVEEALQAAPALLAAVTMIAGYVRATVARPRR*
Ga0126307_1116076823300009789Serpentine SoilMTVLAHVAGIPVEEALLAAPALLAGVTVIAGYLRATAARPRR*
Ga0126307_1135573013300009789Serpentine SoilVLAHIAGIPVEEALMAAPALLTGLTVIAGYLRASAARPRR*
Ga0126313_1000324253300009840Serpentine SoilVLAHVAGISVEEALPAGVSVIAGDVRATAARRAS*
Ga0126313_1001440223300009840Serpentine SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR*
Ga0126313_1061175623300009840Serpentine SoilVLAHVAGVPVEEALLAAPGLMAGVTVVAGYVRATGARLRR*
Ga0126313_1095324023300009840Serpentine SoilVLAHVAGLPVEEALLAEPALVAGVTVAAGYVRATAARPRR*
Ga0126309_1033226123300010039Serpentine SoilVLAHVAGFPVEEALTAAPALLAALTMIAGYVRATAARSRR*
Ga0126308_1103065313300010040Serpentine SoilVLAHVAGIPVEEALLAAPVLLAGVTAIAGYVRATAARPRR*
Ga0126311_1180852323300010045Serpentine SoilVLAHVAGIPIEEALLAAPALLAGLTVIAGYVRAIAARPRR*
Ga0126311_1192235823300010045Serpentine SoilVLAHVAGIPAEEALLAEPALVAGVTVAAGYVRATAARPRR*
Ga0126306_1062676423300010166Serpentine SoilVLAHVGGIPVEEALAAAPALLAGVTVIAGYVRATAARARR*
Ga0134125_1067454013300010371Terrestrial SoilVLAHVAGIPVEEALMAAPALLAGVTMIAGYVRATAARPRR*
Ga0105239_1286699723300010375Corn RhizosphereVLAHVAGIPVEEALLAAPALLAGAALIAGYVRATAARRRR*
Ga0134127_1116859223300010399Terrestrial SoilAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR*
Ga0134127_1159418123300010399Terrestrial SoilVLAHVAGIPVEEASMAAPALLAGVTMIAGYVRATAARPRR*
Ga0157310_1041128023300012916SoilVLAHVAGIPVEEALQAAPALLAGATVIAGYIRATAARRR*
Ga0162650_10010474913300012939SoilVLAHVAGIPVEEALLAAPALLAGVTVLAGYVRATAARPRR*
Ga0164306_1183615713300012988SoilVLAHVAGIAVEEVLLAAPALLAGMTVIVGYVRRAW
Ga0163162_1119903923300013306Switchgrass RhizospherePVEEALQAAPVLLTGLTVFAGYVRATAAGRRRDQ*
Ga0182001_1007931523300014488SoilVLAHVAGIPVEEALLAAPALVAAVTVIAGYLRATVARPRR*
Ga0120104_109463813300014829PermafrostTSTTTHSDVLAHVAGIPIEEALLAAPALLAGVTVIAGYVRATAARPRR*
Ga0132257_10263500313300015373Arabidopsis RhizosphereVFAHVGGLPVEEALQAAPAALAALTVLAGHVRATLARPRR*
Ga0184620_1009111523300018051Groundwater SedimentVLAHVAGFPVEEALQAAPALLAGVTVMVGYVRATAARPRR
Ga0190265_1022855813300018422SoilSDVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0190265_1046329413300018422SoilSDVLAHVAGIPVEEALLAAPALLASVTVIVSYVRATAARPRR
Ga0190265_1046866533300018422SoilVLAHVAGIPVEEALLAAPALLASLTMIAGYVRTAAARPRR
Ga0190265_1066255233300018422SoilVLAHVAGIPVEEALMAAPALLAGVTVIAGYVRATVARPRR
Ga0190265_1081626633300018422SoilAHVAGIPVEEALLAAPALLASVTVIAGYVRAAASRPRR
Ga0190265_1226670323300018422SoilVLAHVAGIPVEEALLAAPALLAGVTAIAGYVRATAARPRR
Ga0190265_1251218223300018422SoilVLAHVAGVPVEEALLAAPALLTGLTVIAGYVRATAARARSRGPRTY
Ga0190265_1294411623300018422SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRALRT
Ga0190272_1069261623300018429SoilTTRSDVFAHVGGIPVEEALRAAPALLAGLTVIAGYLRATAARPRR
Ga0190275_1030688713300018432SoilTTTHSDVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATATRPRR
Ga0190275_1062611213300018432SoilTTTHSDVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0190275_1070328513300018432SoilTAHSDVLAHVAGIPVEEALAAAPALLAGLTVIAGYVRATAARPRH
Ga0190275_1126930723300018432SoilVLAHVRGIPVEEALLAAPALLAGVTVIAGYIRATAARPRR
Ga0190275_1175471423300018432SoilMLAHISGIPVEEALQAAPALLASVTVIAGYIRATAARPRR
Ga0190275_1302598523300018432SoilMFAHVAGFPVEEALLAAPALLAGVTVIVGYVRATAARPRRSRRPR
Ga0190268_1119631813300018466SoilVLAHIAGIPVEEALQAAPALLASVTVIAGYVRATAARPRR
Ga0190268_1148978023300018466SoilVLAHIAGFPVEEALQAAPALLAGVTVIAGYLRATAARPRR
Ga0190270_1014679723300018469SoilVLLAHVAGFPVEEALLAAPALLAGVTVIAGYIRATVARPRR
Ga0190270_1251304413300018469SoilMTSTTTHSDVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0190274_1223365223300018476SoilVVLAHVAGFPVEEALLAAPALLAGVTVIGGYIRATVARPRR
Ga0190274_1399468823300018476SoilVFAHVAGIPLEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0190271_1129669123300018481SoilVLAHVAGIPVEEALLAAPALLAGVAVVAGYVRATAARLRR
Ga0190271_1219588323300018481SoilVLAHVVGIPVEEALLAAPALLAGVTVIAGYVRATAASLRR
Ga0190264_1030319723300019377SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0190264_1211988713300019377SoilVLAHVAGIPVEEALLAVPALLAGATAIAGYVRATAARPRR
Ga0196958_1001425643300020181SoilVLAHVSGIPVEEALLAAPALLAGVTAIAGYVRATAARPRTRRPTD
Ga0207643_1065045623300025908Miscanthus RhizosphereTTSTTGRSDVLAHVGGVPVEEALQAAPAALAALTVLGGYVRATLARPRR
Ga0207643_1098886913300025908Miscanthus RhizosphereTTTHSDVLAHVAGIPVEEALPAGVTVIAGCVRHDTRRPR
Ga0207650_1041207133300025925Switchgrass RhizosphereVLAHVGGVPVEEALQAAPAALAALTVLGGYVRATLARPRR
Ga0207659_1056377423300025926Miscanthus RhizospherePTTPRSDVLAHVGGLPVEEALQAAPAALAALTVLAGYVRATLARPRR
Ga0207690_1122411213300025932Corn RhizosphereVFAHVGGLPVEEALQAAPAALAALTVLAGYVRATLARPRR
Ga0207689_1089064523300025942Miscanthus RhizosphereVLAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR
Ga0207679_1196026213300025945Corn RhizosphereVLAHVAGIPVEEALLAAPALLAGAAVIAGYVRATAARLRR
Ga0207712_1063748013300025961Switchgrass RhizosphereGTTPTTPRSDVFAHVGGLPVEEALQAAPAALAAMTVLAGYLRATLARPRR
Ga0207648_1034577823300026089Miscanthus RhizosphereVFAHVGGLPVEEALQAAPAALAALTVLAGYLRATLARPRR
Ga0247818_1095064523300028589SoilVLAHIAGIPVEEALQAAPALLAGATVIAGYVRATAARSRRGIRRGV
Ga0307315_1019819023300028721SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARHRR
Ga0307287_1032830423300028796SoilVLAHVAGIPVEEALLAAPALLAGVTVIVGYIRATAARPRR
Ga0307305_1037259613300028807SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRPCPQCTSP
Ga0268242_106793223300030513SoilVLAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRQLRSRIAHASA
Ga0307502_1006590123300031164SoilVLAHVAGIPVEEALLAAPALLAGVTVIVGYVRATVARPRR
Ga0307405_1149895713300031731RhizosphereVFAHVAGIPVEEALLAAPALLAGVTVIAGYVRATAARPRR
Ga0307410_1040589123300031852RhizosphereVLAHAAGIPVEEALLAAPALLAGVTVIAGYVRAAAARPRR
Ga0308175_10074834723300031938SoilVLAHVAGIPVEESLLAAPALLAGVTVIAAYVRATAARRRR
Ga0308175_10235110313300031938SoilVLAHVAGIPVEEALMAAPGALAGLTVLAGYVRATLARPRR
Ga0307409_10142920023300031995RhizosphereVLAHVAGIPVEEALVAAPALLAGVTVIAGYVRATAARPGR
Ga0308173_1124480413300032074SoilTRSDVFAHVAGIPVEEALTAAPALLAGVTMIAAYVRATAARRRR
Ga0334961_003344_152_2773300034143Sub-Biocrust SoilMLLAHVGIIPLEEALLAAPALLAGATVIAGYLRTIAVRPRR
Ga0334961_030907_214_3393300034143Sub-Biocrust SoilMLLAHVGGIPVEEALMAAPALLAGATVIADYVRAIVARPRR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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