NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102567

Metagenome / Metatranscriptome Family F102567

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102567
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 48 residues
Representative Sequence YVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI
Number of Associated Samples 85
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.19 %
% of genes near scaffold ends (potentially truncated) 86.14 %
% of genes from short scaffolds (< 2000 bps) 87.13 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.030 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine
(23.762 % of family members)
Environment Ontology (ENVO) Unclassified
(60.396 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(54.455 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 68.18%    β-sheet: 0.00%    Coil/Unstructured: 31.82%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF03712Cu2_monoox_C 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.03 %
All OrganismsrootAll Organisms2.97 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035265000|ErSWdraf_F5BXKTZ02HIWLANot Available586Open in IMG/M
3300002835|B570J40625_100790824Not Available835Open in IMG/M
3300002835|B570J40625_101637585Not Available525Open in IMG/M
3300003394|JGI25907J50239_1033317Not Available1095Open in IMG/M
3300003394|JGI25907J50239_1100274Not Available565Open in IMG/M
3300003394|JGI25907J50239_1102722Not Available557Open in IMG/M
3300003411|JGI25911J50253_10189639Not Available572Open in IMG/M
3300003411|JGI25911J50253_10207659Not Available539Open in IMG/M
3300003429|JGI25914J50564_10155630Not Available548Open in IMG/M
3300003497|JGI25925J51416_10029324Not Available1578Open in IMG/M
3300003497|JGI25925J51416_10131214Not Available579Open in IMG/M
3300004112|Ga0065166_10288352Not Available668Open in IMG/M
3300004112|Ga0065166_10369981Not Available595Open in IMG/M
3300005517|Ga0070374_10615666Not Available538Open in IMG/M
3300005585|Ga0049084_10113013Not Available967Open in IMG/M
3300005662|Ga0078894_11301345Not Available611Open in IMG/M
3300005805|Ga0079957_1360420Not Available633Open in IMG/M
3300007547|Ga0102875_1237339Not Available559Open in IMG/M
3300007548|Ga0102877_1128160Not Available720Open in IMG/M
3300007549|Ga0102879_1164969Not Available675Open in IMG/M
3300007560|Ga0102913_1075479Not Available1097Open in IMG/M
3300007560|Ga0102913_1225362Not Available600Open in IMG/M
3300007562|Ga0102915_1218414Not Available618Open in IMG/M
3300007603|Ga0102921_1318631Not Available554Open in IMG/M
3300007606|Ga0102923_1101707Not Available903Open in IMG/M
3300007625|Ga0102870_1065922Not Available1068Open in IMG/M
3300007629|Ga0102895_1068345Not Available914Open in IMG/M
3300007630|Ga0102903_1035520Not Available1401Open in IMG/M
3300007642|Ga0102876_1050895Not Available1156Open in IMG/M
3300008113|Ga0114346_1058516Not Available3434Open in IMG/M
3300008114|Ga0114347_1198900Not Available669Open in IMG/M
3300008119|Ga0114354_1173781Not Available777Open in IMG/M
3300008267|Ga0114364_1142012Not Available677Open in IMG/M
3300008950|Ga0102891_1117799Not Available795Open in IMG/M
3300009026|Ga0102829_1070860Not Available1065Open in IMG/M
3300009049|Ga0102911_1118570Not Available755Open in IMG/M
3300009052|Ga0102886_1151251Not Available692Open in IMG/M
3300009071|Ga0115566_10798424Not Available519Open in IMG/M
3300009079|Ga0102814_10301227Not Available872Open in IMG/M
3300011268|Ga0151620_1003296All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon6016Open in IMG/M
3300011268|Ga0151620_1267775Not Available505Open in IMG/M
3300012714|Ga0157601_1141637All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus761Open in IMG/M
3300013004|Ga0164293_10486992Not Available816Open in IMG/M
3300013004|Ga0164293_10498858Not Available804Open in IMG/M
3300013004|Ga0164293_10627287Not Available696Open in IMG/M
3300017701|Ga0181364_1069611Not Available539Open in IMG/M
3300020141|Ga0211732_1111513Not Available721Open in IMG/M
3300020151|Ga0211736_10795302Not Available921Open in IMG/M
3300020162|Ga0211735_11579650Not Available675Open in IMG/M
3300020172|Ga0211729_10319102Not Available778Open in IMG/M
3300020183|Ga0194115_10244276Not Available853Open in IMG/M
3300020205|Ga0211731_11272703Not Available627Open in IMG/M
3300020563|Ga0208082_1044020Not Available793Open in IMG/M
3300024346|Ga0244775_11001806Not Available659Open in IMG/M
3300024348|Ga0244776_10375160Not Available950Open in IMG/M
3300025869|Ga0209308_10431269Not Available519Open in IMG/M
3300027125|Ga0255106_1058739Not Available514Open in IMG/M
3300027139|Ga0255082_1026056Not Available959Open in IMG/M
3300027147|Ga0255113_1014170Not Available1776Open in IMG/M
3300027213|Ga0208555_1021185Not Available1028Open in IMG/M
3300027278|Ga0208439_1025612Not Available1201Open in IMG/M
3300027294|Ga0208441_1030476Not Available1285Open in IMG/M
3300027304|Ga0208810_1005381Not Available2996Open in IMG/M
3300027314|Ga0208811_1066543Not Available774Open in IMG/M
3300027418|Ga0208022_1068375Not Available762Open in IMG/M
3300027529|Ga0255077_1109851Not Available523Open in IMG/M
3300027644|Ga0209356_1157434Not Available632Open in IMG/M
3300027679|Ga0209769_1016421Not Available2635Open in IMG/M
3300027732|Ga0209442_1228830Not Available674Open in IMG/M
3300027732|Ga0209442_1231906Not Available668Open in IMG/M
3300027756|Ga0209444_10200838Not Available723Open in IMG/M
3300027756|Ga0209444_10202593Not Available719Open in IMG/M
3300027756|Ga0209444_10320640Not Available511Open in IMG/M
3300027769|Ga0209770_10268342Not Available657Open in IMG/M
3300027772|Ga0209768_10278367Not Available713Open in IMG/M
3300027805|Ga0209229_10078912Not Available1478Open in IMG/M
3300027892|Ga0209550_10215843Not Available1296Open in IMG/M
3300027892|Ga0209550_10326683Not Available976Open in IMG/M
3300032116|Ga0315903_11120399Not Available538Open in IMG/M
3300033816|Ga0334980_0389324Not Available529Open in IMG/M
3300033993|Ga0334994_0062007Not Available2294Open in IMG/M
3300033994|Ga0334996_0397714Not Available648Open in IMG/M
3300033996|Ga0334979_0235639Not Available1064Open in IMG/M
3300034023|Ga0335021_0495342Not Available622Open in IMG/M
3300034062|Ga0334995_0158950Not Available1621Open in IMG/M
3300034082|Ga0335020_0404632Not Available657Open in IMG/M
3300034082|Ga0335020_0512326Not Available568Open in IMG/M
3300034093|Ga0335012_0361305Not Available720Open in IMG/M
3300034102|Ga0335029_0027367All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon4309Open in IMG/M
3300034116|Ga0335068_0210573Not Available1014Open in IMG/M
3300034120|Ga0335056_0105011Not Available1733Open in IMG/M
3300034120|Ga0335056_0714203Not Available507Open in IMG/M
3300034121|Ga0335058_0759975Not Available531Open in IMG/M
3300034272|Ga0335049_0209161Not Available1365Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake23.76%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine23.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater19.80%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.95%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater2.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater1.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.99%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.99%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment0.99%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.99%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2035265000Freshwater microbial communities from Swedish Lakes - surface of Lake ErkenEnvironmentalOpen in IMG/M
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300003394Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003411Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SDEnvironmentalOpen in IMG/M
3300003429Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SNEnvironmentalOpen in IMG/M
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300005517Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)EnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300007547Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02EnvironmentalOpen in IMG/M
3300007548Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3EnvironmentalOpen in IMG/M
3300007549Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02EnvironmentalOpen in IMG/M
3300007560Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02EnvironmentalOpen in IMG/M
3300007562Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02EnvironmentalOpen in IMG/M
3300007603Estuarine microbial communities from the Columbia River estuary - metaG 1568-02EnvironmentalOpen in IMG/M
3300007606Estuarine microbial communities from the Columbia River estuary - metaG 1569-02EnvironmentalOpen in IMG/M
3300007625Estuarine microbial communities from the Columbia River estuary - metaG 1546B-02EnvironmentalOpen in IMG/M
3300007629Estuarine microbial communities from the Columbia River estuary - metaG 1554B-3EnvironmentalOpen in IMG/M
3300007630Estuarine microbial communities from the Columbia River estuary - metaG 1555C-02EnvironmentalOpen in IMG/M
3300007642Estuarine microbial communities from the Columbia River estuary - metaG 1548A-3EnvironmentalOpen in IMG/M
3300008111Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008119Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008950Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009049Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02EnvironmentalOpen in IMG/M
3300009052Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300011268Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555EnvironmentalOpen in IMG/M
3300012714Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES125 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020197Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65mEnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020563Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)EnvironmentalOpen in IMG/M
3300020578Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35mEnvironmentalOpen in IMG/M
3300021424Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surfaceEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300025869Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)EnvironmentalOpen in IMG/M
3300027125Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8hEnvironmentalOpen in IMG/M
3300027139Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8hEnvironmentalOpen in IMG/M
3300027147Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8hEnvironmentalOpen in IMG/M
3300027213Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027278Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703 (SPAdes)EnvironmentalOpen in IMG/M
3300027294Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027304Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027314Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027418Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)EnvironmentalOpen in IMG/M
3300027529Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8hEnvironmentalOpen in IMG/M
3300027644Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027679Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027732Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027805Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034023Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034120Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172EnvironmentalOpen in IMG/M
3300034121Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ErSWdraft_30243902035265000FreshwaterVGKRYVDTVRAISAIEALDAEKVIAKGAKSILKEMDAAGIVPLDVESI
B570J40625_10079082413300002835FreshwaterYVSLDRAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDNI*
B570J40625_10163758513300002835FreshwaterSLDRAKAIIEALDAEKLINKGAKSVLKEMDAAGIVPLDVENI*
JGI25907J50239_103331733300003394Freshwater LakeFVSAAPAWAKAIVGKRYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI
JGI25907J50239_110027413300003394Freshwater LakeYVSLDRAKATIEALDAEKLISKGARNLLKEMDAAGIVPLDVESI*
JGI25907J50239_110272213300003394Freshwater LakeAWAKGIIGKRYVSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDSI*
JGI25911J50253_1018963923300003411Freshwater LakeAAPAWAKGIIGKRYVSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDSI*
JGI25911J50253_1020765923300003411Freshwater LakeAIVGKRYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI*
JGI25914J50564_1015563023300003429Freshwater LakeAWAKAIVGKRYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI*
JGI25925J51416_1002932413300003497Freshwater LakeISAAPAWAKGIIGKRYVSLDKAISIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
JGI25925J51416_1013121413300003497Freshwater LakeISAAPAWAKGIIGKRYVSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0065166_1028835223300004112Freshwater LakeGKRYVNEDRAKAVIEALDAEKLINKGAKSILKEMDAAGIVPLDIESI*
Ga0065166_1036998113300004112Freshwater LakeDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0070374_1061566623300005517Freshwater LakeMVFISAAPAWAKGIIGKRYVSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0049084_1011301333300005585Freshwater LenticIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0078894_1130134523300005662Freshwater LakeAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0079957_136042023300005805LakeTTYAITAIEALDSEKVIAKGAKAVLKEMDAAGIVPLNVDSI*
Ga0102875_123733923300007547EstuarineVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI*
Ga0102877_112816013300007548EstuarineIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0102879_116496913300007549EstuarineGAKAIVSKRYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0102913_107547913300007560EstuarineAIIEALDAEKLINKGAKSILKEMDAAGIVPLDVESI*
Ga0102913_122536213300007560EstuarineSLDRAKTIIETLDAEKLISKGAKSVLKEMDAAGIVPLDVDSI*
Ga0102915_121841423300007562EstuarineAIVGKRYVSLDRAKAIIEALDAEKLITKGAKSILKEMDAAGITPLDVDNI*
Ga0102921_131863123300007603EstuarineIVGKRYVSLDRAKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVENI*
Ga0102923_110170733300007606EstuarineDGPVWAKTIVGKSYVNLDRAKAIIEALDAEKLISKGAKSVLKEMDKAGITPLDVDTI*
Ga0102870_106592233300007625EstuarineRYVNETRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDNI*
Ga0102895_106834533300007629EstuarineWAKTIVGKRYVNLDRAKAIIEALDAEKLISKGAKSVLKEMDAAGIVPLDVESI*
Ga0102903_103552013300007630EstuarineGKRYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0102876_105089513300007642EstuarineWAKAIVGKRYVSLDRAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0114344_105138243300008111Freshwater, PlanktonPVWAKSIVGKRYANTTYAINAIEALDSEKVIAKGAKSILKEMDAAGIVPLDVENI*
Ga0114346_105851673300008113Freshwater, PlanktonVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI*
Ga0114347_119890013300008114Freshwater, PlanktonVNEDRAKAVIEALDAEKLINKGAKSILKEMDAAGIVPLDIESI*
Ga0114354_117378113300008119Freshwater, PlanktonIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI*
Ga0114364_114201213300008267Freshwater, PlanktonIEALDAEKLINKGAKSVLKEMDAAGIVPLDVESI*
Ga0102891_111779933300008950EstuarineAWAKAIVGKRYVSLDRAKATIEALDAEKLISKGAKNLLKEMDAAGITPLDVDNI*
Ga0102829_107086013300009026EstuarineVIVGKRYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0102911_111857013300009049EstuarineDMVFISAAPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0102886_115125133300009052EstuarineYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0115566_1079842413300009071Pelagic MarineVNETRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0102814_1030122733300009079EstuarineAPAWAKAIVGKRYVSLDRAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI*
Ga0151620_100329643300011268FreshwaterVGKRYANATYAISAIEALDSEKVIAKGAKSILKEMDAAGIVPLDVHSI*
Ga0151620_126777523300011268FreshwaterDRAKAIIEALDAEKLINKGAKSILKEMDAAGIVPLDVENI*
Ga0157601_114163713300012714FreshwaterIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI*
Ga0164293_1048699233300013004FreshwaterYVSLDRAKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVDSI*
Ga0164293_1049885813300013004FreshwaterPAWAKAIVGKRYVSLDRAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDADNI*
Ga0164293_1062728713300013004FreshwaterSAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI*
(restricted) Ga0172372_1020303043300013132FreshwaterYANTTYAINAIEALDSEKVIAKGAKSILKEMDAAGIVPLNVENI*
Ga0181364_106961123300017701Freshwater LakeAPAWAKAIVGKRYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI
Ga0211732_111151313300020141FreshwaterYVNLERAVSIIETLDAEKLISKGAKNLLKEMDAAGLVPLDMDSI
Ga0211736_1079530243300020151FreshwaterPIWAKSIVGKRYVSAGRAIAIIETLDAEKNIAKGAKSIIKEMEAAGITPLSTDNEVVTEG
Ga0211735_1157965013300020162FreshwaterWAKAIIGKRYVNLERAVSIIETLDAEKLISKGAKNLLKEMDAAGITPLDMDSI
Ga0211729_1031910233300020172FreshwaterYVNLERAVSIIETLDAEKLISKGAKNLLKEMDAAGITPLDMDSI
Ga0194134_1029301423300020179Freshwater LakeSIIGKRYANPTYAINAIEALDSEKVIAKGAKSVLKEMDAAGMTPLDTAEIETEEK
Ga0194115_1024427623300020183Freshwater LakeNAIEALDSEKVIAKGAKSVLKEMDAAGIVPLNVESI
Ga0194128_1042528823300020197Freshwater LakeGKRYANPTYAINAIEALDSEKVIAKGAKSVLKEMDAAGMTPLDTAEIETEEK
Ga0211731_1127270313300020205FreshwaterVSIIETLDAEKLISKGAKNLLKEMDAAGITPLDMDSI
Ga0208082_104402033300020563FreshwaterYVSLDRAKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVENI
Ga0194129_1048784023300020578Freshwater LakeRYANPTYAINAIEALDSEKVIAKGAKSVLKEMDAAGMTPLDTAEIETEEK
Ga0194117_1049802123300021424Freshwater LakeKRYANPTYAINAIEALDSEKVIAKGAKSVLKEMDAAGMTPLDTAEIETEEK
Ga0244775_1100180613300024346EstuarineNETRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0244776_1037516013300024348EstuarinePAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI
Ga0209308_1043126913300025869Pelagic MarineVNETRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0255106_105873913300027125FreshwaterWAKAIVGKRYVSLDRAKATIEALDAEKLISKGAKNLLKEMDAAGIVPLDVESI
Ga0255082_102605633300027139FreshwaterIFISAAPAWAKAIVGKRYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDS
Ga0255113_101417053300027147FreshwaterAWAKAIVGKRYVSLDRAKATIEALDAEKLISKGAKNLLKEMDAAGIVPLDVESI
Ga0208555_102118533300027213EstuarineKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0208439_102561233300027278EstuarineLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0208441_103047613300027294EstuarineIVGKRYVSLDKAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0208810_100538113300027304EstuarineAPAWAKAIVGKRYVSLDRAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0208811_106654313300027314EstuarineAWAKAIVGKRYVSLDRAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDNI
Ga0208022_106837533300027418EstuarineVDRAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0255077_110985123300027529FreshwaterAKAIIEALDAEKLINKGAKSILKEMDAAGIVPLDVESI
Ga0209356_115743423300027644Freshwater LakeVFISAAPAWAKGIIGKRYVSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDS
Ga0209769_101642193300027679Freshwater LakeDKAISIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209442_122883023300027732Freshwater LakeISIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209442_123190623300027732Freshwater LakeDKAKAIIEALDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209444_1020083813300027756Freshwater LakeYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDSI
Ga0209444_1020259323300027756Freshwater LakeAAPAWAKAIVGKRYVSLDKAKAIIEALDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209444_1032064023300027756Freshwater LakeYVSLDRAKATIEALDAEKLISKGARNLLKEMDAAGIVPLDVESI
Ga0209770_1026834223300027769Freshwater LakeAKSIVGKRYVNEDRAKAVIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0209768_1027836723300027772Freshwater LakeSLDKAISIIETLDAEKIISKGAKNLLKEMDAAGIVPLDVDSI
Ga0209229_1007891213300027805Freshwater And SedimentKRYVNLERAVSIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVESI
Ga0209550_1021584333300027892Freshwater LakeKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI
Ga0209550_1032668333300027892Freshwater LakeKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGIVPLDVESI
Ga0315900_1018692913300031787FreshwaterIVGKRYANTTYAINAIEALDSEKVIAKGAKSILKEMDAAGIVPLDVENI
Ga0315903_1112039913300032116FreshwaterYINEDRAKAIIEALDAEKLISKGAKSVLKEMDAAGIVPLDVESI
Ga0334980_0389324_349_5283300033816FreshwaterISAAPAWAKTIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0334994_0062007_2161_22923300033993FreshwaterVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0334996_0397714_535_6483300033994FreshwaterKAVIEALDAEKLINKGAKSILKEMDAAGIVPLDIESI
Ga0334979_0235639_839_10273300033996FreshwaterMVFISAAPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0335021_0495342_454_6213300034023FreshwaterPAWAKAIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0334995_0158950_9_1973300034062FreshwaterMVFISAAPAWAKTIVGKRYVSLDRAKAIIETLDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0335020_0404632_11_1423300034082FreshwaterVSLDRAKAIIEALDAEKLISKGAKNLLKEMDAAGITPLDVDNI
Ga0335020_0512326_2_1093300034082FreshwaterFIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0335012_0361305_597_7193300034093FreshwaterDRAKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVESI
Ga0335029_0027367_4189_43083300034102FreshwaterRAKAIIEALDAEKLISKGAKSVLKEMDAAGITPLDVDSI
Ga0335068_0210573_839_9703300034116FreshwaterVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGIVPLDVESI
Ga0335056_0105011_3_1493300034120FreshwaterVGKRYVNLDRAKAIIEALDAEKLISKGAKSVLKEMDKAGITPLDVDTI
Ga0335056_0714203_393_5063300034120FreshwaterKAIIEALDAEKAISKGAKSILKEMDANGIVPLDVESI
Ga0335058_0759975_373_5313300034121FreshwaterAKAIVGKRYVSLDRAKTIIETLDAEKLISKGAKNLLKEMDAAGIVPLDVDSI
Ga0335049_0209161_2_1093300034272FreshwaterIIEALDAEKAISKGAKSILKEMDANGIVPLDVDSI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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