NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102665

Metagenome / Metatranscriptome Family F102665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102665
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 60 residues
Representative Sequence LANFGPSGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMQRLLKAIRKEWKAPA
Number of Associated Samples 87
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 86.14 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.406 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(35.644 % of family members)
Environment Ontology (ENVO) Unclassified
(37.624 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.554 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.44%    β-sheet: 4.60%    Coil/Unstructured: 68.97%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00475IGPD 78.22
PF00977His_biosynth 6.93
PF00343Phosphorylase 5.94
PF00117GATase 3.96
PF01156IU_nuc_hydro 0.99
PF01261AP_endonuc_2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0131Imidazoleglycerol phosphate dehydratase HisBAmino acid transport and metabolism [E] 78.22
COG0058Glucan phosphorylaseCarbohydrate transport and metabolism [G] 5.94
COG1957Inosine-uridine nucleoside N-ribohydrolaseNucleotide transport and metabolism [F] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.41 %
All OrganismsrootAll Organisms40.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_106867352Not Available758Open in IMG/M
3300001593|JGI12635J15846_10004067All Organisms → cellular organisms → Bacteria12652Open in IMG/M
3300005175|Ga0066673_10685856All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300005177|Ga0066690_10156553All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1500Open in IMG/M
3300005435|Ga0070714_101360968Not Available693Open in IMG/M
3300005569|Ga0066705_10787955All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300005602|Ga0070762_10586458Not Available739Open in IMG/M
3300005610|Ga0070763_10135185All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300006041|Ga0075023_100618092All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae506Open in IMG/M
3300006903|Ga0075426_10813553All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300006904|Ga0075424_100780595All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300007265|Ga0099794_10760801Not Available517Open in IMG/M
3300009012|Ga0066710_101480733All Organisms → cellular organisms → Bacteria → Acidobacteria1048Open in IMG/M
3300009012|Ga0066710_101902857Not Available890Open in IMG/M
3300009088|Ga0099830_10093361All Organisms → cellular organisms → Bacteria2233Open in IMG/M
3300009088|Ga0099830_10791072Not Available782Open in IMG/M
3300009088|Ga0099830_10809007Not Available773Open in IMG/M
3300009089|Ga0099828_10762844Not Available867Open in IMG/M
3300009137|Ga0066709_100646647All Organisms → cellular organisms → Bacteria1513Open in IMG/M
3300010043|Ga0126380_10934772Not Available724Open in IMG/M
3300010335|Ga0134063_10331790Not Available736Open in IMG/M
3300010358|Ga0126370_11146429Not Available719Open in IMG/M
3300010358|Ga0126370_12254752Not Available538Open in IMG/M
3300010360|Ga0126372_11445009Not Available722Open in IMG/M
3300010361|Ga0126378_13286873Not Available514Open in IMG/M
3300011269|Ga0137392_11020895Not Available679Open in IMG/M
3300011269|Ga0137392_11520190Not Available528Open in IMG/M
3300011269|Ga0137392_11625033Not Available504Open in IMG/M
3300011271|Ga0137393_10278252All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300012096|Ga0137389_10020004All Organisms → cellular organisms → Bacteria4690Open in IMG/M
3300012096|Ga0137389_10138029All Organisms → cellular organisms → Bacteria1984Open in IMG/M
3300012189|Ga0137388_11899467Not Available526Open in IMG/M
3300012200|Ga0137382_11203307Not Available538Open in IMG/M
3300012202|Ga0137363_10253597All Organisms → cellular organisms → Bacteria → Acidobacteria1430Open in IMG/M
3300012203|Ga0137399_10241205All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300012205|Ga0137362_11118731Not Available669Open in IMG/M
3300012210|Ga0137378_10022183All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5574Open in IMG/M
3300012211|Ga0137377_11588476Not Available578Open in IMG/M
3300012285|Ga0137370_10018818All Organisms → cellular organisms → Bacteria3433Open in IMG/M
3300012349|Ga0137387_11069495Not Available576Open in IMG/M
3300012361|Ga0137360_10125338All Organisms → cellular organisms → Bacteria2003Open in IMG/M
3300012361|Ga0137360_10377571All Organisms → cellular organisms → Bacteria → Acidobacteria1191Open in IMG/M
3300012361|Ga0137360_11883242Not Available504Open in IMG/M
3300012404|Ga0134024_1099410Not Available503Open in IMG/M
3300012582|Ga0137358_10602412Not Available737Open in IMG/M
3300012922|Ga0137394_10015037All Organisms → cellular organisms → Bacteria6134Open in IMG/M
3300012923|Ga0137359_11142755Not Available665Open in IMG/M
3300012927|Ga0137416_10701213Not Available889Open in IMG/M
3300012929|Ga0137404_11387683Not Available649Open in IMG/M
3300012944|Ga0137410_10564343All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300014166|Ga0134079_10100537All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300015054|Ga0137420_1004833Not Available731Open in IMG/M
3300015054|Ga0137420_1173599All Organisms → cellular organisms → Bacteria1889Open in IMG/M
3300015241|Ga0137418_10596381Not Available867Open in IMG/M
3300017924|Ga0187820_1299777Not Available529Open in IMG/M
3300017934|Ga0187803_10041063Not Available1832Open in IMG/M
3300018482|Ga0066669_12450582All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300020199|Ga0179592_10212486Not Available875Open in IMG/M
3300020579|Ga0210407_10254720All Organisms → cellular organisms → Bacteria1367Open in IMG/M
3300020579|Ga0210407_10617582Not Available844Open in IMG/M
3300020579|Ga0210407_11259184Not Available554Open in IMG/M
3300020580|Ga0210403_10217940Not Available1566Open in IMG/M
3300020581|Ga0210399_10354644Not Available1225Open in IMG/M
3300020581|Ga0210399_11554064Not Available512Open in IMG/M
3300021088|Ga0210404_10405728All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae762Open in IMG/M
3300021168|Ga0210406_10256509Not Available1433Open in IMG/M
3300021171|Ga0210405_10113371All Organisms → cellular organisms → Bacteria2141Open in IMG/M
3300021178|Ga0210408_11316726Not Available547Open in IMG/M
3300021420|Ga0210394_10808267Not Available819Open in IMG/M
3300021478|Ga0210402_12038196All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300021479|Ga0210410_11565730Not Available552Open in IMG/M
3300021559|Ga0210409_11050201Not Available689Open in IMG/M
3300024290|Ga0247667_1112297Not Available502Open in IMG/M
3300025922|Ga0207646_11572690Not Available568Open in IMG/M
3300025961|Ga0207712_11367231Not Available633Open in IMG/M
3300026298|Ga0209236_1038788All Organisms → cellular organisms → Bacteria → Acidobacteria2472Open in IMG/M
3300026309|Ga0209055_1030310All Organisms → cellular organisms → Bacteria2481Open in IMG/M
3300026377|Ga0257171_1071348Not Available609Open in IMG/M
3300026530|Ga0209807_1144186All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300026548|Ga0209161_10232606Not Available982Open in IMG/M
3300026551|Ga0209648_10453007Not Available795Open in IMG/M
3300027527|Ga0209684_1071037Not Available543Open in IMG/M
3300027867|Ga0209167_10123113All Organisms → cellular organisms → Bacteria1343Open in IMG/M
3300027875|Ga0209283_10008874All Organisms → cellular organisms → Bacteria → Acidobacteria5901Open in IMG/M
3300027903|Ga0209488_10106988Not Available2099Open in IMG/M
3300028536|Ga0137415_10079093All Organisms → cellular organisms → Bacteria3147Open in IMG/M
3300028775|Ga0302231_10468129Not Available532Open in IMG/M
3300031128|Ga0170823_10517581Not Available532Open in IMG/M
3300031446|Ga0170820_12075068Not Available763Open in IMG/M
3300031474|Ga0170818_113426420Not Available795Open in IMG/M
3300031753|Ga0307477_10108330All Organisms → cellular organisms → Bacteria → Acidobacteria1933Open in IMG/M
3300031753|Ga0307477_10550398Not Available781Open in IMG/M
3300031754|Ga0307475_11351821Not Available550Open in IMG/M
3300031771|Ga0318546_10299596All Organisms → cellular organisms → Bacteria1113Open in IMG/M
3300031820|Ga0307473_11300634All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300031823|Ga0307478_11080375Not Available670Open in IMG/M
3300032060|Ga0318505_10008626All Organisms → cellular organisms → Bacteria → Acidobacteria3555Open in IMG/M
3300032076|Ga0306924_11486782Not Available719Open in IMG/M
3300032160|Ga0311301_11139241All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300032180|Ga0307471_100324203All Organisms → cellular organisms → Bacteria1639Open in IMG/M
3300032897|Ga0335071_12061364Not Available514Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil35.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.95%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.97%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.97%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.98%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.99%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.99%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.99%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012404Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024290Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026377Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-BEnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10686735213300000955SoilPSAGNFLLANFGPGGPTLFAQLEKKGILLRERTKAIGPGFVRIGIGTRAEMETLLREIRRNGVKR*
JGI12635J15846_1000406713300001593Forest SoilVLADFGSQGPPLFKKLATQGILVRERSKDIGPGFVRISIGTGSEMKRLIKAIQKELGPTFRQEKN*
Ga0066673_1068585623300005175SoilSAGNFLLANFGPSGPALFQKLEKQGILLRERGKDIGPGFVRSTIGTQSEMQRLLKSIRKEWKTPA*
Ga0066690_1015655333300005177SoilLLANFGPSGPALFRKLEKQGILLRERSKDIGPGFVRITIGTQSEMRRLLKTIRKEWKTPV
Ga0070714_10136096823300005435Agricultural SoilGNFLLANFGSSGPALFAKLEQKGILLRDRSRDMGPGFVRITIGTPAEMKILLREIKKTLVPS*
Ga0066705_1078795513300005569SoilLANFGAKGPALFGKLERQGILLRERTKDMGPGFVRISIGTPAEMKKLLKAIRKEWKAPA*
Ga0070762_1058645823300005602SoilGNFLLANFGPSGPALFQNLERQVILLRDRSRDMGPGFVRITIGTEKEMHQLLRAIQKG*
Ga0070763_1013518533300005610SoilPSGPALFQKLERQGILLRDRGKDIGPGFVRITIGTQSEMRQLLKAIRKDWKTPS*
Ga0075023_10061809223300006041WatershedsNFLLANFGPDGPALFYKLEKRGILLRDRSKDIGPGFVRITIGTQSEMKLVLKAIRKEWRAPA*
Ga0075426_1081355313300006903Populus RhizosphereNFGPSGPALFAKLERKGILLRDRSKDMGPGFVRITIGTAKEMQTLLNEIKRTWKSD*
Ga0075424_10078059513300006904Populus RhizosphereAGNFLLANFGPSGPDLFAKLERKGILLRDRSKDMDPGFVRITIGTQNEMQILIREITKNRKPRQRAL*
Ga0099794_1076080123300007265Vadose Zone SoilLANFGPNGPALFQKLEKQGILLRDRSKDIGPGFVRITIGTQYEMRRLLKTIRKEWKVPA*
Ga0066710_10148073333300009012Grasslands SoilPAGPALFAKLERKGILLRDRSKDMGPGFVRITIGTPAEMKTLLHGIRRNWKKDA
Ga0066710_10190285713300009012Grasslands SoilHHGPTDPPLLANLVHKAIPLHDRSKDMGPAFVRITIGTPDQMKTLLREIRRFWKKDV
Ga0099830_1009336113300009088Vadose Zone SoilGNFLLANFGPGGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMRRLLKSIRKEWKTPA*
Ga0099830_1079107213300009088Vadose Zone SoilPALFQKLEKQGILLRERSKDIAPGFVRITIGTQSEMRRLLQTIRKEWKPPA*
Ga0099830_1080900713300009088Vadose Zone SoilNFGPSGPALFQKLEKQGILLRDRSKDIGPGFVRITVGTPSEMRRLVKAIRKQWRIPA*
Ga0099828_1076284423300009089Vadose Zone SoilFVLANFGPRGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMRRLLKTIRKEWKTPA*
Ga0066709_10064664743300009137Grasslands SoilAGNFLLANFGPSGPALFVKLEGKGILLRDRSKDMGPGFVRITIGTPKEMNTLLREIRHNWKSRQRNNQGTI*
Ga0126380_1093477213300010043Tropical Forest SoilSVGNFLLANFGPGGPALFAKLERKGILLRERTKAIAPGFVRIGIGSRKEMETLLREVRQWRKKN*
Ga0134063_1033179023300010335Grasslands SoilAGNFLLADFGPTGPALFRKLEGKGILLRDRSKDMGSGFVRITMGTSEEMRQLLKLIRKEWKPAARVRPLQTN*
Ga0126370_1114642923300010358Tropical Forest SoilFLLADFGPKGPALFRNLEKKGILLRDRSKDMGSGFVRITMGTSAEMRKLLQVIRKEWKLTARTKLLPVN*
Ga0126370_1225475223300010358Tropical Forest SoilFLLANFGASGPALFSTLERKGILLRDRTKDMGPGFVRITIGTASEMKTLLCEIRRNWEDA
Ga0126372_1144500923300010360Tropical Forest SoilEGNFLLADFGPKGPEFFKRLEKRGILLRERTKAIAPGFVRIGIGTQKEMEILLRGIRNFGKRR*
Ga0126378_1328687313300010361Tropical Forest SoilPALVRKLEQKGILLRDRSKDMGSGFARITIGTASEMQQLLKVIRKEWKPTS*
Ga0137392_1102089523300011269Vadose Zone SoilANFGPSGPALFQRLEKQGILLRERSKDIGPGFVRVTIGTQSEMRRLLKSIRKEWKMPA*
Ga0137392_1152019023300011269Vadose Zone SoilFGPSGPALFQKLEKQGILLRDRSKDIGPGFVRITIGTPSEMRRLLKAIRKEWNALV*
Ga0137392_1162503313300011269Vadose Zone SoilNFGPSGPALFQKLEKQGILLRDRSKDIGPGFVRITVGTPSEMRRLVKSIRKQWRIPA*
Ga0137393_1027825233300011271Vadose Zone SoilLANFGPSGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMQRLLKTIRKEWKTPA*
Ga0137389_1002000463300012096Vadose Zone SoilNFLLANFGPSGPPLFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMRRLLKSIRKEWIVPA*
Ga0137389_1013802913300012096Vadose Zone SoilFLLANFGPSGPPLFRKLEKQGILVRDRSKDIGPGFVRISIGTQSEMQQLLKLIRKEWKPPA*
Ga0137388_1189946723300012189Vadose Zone SoilGPGGQALFHKLEKQGILLRDRSKDIGPGFVRITIGTQSEMRRLLRTIGKEWKAPA*
Ga0137382_1120330713300012200Vadose Zone SoilKGPALFRKLEKQGILLRERTQDMGPGFVRISIGTSAEMNRLLKTIRKEWKALA*
Ga0137363_1025359713300012202Vadose Zone SoilNFLLADFGSPGPALFRKLETQAILLRDRSKDMGPGFVRTTIGTQSEMRRLLQAIRKDWKARS*
Ga0137399_1024120533300012203Vadose Zone SoilPSAGNFLLANFGPSGPLLFQKLEKQGILLRERSKDIGPGFVRITIGTSSEMRRLQKTIRKEWKTPA*
Ga0137362_1111873123300012205Vadose Zone SoilLLANFGPSGPALFRKLEKQGILLRERTKDMGPGFVRITIGTSAEMKKLLEAIRKGLKAPA
Ga0137378_1002218373300012210Vadose Zone SoilLLADFGATGPALFRKLEKKGTLLRDRGKDMGSGFVRITMGTSVEMRQLLKVIRKEWKLAEGNVAGRKSN*
Ga0137377_1158847613300012211Vadose Zone SoilSAGNFLLANFGPDGPALFRKLEKQGILLRERTRDMGPGFVRVSIGTSAEMKKLLKAIRKEWKASA*
Ga0137370_1001881863300012285Vadose Zone SoilLANFGPSGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMQRLLKAIRKEWKAPA*
Ga0137387_1106949513300012349Vadose Zone SoilANFGPSGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMQRLLKAIRKEWKAPA*
Ga0137360_1012533813300012361Vadose Zone SoilNFGPSGPAFFAKLERNGILLRDRSRDMGPGLVRITIGTPAEMKILLREIRRRWKQGA*
Ga0137360_1037757113300012361Vadose Zone SoilSAGNFLLANFGPSGPALFRKLDKQGILLRDRSKDIGPGFARISIGTQSEMQRLLKLIRKEWKPPA*
Ga0137360_1188324223300012361Vadose Zone SoilGNFLLGNFGPGGPEFFAKLKRKGILLRDRSKDMGPGFVRITIGTPAEMNTLLDEIRKHWRPR*
Ga0134024_109941013300012404Grasslands SoilANFGPKGPALFRKLEKQGILLRERTKDMGPGFVRISIGTSAEMNRLVKTIRKEWKALA*
Ga0137358_1060241213300012582Vadose Zone SoilPGPTLFRKLEKQGILLRDRSKDMSPGFVRITIGTRAEMRRLLQAIRKEWKARR*
Ga0137394_1001503713300012922Vadose Zone SoilASAGNFLLANFGPGGPQLFQRLEREGILVRERTHDLGPGFVRMTIGTPAEMKLALKKVKRLGF*
Ga0137359_1114275523300012923Vadose Zone SoilKTYPSAGNFLLANFGPSGPALFQKLEQQGILLHERSKDIGPGFVRSTIGTQSEMQRLLKSIRKEWKAPA*
Ga0137416_1070121313300012927Vadose Zone SoilNFLLADFGSPGPALFRKLEEQGILLRERSKDIGPGFVRITIGTRPEMRRLLQAIRKEWKAPS*
Ga0137404_1138768313300012929Vadose Zone SoilSAGNFLLANFGPEGPALFRKLEKQGILLRERTKDMGPGFVRISIGTSAEMKRLQNTIRKEWKAPA*
Ga0137410_1056434313300012944Vadose Zone SoilANFGSSGPALLRMLERQGILLRDRSKDIGPGFVRITIGTRSEMRRLLQAIRKEWKAPF*
Ga0134079_1010053733300014166Grasslands SoilFLLVNFGPSGPVLFRKLEKQGILLRERSKDIRPGFVRITIGTQSEMRRLLKTIRNEWKTP
Ga0137420_100483313300015054Vadose Zone SoilLQRRKFHFGEFNFGPGGPVLFQKLEKQGILLRERSKDIGPGFVRITIGTHSEMRRLLKTIRKEWKKPD*
Ga0137420_117359913300015054Vadose Zone SoilQKLEKALFQKLEKQGILLRDRSKDIGPGFVRITIGTPSEMRRLLKAIRKEWNALV*
Ga0137418_1059638113300015241Vadose Zone SoilGNFLLANFGPSGPALFQKLEKQGILLRERSKDIAPGFVRITIGTPSEMRRLLKTIRKQWKTPV*
Ga0187820_129977713300017924Freshwater SedimentNFGPNGPELFRKLARQGILLRDRSKDMGAGFVRITIGTRSEMLRVMKQIKRYW
Ga0187803_1004106313300017934Freshwater SedimentPKGPALFKRIERQGILLRERSREIAPGFVRITIGTEPEMRKLMRLVHKEYKFIAA
Ga0066669_1245058223300018482Grasslands SoilAGNFLLVNFGPSGPVLFRKLEKQGILLRERSKDIGPGFVRITIGTRSEMRRLLKTIRKEWKTPF
Ga0179592_1021248613300020199Vadose Zone SoilNFLLANFGPGGPRLFQRLEREGLLLRERTKDLGPGFVRITIGTQAEMKLLLKKMKRLGFSADTRR
Ga0210407_1025472033300020579SoilNFLLANFGPAGSTLFRRLEKRGILLRGRSREIGPGFVRITIGTPPEMRKLVKLIRREWKKPD
Ga0210407_1061758213300020579SoilGGPVLFRNLEKQGILLRERTKDMGPGFVRISIGTSAEMKKLLKAIRKEWKAPA
Ga0210407_1125918413300020579SoilADFGSPGPALFKKLAAQGILVRERSKEIGPGFVRISIGTGPEMKRLVEVIQKEVRETFRRGRN
Ga0210403_1021794043300020580SoilFGPTGPALFAKLARKGILIRDRSKDMGPGFVRITIGTPAEMKTLLAEIRKKWRYR
Ga0210399_1035464413300020581SoilTFPSAGNFLLANFGPGGPRLFQRLEREGILLRERTKEIGPGFVRITIGTQAEMKLLLKRIKWLEF
Ga0210399_1155406423300020581SoilTGPALFQRLERRGILLRERSREIGQGFVRITIGTPSEMQKLVKLIRQEMKK
Ga0210404_1040572823300021088SoilSAGNFLLANFGPNGPALFQRLEKQGILLRDKSTDIGPGFVRITIGTLSEMQRLLKLIRKDWKPRA
Ga0210406_1025650913300021168SoilKTFAGAGNFLLANFGPGGPRLFQRLEREGILLRERTKELGPGFVRITIGTQAEMKLLLKKIRRLAF
Ga0210405_1011337143300021171SoilAGNFLLADFGSPGPALFKKLAAQGILVRERSKEIGPGFVRISIGTGPEMKRLVEVIQKEVRETFRRGRN
Ga0210408_1131672623300021178SoilGPALFKHLERQGILLRERSREIAPGFVRITIGTSTELRTLLKVIHKEYKSPA
Ga0210394_1080826713300021420SoilFLLANFGPGGPELFKKLERQGILLRERSKDMGPGFVRITIGTKSEMERLMKQIKRHR
Ga0210402_1203819613300021478SoilLGVKTFASAGNFLLANFGPGGPKLFQRMEREGILVRERTHDLGPGFVRITIGTPAEMKLALKKIRRLGF
Ga0210410_1156573013300021479SoilLANFGPSGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMSRLLKTIRKEWNTTT
Ga0210409_1105020113300021559SoilFLLADFGPSGPLLFRKLEKQGILLRERTKDMGAGFVRIGIGTSAEMKKLLKAIRKEWRAP
Ga0247667_111229723300024290SoilFGPTGPALFARLERQGILLRDRGRDMGPGFVRITIGTEKEMRQLLKAIQKG
Ga0207646_1157269023300025922Corn, Switchgrass And Miscanthus RhizosphereAGNFLLADFGSPGPALFRKLETQGILLRDRSKDMRPGFVRITIGTRPEMRRLLQAIRKEWKARR
Ga0207712_1136723113300025961Switchgrass RhizosphereANFGPSGPDLFAKLERKGILLRDRSKDMDPGFVRITIGTQNEMQILIREITKNRKPRQRA
Ga0209236_103878853300026298Grasslands SoilSPGPTLFRKLEKQGILLRDRSKDMSPGFVRITIGTRAEMRRLLQAIRKEWKARR
Ga0209055_103031053300026309SoilLLANFGAKGPALFGKLERQGILLRERTKDMGPGFVRISIGTPAEMKKLLKAIRKEWKAPA
Ga0257171_107134823300026377SoilTYPSAGNFLLANFGPGGPTLFAQLEKKGILLRERTKAIGPGFVRIGIGTRAEMETLLREIRRNGVKR
Ga0209807_114418633300026530SoilGPALFGKLERQGILLRERTKDMGPGFVRISIGTPAEMKKLLKAIRKEWKAPA
Ga0209161_1023260613300026548SoilFLLANFGAKGPALFGKLERQGILLRERTKDMGPGFVRISIGTPAEMKKLLKAIRKEWKAP
Ga0209648_1045300723300026551Grasslands SoilPAFFAKLERKGILLRDRSRDMGPGLVRITIGTPAEMKILLREIRRTWKQGA
Ga0209684_107103723300027527Tropical Forest SoilAGNFLLANFGPSGPALFATLTRKGILLRDRSKDMGPGFVRITIGTQREMQTLLREIKRNWKPEQRSK
Ga0209167_1012311333300027867Surface SoilVATYPSAGNFLLADFGPSGPEMCRHLEKKGILLRERSKEIGPGFVRITIGTKTEMERLGRFIKGLR
Ga0209283_1000887473300027875Vadose Zone SoilSAGNFLLANFGPGGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQSEMRRLLKTIRKE
Ga0209488_1010698823300027903Vadose Zone SoilAGNFILANFGPGGPKLCRRLERRGILLRERTKEMGAGFVRITIGTRSEMERLLKEIKRYR
Ga0137415_1007909313300028536Vadose Zone SoilVKTYPSAGNFLLENFGPSGPALFQKLEKQGILLRERSKDIGPGFVRSTIGTQSEMQRLLKSIRKEWKAPA
Ga0302231_1046812923300028775PalsaNFLLANFGPTSPAMCARLERDGILVRERTKEIGVGFVRVSIGTRDEMKRLLSKIRLYRS
Ga0170823_1051758123300031128Forest SoilFLLANFGPTGPTLFATLAREGILLRDRGKDIGPGFVRITIGTPAEMKTLLAEIRKNWRPS
Ga0170820_1207506823300031446Forest SoilVLANFGPTGPALFAKLERKGILLRDRSRDMGPGFVRITIGTSAEMKILLREIRRTWKKDA
Ga0170818_11342642013300031474Forest SoilANFGPTGPAFFAKLERKGILLRDRAKDMGPGFVRITIGTPAEMKTLLAEIRKNWRPS
Ga0307477_1010833013300031753Hardwood Forest SoilGNFLLANFGPDGPKLFRTLEKQGILLRERTKDMGAGFVRITIGTSSEMKKLLKAIRKEWKAPV
Ga0307477_1055039823300031753Hardwood Forest SoilGPSGPPLFQNLEKQGILLRDRSKDIGPGFVRITIGTQSEMRRLLKSIRKEWKAPA
Ga0307475_1135182113300031754Hardwood Forest SoilPAFFAKLERKGILLRDRSRDMGPGLVRITIGTPAEMKLLLREIRRSWKQGA
Ga0318546_1029959633300031771SoilANFGPGGPALFAKLERRGILLRDRSKDMGPGFARITIGTPREMRKLIEEIRSNWKHRQKR
Ga0307473_1130063423300031820Hardwood Forest SoilGPRGPALFGKLERQGILLRERSREIAPGFVRISIGTPGEMRALMDSIRKDYKPKAI
Ga0307478_1108037513300031823Hardwood Forest SoilKTFPSAGNFLLANFGPHGPQLLQRLEREGILLRERSKDIGRGFARITVGTQMEMNLLLKKIKQLGLNANRRR
Ga0318505_1000862663300032060SoilLLADFGPTGPELFRKLERQGILLRDRSKDMGSGFVRITMGTSAEMQRLVKIIRKEWKPVARHGVTPKVN
Ga0306924_1148678223300032076SoilPGGPALFAKLERRGILLRDRSKDMGPGFARITIGTPREMRKLIEEIRSNWKHRQKRD
Ga0311301_1113924133300032160Peatlands SoilFGPNGPALFQKLEKQGILLRERSKDIGPGFVRITIGTQAEMRRLLKSIQKEWKTTPG
Ga0307471_10032420343300032180Hardwood Forest SoilLANFGTDGPKLFRTLAKQGILLRERTKDMGAGFVRITIGTSSEMKKLLKAIRKEWKAPV
Ga0335071_1206136413300032897SoilLLADFGASGPALFAKLERKGILLRPRSKDMGPGYVRITIGTEREMKTLLDEIARHWKGRA


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