Metagenome / Metatranscriptome Family F102750

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102750
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	106 residues
Representative Sequence	MDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMIEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTGRGEADARYAAVQKARRIVEAAAKRHLRL
Number of Associated Samples	50
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.91 %
% of genes near scaffold ends (potentially truncated)	49.50 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.426 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (54.455 % of family members)
Environment Ontology (ENVO)	Unclassified (72.277 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.257 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.36% β-sheet: 0.00% Coil/Unstructured: 38.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03807	F420_oxidored	7.92
PF00106	adh_short	2.97
PF00082	Peptidase_S8	2.97
PF04392	ABC_sub_bind	1.98
PF00583	Acetyltransf_1	1.98
PF08327	AHSA1	1.98
PF00211	Guanylate_cyc	1.98
PF00355	Rieske	1.98
PF00857	Isochorismatase	1.98
PF13191	AAA_16	0.99
PF00579	tRNA-synt_1b	0.99
PF01177	Asp_Glu_race	0.99
PF13426	PAS_9	0.99
PF08281	Sigma70_r4_2	0.99
PF05977	MFS_3	0.99
PF00578	AhpC-TSA	0.99
PF04191	PEMT	0.99
PF00378	ECH_1	0.99
PF08448	PAS_4	0.99
PF03243	MerB	0.99
PF01381	HTH_3	0.99
PF00296	Bac_luciferase	0.99
PF07883	Cupin_2	0.99
PF03358	FMN_red	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.98
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.98
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.98
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.99
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.99
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.99
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.98 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.99 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.98 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.99 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	22.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	19.80 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.99 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.81 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Hydrogenophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga	0.99 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.99 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.81 %
Hydrogenophaga taeniospiralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → Hydrogenophaga taeniospiralis	0.99 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	0.99 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.99 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.99 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	0.99 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0753148	Not Available	552	Open in IMG/M
3300004267\|Ga0066396_10064286	Not Available	617	Open in IMG/M
3300004268\|Ga0066398_10011871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1301	Open in IMG/M
3300004281\|Ga0066397_10016218	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300004798\|Ga0058859_10979477	Not Available	521	Open in IMG/M
3300005332\|Ga0066388_100139581	All Organisms → cellular organisms → Bacteria → Proteobacteria	2985	Open in IMG/M
3300005332\|Ga0066388_100505523	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1844	Open in IMG/M
3300005332\|Ga0066388_100986643	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1408	Open in IMG/M
3300005332\|Ga0066388_103926633	Not Available	758	Open in IMG/M
3300005332\|Ga0066388_105545843	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	639	Open in IMG/M
3300005332\|Ga0066388_105580749	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005445\|Ga0070708_100358857	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300005467\|Ga0070706_100541321	Not Available	1083	Open in IMG/M
3300005518\|Ga0070699_100061869	All Organisms → cellular organisms → Bacteria → Proteobacteria	3244	Open in IMG/M
3300005518\|Ga0070699_100532486	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300005536\|Ga0070697_101306030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300005713\|Ga0066905_100008058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4770	Open in IMG/M
3300005713\|Ga0066905_101625613	Not Available	592	Open in IMG/M
3300005713\|Ga0066905_101835845	Not Available	560	Open in IMG/M
3300005764\|Ga0066903_100068292	All Organisms → cellular organisms → Bacteria	4519	Open in IMG/M
3300005764\|Ga0066903_100508313	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300006049\|Ga0075417_10093694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1355	Open in IMG/M
3300006847\|Ga0075431_101763155	Not Available	575	Open in IMG/M
3300006903\|Ga0075426_10169966	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300006914\|Ga0075436_100439234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	949	Open in IMG/M
3300009100\|Ga0075418_10569379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1218	Open in IMG/M
3300009147\|Ga0114129_10280889	All Organisms → cellular organisms → Bacteria	2225	Open in IMG/M
3300009792\|Ga0126374_11190518	Not Available	609	Open in IMG/M
3300009792\|Ga0126374_11536829	Not Available	547	Open in IMG/M
3300010043\|Ga0126380_10053064	Not Available	2202	Open in IMG/M
3300010043\|Ga0126380_10094206	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1777	Open in IMG/M
3300010043\|Ga0126380_10161131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1452	Open in IMG/M
3300010043\|Ga0126380_10188812	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300010043\|Ga0126380_10780276	Not Available	779	Open in IMG/M
3300010046\|Ga0126384_10661105	Not Available	922	Open in IMG/M
3300010046\|Ga0126384_10824815	Not Available	832	Open in IMG/M
3300010047\|Ga0126382_10192992	Not Available	1441	Open in IMG/M
3300010047\|Ga0126382_10193586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1439	Open in IMG/M
3300010047\|Ga0126382_10492997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14	983	Open in IMG/M
3300010047\|Ga0126382_10722499	Not Available	838	Open in IMG/M
3300010047\|Ga0126382_11255666	Not Available	667	Open in IMG/M
3300010047\|Ga0126382_11569937	Not Available	609	Open in IMG/M
3300010358\|Ga0126370_10004332	All Organisms → cellular organisms → Bacteria	7017	Open in IMG/M
3300010358\|Ga0126370_10015550	All Organisms → cellular organisms → Bacteria	4234	Open in IMG/M
3300010358\|Ga0126370_10142529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → Hydrogenophaga taeniospiralis	1734	Open in IMG/M
3300010358\|Ga0126370_11369915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	666	Open in IMG/M
3300010359\|Ga0126376_10006615	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6998	Open in IMG/M
3300010359\|Ga0126376_10056391	Not Available	2805	Open in IMG/M
3300010359\|Ga0126376_10155325	Not Available	1839	Open in IMG/M
3300010359\|Ga0126376_10293380	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300010359\|Ga0126376_10452822	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1173	Open in IMG/M
3300010359\|Ga0126376_10945496	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	857	Open in IMG/M
3300010359\|Ga0126376_11196940	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300010359\|Ga0126376_12372560	Not Available	577	Open in IMG/M
3300010359\|Ga0126376_12889809	Not Available	530	Open in IMG/M
3300010360\|Ga0126372_10028483	All Organisms → cellular organisms → Bacteria	3452	Open in IMG/M
3300010360\|Ga0126372_10724265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	975	Open in IMG/M
3300010361\|Ga0126378_12192690	Not Available	630	Open in IMG/M
3300010362\|Ga0126377_10040252	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4017	Open in IMG/M
3300010362\|Ga0126377_10620791	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300010362\|Ga0126377_11105997	Not Available	861	Open in IMG/M
3300010362\|Ga0126377_11485373	Not Available	751	Open in IMG/M
3300010362\|Ga0126377_11557758	Not Available	735	Open in IMG/M
3300010362\|Ga0126377_12400226	Not Available	603	Open in IMG/M
3300010366\|Ga0126379_10082820	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2786	Open in IMG/M
3300010366\|Ga0126379_11499753	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300010366\|Ga0126379_13172930	Not Available	550	Open in IMG/M
3300010366\|Ga0126379_13725717	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511	Open in IMG/M
3300010376\|Ga0126381_104039466	Not Available	571	Open in IMG/M
3300010398\|Ga0126383_10031137	All Organisms → cellular organisms → Bacteria	4235	Open in IMG/M
3300010398\|Ga0126383_10075952	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300010398\|Ga0126383_10637946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1140	Open in IMG/M
3300010398\|Ga0126383_10693292	Not Available	1096	Open in IMG/M
3300010398\|Ga0126383_11268459	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300010398\|Ga0126383_12554886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300011269\|Ga0137392_10335491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1252	Open in IMG/M
3300011270\|Ga0137391_11562907	Not Available	504	Open in IMG/M
3300012363\|Ga0137390_10691772	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300012685\|Ga0137397_10839543	Not Available	681	Open in IMG/M
3300012918\|Ga0137396_10218123	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300012922\|Ga0137394_11544945	Not Available	522	Open in IMG/M
3300012948\|Ga0126375_10508195	Not Available	900	Open in IMG/M
3300012948\|Ga0126375_11074219	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	661	Open in IMG/M
3300012948\|Ga0126375_11799839	Not Available	534	Open in IMG/M
3300012948\|Ga0126375_11815424	Not Available	533	Open in IMG/M
3300012971\|Ga0126369_10000634	All Organisms → cellular organisms → Bacteria	23192	Open in IMG/M
3300012971\|Ga0126369_10783567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1035	Open in IMG/M
3300012971\|Ga0126369_11979502	Not Available	671	Open in IMG/M
3300015371\|Ga0132258_11075700	All Organisms → cellular organisms → Bacteria	2033	Open in IMG/M
3300015373\|Ga0132257_101348816	Not Available	906	Open in IMG/M
3300018032\|Ga0187788_10362820	Not Available	601	Open in IMG/M
3300021081\|Ga0210379_10427878	Not Available	586	Open in IMG/M
3300025915\|Ga0207693_10432207	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300027654\|Ga0209799_1023250	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300027703\|Ga0207862_1176214	Not Available	637	Open in IMG/M
3300027909\|Ga0209382_10641641	Not Available	1150	Open in IMG/M
3300031820\|Ga0307473_10226951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300032180\|Ga0307471_100836119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1088	Open in IMG/M
3300032261\|Ga0306920_100909614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19	1286	Open in IMG/M
3300032261\|Ga0306920_101850129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	850	Open in IMG/M
3300033805\|Ga0314864_0061214	Not Available	873	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.10%
Host-Associated	Host-Associated	9.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.11%
Plants	Host-Associated → Plants	8.91%
Aquatic	Environmental → Aquatic	0.99%
Human	Host-Associated → Human	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Digestive System	Host-Associated → Human → Digestive System	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.35%
Loam	Environmental → Terrestrial → Soil → Loam	21.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.99%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	54.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_07531482	2228664022	Soil	LMDLYIHSRRRLRLEEESGSADPQSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHGEAAERYAAVEKTRHTVEAIAKRHLRL
Ga0066396_100642861	3300004267	Tropical Forest Soil	RWSHRREVYQPILLSLMDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLKATHQTTGRGEAEARYAAVQKARSIVEVTARRHLRL
Ga0066398_100118711	3300004268	Tropical Forest Soil	RARWGVVRRTGDTAEGTVDSLAPGVPAILLSLMDLYSHSRYRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRPSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0066397_100162181	3300004281	Tropical Forest Soil	YIHSRHRLRLEEEGDSAGPKSRVRLSETIERAASAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATQQNTGRGEADARYAAVEKARRIVEAAAKRHLRL*
Ga0058859_109794771	3300004798	Host-Associated	RRELYQPLLLSLLDLYIHSRHRLRLEEQSDPANPNAQVWLKETNETAAAAMMELQRASAIAVVLGDDVRTALDELETQWLNATLQNTSRGEADERYAAVRKARDIVEATAKRHLRL*
Ga0066388_1001395813	3300005332	Tropical Forest Soil	MDLYSHSRYRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRPSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0066388_1005055231	3300005332	Tropical Forest Soil	SSLTDLYIHSRHRLRLEEDRDPTNPNSQVWLKETTEKAAAAMMELQRASAIAIVLGDDVRTALDELDTQWRNATRQKTSHEEADERYAAVQKAKHIVEATAKRHLRL*
Ga0066388_1009866432	3300005332	Tropical Forest Soil	VYQPILFALMDLHIHSGHRLRLEEETAPADPKSQARLTETIDRAAAAMTDLQRASAIAVVLGDDVRTAVDELQTQWLSATRQNTSHGEAEARYAAVQKARQIVEATAKRHLRV*
Ga0066388_1039266332	3300005332	Tropical Forest Soil	MDLYIHSSHRLRLEEESDPADPKSQAQLNEVTESSGSYDGTPMTAAIAIVLGDDVRTALDELETRWLNATRQKTSLGEADERYAAV
Ga0066388_1055458431	3300005332	Tropical Forest Soil	RLEEESDPANPNSQVWLKETTEKAAAAMMELQRASAIAIVLGDDVRTAFDELEMQWLNATRQNTSRAEAGERYAAVQKARHTIEATAKRHLRL*
Ga0066388_1055807492	3300005332	Tropical Forest Soil	MDVYIHSRHRVRLEDERDPADPKSQLRLNETIERAAASMTELQRVSAIAVVLGDEVRTALDELETQWLDATRQNTSRGEADARYAAVQKTRQIVEATAKRHLRF*
Ga0070708_1003588572	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDLYIHSRHRLRLEEEGDPGDPNSKAQLKEATEKAAAAMTELQRAAAIAIVLGDDVRGALEELDTQWVNATRQKTSLAEADQRYAAVQKARHVVEATAKRHLRL*
Ga0070706_1005413211	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	WGHRREMYQPILLSLMDLYIHSRHRLRLEEESDPADPKSHVRLNETIERAAAAMTELQRVSAIAVVLGDDVRTALDELETQWLTATRQNTGRGEAEARYVAVQKAKHILEATAKQHLRL*
Ga0070699_1000618691	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RRELYHPILVCLMDLYIHSRHRLRLEEEGDPGDPNSKAQLKEATEKAAAAMTELQRAAAIAIVLGDDVRGALEELDTQWVNATRQKTSLAEADERYAAVQKARHVVEATAKRHLRL*
Ga0070699_1005324863	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RHRLRLEEESDSADPKSQVRLNETIERAAAAMIEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0070697_1013060302	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIRHSSHRLRLEEENAPADPKSQARLNEAIERAAAAMIELQRASAIAVVIGDDVRTALDELQTQWLNATRQNTSHGEADARYAAVQKARQTVEAAAKRHLRL*
Ga0066905_1000080588	3300005713	Tropical Forest Soil	HRREVYQPILLSLMDLYIHSRHRLRLEEESDSADPKSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHGEAAERYAAVQKTRHTVEAIAKRHLRL*
Ga0066905_1016256131	3300005713	Tropical Forest Soil	RWSHRREVYQPILLSLMDLYIHSRYRLRLEEESDSVDPKSQVRLNEAIERAAAAMTEVQRVSAIAVVLGDDVHAALEELGTQWLNATDQTTGRGEADVRYAAVQKARRIVEATAKRHLRL
Ga0066905_1018358452	3300005713	Tropical Forest Soil	EWWRHRRELYQPILVSLMDLYIHSRHRLRLETESDPADPKFQTRLEEAMEKAASAMTELQRASAIAIVLGDDVRTGLDELETQWLNATSEKTSLGEAQERYAAVQKARHLVETTARRHLRL*
Ga0066903_1000682921	3300005764	Tropical Forest Soil	RRRERWSHRREVYQPILLSLMDLYIHSRYRLRLEEESDSPDPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQTTGRGEAEARYAAVQRARSVVEATARRHLRL*
Ga0066903_1005083135	3300005764	Tropical Forest Soil	SADPKSQVRLNETIEKAAAAMTEVQRVSAIAVVLGDDVRAALDELGTQWLNATHQDTGRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0075417_100936942	3300006049	Populus Rhizosphere	MDLYIHSRRRLRLEEESGSADPQSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHGEAAERYAAVEKTRHTVEAIAKRHLRL*
Ga0075431_1017631551	3300006847	Populus Rhizosphere	HRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIALVLGDDVRAALDELGTEWLNATHQNTGRGQADARYAAVQKARRIVEATAKRHLKL*
Ga0075426_101699662	3300006903	Populus Rhizosphere	MDLYIHSRHRLRLEEEGDPGDPNSKAQLKEATEKAAAAMTELQRAAAIAIVLGDDVRGTLEELDTQWVNATRQKTSLAEADQRYAAVQKARHVVEATAKRHLRL*
Ga0075436_1004392341	3300006914	Populus Rhizosphere	PILLSLMDLYIHSRRRLRLEEESGSADPQSQVWLKETTERAAAAMTELQRASAIAIVLGDDVHLALDELEAQWQNATRQNTGHGEAAERYAAVEKTRHTVEAIAKRHLRL*
Ga0075418_105693791	3300009100	Populus Rhizosphere	MDLYIHSRRRLRLEEESGSADPQSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHGEAAERYAAVQKTRHTVEAIAK
Ga0114129_102808891	3300009147	Populus Rhizosphere	MDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHENTGGGEAAARYAAVQKAGALSRLL
Ga0126374_111905181	3300009792	Tropical Forest Soil	MDLSIHSRHRLRLEEESDPADPKSQAQLKETTEKAAAAMTEVQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKARDVVD
Ga0126374_115368292	3300009792	Tropical Forest Soil	MDLYIHSRHRLLLEEDRDSADPKSQVRLNETIERAAAAMTEVQRVSAIALVLGDNVRAALDELGTEWLNATHQNTGRAEADARYVAVQKA
Ga0126380_100530643	3300010043	Tropical Forest Soil	MDLYIHSRHRLRLEEEGDSAGPKSRVRLSETIERAASAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATQQNTGRGEADARYAAVEKARRIVEAAAKRHLRL*
Ga0126380_100942061	3300010043	Tropical Forest Soil	MDLYSHSRYRLRLEEESDSADPKSQVRPNETIERAAAAMTEVQRLSAIAVLLGNDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0126380_101611311	3300010043	Tropical Forest Soil	MDLYIHSRHRLRLEEESDPADPKSQAQLNEVTEKAAAAMTELQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKVRHSVEAT
Ga0126380_101888122	3300010043	Tropical Forest Soil	WRHRRELYQPILVSLMDLYIHSRHRLRLEKESDPADPKFQTRLEEAVEKAASAMTELQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKVRHTVEATARRHLRL*
Ga0126380_107802761	3300010043	Tropical Forest Soil	VYQPILVSLMDLYIHSLHRLRLEEAESTDPKSQARLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLSATHQNTGRGEADARHAAVQRARRIVEATAKRHLRL*
Ga0126384_106611052	3300010046	Tropical Forest Soil	SRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQTTGRGEAEARYAAVQRARSIVEATARRHLKL*
Ga0126384_108248151	3300010046	Tropical Forest Soil	MDLYIHSRHRLRLEEESVSADPNSQVQLKETIERAAAAMTDVQRVSAIAVVLGEDVHAALDELGTQWLSATHQNTGRGEAEARYAAVQKARRIVEATAKRHLRL*
Ga0126382_101929923	3300010047	Tropical Forest Soil	MDLYVRSRHRLRLEEESDPADPQLRVSLKETIEGAAAAMTELQRASAIAIVLGDEVRGAIDELEAQWLNATRQSTSRGEANARYAAVQKARQVVEASAKRRLRL*
Ga0126382_101935862	3300010047	Tropical Forest Soil	MDLYIHSRQRLRLEEDGAPADPKAQMRLRETTEKAAAAMTELQRASAIAIVLGDDVRTALDELETQWLSATRPNTSRGEAEERYAAVQ
Ga0126382_104929972	3300010047	Tropical Forest Soil	MDLYIHSRHWLRLEEEGDSDPKSQVQLNETIQKAGAAMAEVQRVSAIAVVLGDDVHAALDELGTQWLDAARQNTGRGEAEARHAAVQRARRTVEATAKRHLRL*
Ga0126382_107224992	3300010047	Tropical Forest Soil	MDLYIHSRLRLRLEEESDSADPKSQVRLNETVERAAAAMTEVQRVSVIAVVLGDDVHEALDELATQWMNAMRQNTGRGEAEARYAA
Ga0126382_112556661	3300010047	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPDSQVRLKGTIERAAAAMTDVQRVSAIAVVLGEDVHAALDELGTQWLSATHQNTGRGEAEARYAAVQKARRIVEATAKRHLRL*
Ga0126382_115699371	3300010047	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHREAAERYAAVQKTRHTVEAIAKRHLRL*
Ga0126370_100043327	3300010358	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLKATHQTTGRGEAEARYAAVQKARSIVEVTARRHLRL*
Ga0126370_100155503	3300010358	Tropical Forest Soil	MDLYSHSRYRLRLEEESDSADPKSQVRLNATIERAAAAMTEVQRPSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0126370_101425292	3300010358	Tropical Forest Soil	MDLDIQSRHRLRLEEESDAANAKSQERLNETIEKAAAAMTEVQRVSAIALVLGDDVRAALDELGTEWLNATHRSTSPLGEADARYAAVQKARRIVEATAKRHLGRL*
Ga0126370_113699151	3300010358	Tropical Forest Soil	RRRERWSHRREVYQPILLSLMDLYIHSRLRLRLEEESDSADPKSQARLTETIDRAAAAMTDLQRASAIAVVLGDDVRTAVDELQTQWLSATRQNTSHGEAEARYAAVQKARQIVEATAKRHLRV*
Ga0126376_100066155	3300010359	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQTTGRGEAEARYAAVQKARSIVEVTARRHLRL*
Ga0126376_100563914	3300010359	Tropical Forest Soil	MDLDIHSRHRLRLEEESDSADPKSRERLKETIERAAAAMTEVQRVSAIAIVLGDDVHAALDELATDWLNATHQNTGRGEAGARYAAVQKARRIVEATAKRHLRL*
Ga0126376_101553251	3300010359	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSASPKSQVRLNETIEKAAAAMTEVQRVSAIAVVLGDDVRAALDELGTQWLNATHQDTGRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0126376_102933803	3300010359	Tropical Forest Soil	MDLYFHSRYRLRLEEESDSADPKSQVRPNETIERAAAAMTEVQRPSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0126376_104528223	3300010359	Tropical Forest Soil	RLEEESDSADPKSQVWLKETTERAAAAMTELQRASAIAIVLGDDVRLALDELEAQWQNATRQNTGHREAAERYAAVQKTRHTVEAIAKRHLRL*
Ga0126376_109454961	3300010359	Tropical Forest Soil	MDLYIHSRHRIRLEEESDSADPKYRVRLNETIERAAAAMTEVQRVSAIALVLGDNVRAALDELGTEWLNATHQHTGRAEADARYAAVQKARRIVEATAKRHLRL*
Ga0126376_111969402	3300010359	Tropical Forest Soil	MDVYIHSRHRLRLEEESDPADPKSQVRLNETMERAAAAMTELQRVSAIAVVLGDDVRMALDELETQWRNATRQNTSRGEADARYAAVQKARQIVEVTAKRHLRL*
Ga0126376_123725602	3300010359	Tropical Forest Soil	MYQPILLSLMDLYIHSRLRLRLEEESDSADPKSKVGLNETIERAAAAMTEVQRVSVIAVVLGDDVHEALDELATQWLNATQQNTGRGEAEARYAAVQKARRIVEATAKRHLRL*
Ga0126376_128898091	3300010359	Tropical Forest Soil	KERWGHRREVYQPILSSLMDLYVRSRHRLRLEEESDPADPKLRVSLKETIEGAATAMTELQRASAIAIVLGDEVRGAIDELEAQWLNATRQSTSRGEANARYAAVQKARQVVEASAKRRLRL*
Ga0126372_100284833	3300010360	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMIEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTGRGEADARYAAVQKARRIVEAAAKRHLRL*
Ga0126372_107242652	3300010360	Tropical Forest Soil	MHGLTSCVLLSWEQSGSVGHLYIHSRHRLRLEEESDSADPQSQVWLKETTERAAAAMTELQRASAIAIVLGDDVCLALDELEAQWQNATRRNTGHGEAAERYAAVQKTRHTVEAIAKRHLRL*
Ga0126378_121926901	3300010361	Tropical Forest Soil	QPILLSLMDLYIHSRHRLRLEEESDPADPKSQAQLNEVTEKAAAAMTELQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKVRHSVEATARRHLRL*
Ga0126377_100402523	3300010362	Tropical Forest Soil	MDLYFHSRYRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRPSAIAVLLGDDVQAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0126377_106207911	3300010362	Tropical Forest Soil	DLYIHSRHRLRLEKESDPADPKFQTRLEEAVEKAASAMTELQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKVRHTVEATARRHLRL*
Ga0126377_111059971	3300010362	Tropical Forest Soil	MDLYVRSRHRLRLEEESDPADPKLRVSLKETIEGAAAAMTELQRASAIAIVLGDEVRGAIDELEAQWLNATRQSTSRGEANARYAAVQKARQVVEASAKRRLRL*
Ga0126377_114853732	3300010362	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVRLNEAIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHETTGRAEADVRYAAVQKARRIVEATAKRHLRL*
Ga0126377_115577581	3300010362	Tropical Forest Soil	HSRYRLRLEEESDSVDPKSQVRLNEAIERAAAAMTEVQRVSAIAVVLGDDVHAALEELGTQWLNATHQTTGRGEADVRYAAVQKARRIVEATAKRHLRL*
Ga0126377_124002261	3300010362	Tropical Forest Soil	MDLYLHSRHRLLLEGEGDAINPKSRVWLKETTERAAAAMTELQRASAIAVVLGDDVRTAIDELETQWLNATRQNTSHGEADARYAAVQRARQIVEASAKRHLRL*
Ga0126379_100828203	3300010366	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSASPKSQVRLNETIEKAAAAMTEVQRVSAIALVLGDNVRAALDELGTEWLNATHQNTGRAEADARYAAVQKARRIVEATAKRHLRL*
Ga0126379_114997532	3300010366	Tropical Forest Soil	MDLYIHSRHRLRLEEESDPADPKSQVRLRETIERATAAMTELQRVSAIAVVLGDDVRAALDELETQWLNATRQNTSRGEADTRYAAVEKTRQIVEATAKRHLRL*
Ga0126379_131729301	3300010366	Tropical Forest Soil	MDLYIHSSHRLRLEEESDPADPKSQAQLNEVTEKAAAAMTELQRASPIAIVLGDDVRTALDELETQWLNATRQKTSLGEADERYAAVQQARHSVEATARRHLRL*
Ga0126379_137257172	3300010366	Tropical Forest Soil	LLSLMDLYIHSRYRLRLEEESDSPDPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQTTGRGEAEARYAAVQRARSVVEATARRHLRL*
Ga0126381_1040394661	3300010376	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSADPKSQVRLNETLEKAAAAMTEVQRVSAIAVVLGDDVRGALDELGTQWLNATHQDTGRGEADARYAAVQKARRICRGHCKRHLTL*
Ga0126383_100311373	3300010398	Tropical Forest Soil	MDLYSHSRYRLRLEEESDSADPKSQVRLTETIERAAAAMTEVQRPSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL*
Ga0126383_100759526	3300010398	Tropical Forest Soil	MDLYIHSRHRLRLEEESDPADPKSQVRLSETIERAAAAMTELQRVSAIAVVLGDDVRAALDELETQWLNATRQNTSRGEADTRYAAVEKTRQIVEATAKRHLRL*
Ga0126383_106379462	3300010398	Tropical Forest Soil	VYQPILESLMDLYVHSRHRLRLEEESDRADPKLRVSLQEAIEGAAAAMRDVQRASAIAVVLGDDVRAAIDELEAQWLNATRQSTSRGEANARYAAVQKARQVVEASAKRQLRL*
Ga0126383_106932922	3300010398	Tropical Forest Soil	MDLYIHSRHRLRLEEESDPADPKSQAQLAEVTEKAAAAMTELQRASAIAIVLGDDVRTALDELETQWLNATREKTSLGEAQERCAAVQKARHSIEATARRHLRL*
Ga0126383_112684591	3300010398	Tropical Forest Soil	MDLYLQSGHRLRLEEESDAADPKSRVWLKETTERAAAAMTELQRASAIAVVLGDDVRTAIDELETQWLNATRQNTSRQEADARYAAVQKARQIVEASAKRHLRL*
Ga0126383_125548861	3300010398	Tropical Forest Soil	LYIHSRHRIRLEEESDSADPKYQVRLNETIERAAAAMTEVQRVSAIALVLGDNVRAALDELGTEWLNATHQNTGRAQADARYVAVQKARRIVEATAKRHLRL*
Ga0137392_103354911	3300011269	Vadose Zone Soil	MDLYIHSRHRLRLEEESDPADPKSHVRLNETIERAAAAMTELQRVSAIAVVLGDDVRAALEELETQWLNATRQNTGRGEAEARYVAVQKAKHILEATAKRHLRL*
Ga0137391_115629072	3300011270	Vadose Zone Soil	ESDPADPKSHVRLNETIERAAAAMTELQRVSAIAVVLGDDVRAALEELETQWLNATRQNTGRGEAEARYVAVQKAKHILEATAKRHLRL*
Ga0137390_106917721	3300012363	Vadose Zone Soil	MYQPILLSLMDLYIHSRHRLRLEEESDPADPKSHVRLNETIERAAAAMTELQRVSAIAVVLGDDVRAALEELETQWLNATRQNTGRGEAEARYVAVQKAKHILEATAKRHLRL*
Ga0137397_108395431	3300012685	Vadose Zone Soil	MDLYIHSRHRLRLEEEGDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLDATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0137396_102181232	3300012918	Vadose Zone Soil	MDLYIHSRQRLRLEEESDSADPKSQVRLNETIEKAAVAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTSRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0137394_115449452	3300012922	Vadose Zone Soil	RLEEDGDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLDATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL*
Ga0126375_105081952	3300012948	Tropical Forest Soil	EEESDSADPKSQVRLNEAIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHETTGRAEADVRYAAVQKARRIVEATAKRHLRL*
Ga0126375_110742191	3300012948	Tropical Forest Soil	MDLYIHSRHRLRLEEESDSASPKSQVRLNETIEKAAAAMTEVQRVSAIALVLGDNVRVALDELGTEWLNATHQNTGRAEADARYVAVQKARRIVEATAKRHLRL*
Ga0126375_117998392	3300012948	Tropical Forest Soil	MDLYIHSRLRLRLEEESDSADPKSQVRLNETVERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLSATHQNTGRGEANARHAAVQKARRIVEATAKRHLRL*
Ga0126375_118154241	3300012948	Tropical Forest Soil	PYIHSRHRLRLEGEGDAADPRSQIWLKETIERTAVAMTELQRASAIAVVLGEDVRTAIDELETQWLNATRQNTSHGEADARYAAVQRARQIVEASAKRHLRL*
Ga0126369_100006345	3300012971	Tropical Forest Soil	MDLYIHSRYRLRLEEESDSPDPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQTTGRGEAEARYAAVQRARSVVEATARRHLRL*
Ga0126369_107835671	3300012971	Tropical Forest Soil	MDLYVHSRHRLRLEEESDRADPKLRVSLTEAIEGAAAAMRDVQRASAIAVVLGDDVRTAIDELEAQWLNATRQSTSRDEADARYTAVQKARQVVEASAKRQL
Ga0126369_119795022	3300012971	Tropical Forest Soil	MDLYIHSRHRLRLEEESDPADPKSQAQLNEVTEKAAAAMTELQRASAIAIVLGDDVRTALDELETQWLNATRQKTSLGEAEERYAAVQKVRHSVEATARRHLRL*
Ga0132258_110757001	3300015371	Arabidopsis Rhizosphere	MDLHIHSRHRLRLEEESDPANPNSQVWLKETTEKAAAAMMELQRASAIAIVIGDDVRTALDELETQWLNATRQNTSRGEADERYTAVQKARHSVEATAKRHLRL*
Ga0132257_1013488161	3300015373	Arabidopsis Rhizosphere	MDLHIHSRHRLRLEEESDPANPNSQVWLKETTEKAAAAMMELQRASAIAIVIGDDVRTALDELETQWLNATLQNTSRGEADERYAAVRKARDIVEATAKRHLRL*
Ga0187788_103628202	3300018032	Tropical Peatland	EVYQPILLSLMDLYIHSRHRLRLEEAGDSADPKSRARLNETIERAAAAMTEVQRVSAIAVVLGDDVLAALDELGTQWLNANRQNTGRGEADARYAAVEKARRIVEAAAKRHLRL
Ga0210379_104278781	3300021081	Groundwater Sediment	ILLSLMDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL
Ga0207693_104322072	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	ILVCLMDLYIHSRHRLRLEEEGDPGDPNSKAQLREATEKAAAAMTELQRASAIAIVLGDDVRGALEELDTQWVNATRQKTSLAEADERYAAVQKARHVVEATAKRHLRL
Ga0209799_10232501	3300027654	Tropical Forest Soil	HRLRLEEESDSADPKSQVRLNETIEKAAAAMTEVQRMSAIAVLLGDDVHAALDELGTQWLNATLQNTGRGETDARYAAVQKARRIVEATAKRHLRL
Ga0207862_11762141	3300027703	Tropical Forest Soil	WGHRRELYQPILLSLMDLYIHSRHRLRLEEEADPANPNSQVWLKETTEKAAAAMMELQRASAIAIVLGDDLRTALDELETQWLNATRQNTSHGEADERYAAVQKARHIVQTAAKRHLRL
Ga0209382_106416411	3300027909	Populus Rhizosphere	VYQPILLSLMDLYIHSRHRLRLEEDSDSADPKSQVRLNETIERAATAMTEVQRVSAIAAVLGDDVHAALDELGTQWLNATRQNTGRGEADARYAAVQKARRIVEATAKRHLKL
Ga0307473_102269513	3300031820	Hardwood Forest Soil	IHSRHRLRLEEEGDPGDPNSKAQLKEATEKAAAAMTELQRAAAIAIVLGDDVRGALEELDTQWVNATRQKTSLAEADQRYAAVQKARHVVEATAKRHLRL
Ga0307471_1008361191	3300032180	Hardwood Forest Soil	WSHRREVYQPILLSLMDLYIHSRHRLRLEEESDSADPKSQVRLNETIERAAAAMTEVQRVSAIAVVLGDDVHAALDELGTQWLNATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL
Ga0306920_1009096141	3300032261	Soil	HRREVYQPILLSLMDLYIHSRHRLRLEEESDSADPKSQVRLNETIDRAAAAMTEVQRVSAIALVLGDDVRAALDELGTEWLNATHQNTGRGEADARYAAVQKARRIVEATAKRHLRL
Ga0306920_1018501292	3300032261	Soil	HRLRLEEESNPADPKSQVRLNETIERAAAAMTELQRVSAIAVVLGDDVRTALDELETQWLNATPHNTARGEAEARYAAVQKARHILEAAAKRHLRL
Ga0314864_0061214_396_710	3300033805	Peatland	MDLYVHSRHRLRLEEESDPANPNSQVWLKETTEKAAAAMMELQRASAIAIVLGDDVRTALDELDTQWLNATRQKTSHGEADERYIAVQKARRIVEATAKRHLRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102750

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences