Metagenome / Metatranscriptome Family F102239

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Overview

Basic Information
Family ID	F102239
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVRF
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.15 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.010 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.555 % of family members)
Environment Ontology (ENVO)	Unclassified (30.693 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.307 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
All Organisms	root	All Organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
cellular organisms	root	All Organisms → cellular organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10188224	Not Available	837	Open in IMG/M
3300004100\|Ga0058904_1430782	Not Available	748	Open in IMG/M
3300004115\|Ga0058890_100082	Not Available	713	Open in IMG/M
3300011080\|Ga0138568_1197485	Not Available	658	Open in IMG/M
3300011120\|Ga0150983_10057303	Not Available	520	Open in IMG/M
3300011120\|Ga0150983_13727086	Not Available	562	Open in IMG/M
3300011120\|Ga0150983_13992407	Not Available	508	Open in IMG/M
3300016705\|Ga0181507_1423248	Not Available	548	Open in IMG/M
3300016750\|Ga0181505_11052290	Not Available	582	Open in IMG/M
3300019157\|Ga0184573_110918	Not Available	775	Open in IMG/M
3300019165\|Ga0184589_105221	Not Available	667	Open in IMG/M
3300019165\|Ga0184589_133250	Not Available	792	Open in IMG/M
3300019170\|Ga0184570_112772	Not Available	775	Open in IMG/M
3300019181\|Ga0184594_111084	Not Available	758	Open in IMG/M
3300019183\|Ga0184601_131888	Not Available	700	Open in IMG/M
3300019186\|Ga0184588_136152	Not Available	785	Open in IMG/M
3300019190\|Ga0184600_129353	Not Available	819	Open in IMG/M
3300019192\|Ga0184603_121730	Not Available	830	Open in IMG/M
3300019194\|Ga0184586_144990	Not Available	733	Open in IMG/M
3300019211\|Ga0187799_1204554	Not Available	758	Open in IMG/M
3300019242\|Ga0181502_1500797	Not Available	872	Open in IMG/M
3300019256\|Ga0181508_1200794	Not Available	832	Open in IMG/M
3300019256\|Ga0181508_1595225	Not Available	643	Open in IMG/M
3300019270\|Ga0181512_1267295	Not Available	721	Open in IMG/M
3300019275\|Ga0187798_1673561	Not Available	738	Open in IMG/M
3300019278\|Ga0187800_1031789	Not Available	741	Open in IMG/M
3300019278\|Ga0187800_1136799	Not Available	740	Open in IMG/M
3300019278\|Ga0187800_1198012	Not Available	776	Open in IMG/M
3300019278\|Ga0187800_1429350	Not Available	807	Open in IMG/M
3300019278\|Ga0187800_1816050	Not Available	735	Open in IMG/M
3300019284\|Ga0187797_1105003	Not Available	739	Open in IMG/M
3300019284\|Ga0187797_1191491	Not Available	774	Open in IMG/M
3300019284\|Ga0187797_1408183	Not Available	521	Open in IMG/M
3300019284\|Ga0187797_1492025	Not Available	505	Open in IMG/M
3300019284\|Ga0187797_1500896	Not Available	736	Open in IMG/M
3300021855\|Ga0213854_1247559	Not Available	820	Open in IMG/M
3300021860\|Ga0213851_1416401	Not Available	787	Open in IMG/M
3300022499\|Ga0242641_1006377	Not Available	955	Open in IMG/M
3300022500\|Ga0242643_106137	Not Available	795	Open in IMG/M
3300022500\|Ga0242643_108303	Not Available	720	Open in IMG/M
3300022502\|Ga0242646_1005499	Not Available	937	Open in IMG/M
3300022503\|Ga0242650_1008772	Not Available	723	Open in IMG/M
3300022503\|Ga0242650_1009984	Not Available	694	Open in IMG/M
3300022505\|Ga0242647_1004207	Not Available	1103	Open in IMG/M
3300022505\|Ga0242647_1014004	Not Available	749	Open in IMG/M
3300022505\|Ga0242647_1017732	Not Available	693	Open in IMG/M
3300022506\|Ga0242648_1023772	Not Available	805	Open in IMG/M
3300022506\|Ga0242648_1035181	Not Available	711	Open in IMG/M
3300022506\|Ga0242648_1075121	Not Available	556	Open in IMG/M
3300022506\|Ga0242648_1084329	Not Available	535	Open in IMG/M
3300022509\|Ga0242649_1019414	Not Available	800	Open in IMG/M
3300022510\|Ga0242652_1012361	Not Available	832	Open in IMG/M
3300022510\|Ga0242652_1013596	Not Available	806	Open in IMG/M
3300022511\|Ga0242651_1012422	Not Available	813	Open in IMG/M
3300022513\|Ga0242667_1012087	Not Available	804	Open in IMG/M
3300022513\|Ga0242667_1018088	Not Available	716	Open in IMG/M
3300022522\|Ga0242659_1138036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300022523\|Ga0242663_1037946	Not Available	806	Open in IMG/M
3300022523\|Ga0242663_1069654	Not Available	655	Open in IMG/M
3300022525\|Ga0242656_1037083	Not Available	803	Open in IMG/M
3300022527\|Ga0242664_1041391	Not Available	813	Open in IMG/M
3300022528\|Ga0242669_1034984	Not Available	803	Open in IMG/M
3300022529\|Ga0242668_1087700	Not Available	614	Open in IMG/M
3300022708\|Ga0242670_1048126	Not Available	600	Open in IMG/M
3300022711\|Ga0242674_1019023	Not Available	789	Open in IMG/M
3300022712\|Ga0242653_1098878	Not Available	532	Open in IMG/M
3300022714\|Ga0242671_1028806	Not Available	826	Open in IMG/M
3300022714\|Ga0242671_1033772	Not Available	786	Open in IMG/M
3300022715\|Ga0242678_1019591	Not Available	811	Open in IMG/M
3300022718\|Ga0242675_1055020	Not Available	676	Open in IMG/M
3300022726\|Ga0242654_10321837	Not Available	575	Open in IMG/M
3300023537\|Ga0247541_100932	Not Available	784	Open in IMG/M
3300023544\|Ga0247542_101988	Not Available	733	Open in IMG/M
3300023547\|Ga0247554_101529	Not Available	807	Open in IMG/M
3300029636\|Ga0222749_10415747	Not Available	715	Open in IMG/M
3300029701\|Ga0222748_1035854	Not Available	799	Open in IMG/M
3300030575\|Ga0210288_1219800	Not Available	543	Open in IMG/M
3300030578\|Ga0210275_10135337	Not Available	721	Open in IMG/M
3300030602\|Ga0210254_10411973	Not Available	592	Open in IMG/M
3300030602\|Ga0210254_11140304	Not Available	532	Open in IMG/M
3300030602\|Ga0210254_11318409	Not Available	659	Open in IMG/M
3300030623\|Ga0265392_1049040	Not Available	791	Open in IMG/M
3300030629\|Ga0210268_1178602	Not Available	663	Open in IMG/M
3300030631\|Ga0210279_10189525	Not Available	722	Open in IMG/M
3300030730\|Ga0307482_1090809	Not Available	820	Open in IMG/M
3300030738\|Ga0265462_11108182	Not Available	695	Open in IMG/M
3300030805\|Ga0265756_103757	Not Available	834	Open in IMG/M
3300030813\|Ga0265750_1026214	Not Available	778	Open in IMG/M
3300030832\|Ga0265752_105971	Not Available	593	Open in IMG/M
3300030862\|Ga0265753_1037790	Not Available	810	Open in IMG/M
3300030874\|Ga0265742_1008837	Not Available	749	Open in IMG/M
3300030877\|Ga0265777_106563	Not Available	796	Open in IMG/M
3300030877\|Ga0265777_106939	Not Available	780	Open in IMG/M
3300030879\|Ga0265765_1023652	Not Available	755	Open in IMG/M
3300030978\|Ga0265757_104077	Not Available	723	Open in IMG/M
3300031017\|Ga0265744_103199	Not Available	816	Open in IMG/M
3300031042\|Ga0265749_101086	Not Available	804	Open in IMG/M
3300031636\|Ga0310113_131448	Not Available	512	Open in IMG/M
3300031808\|Ga0316037_109994	Not Available	650	Open in IMG/M
3300031828\|Ga0316043_120976	Not Available	728	Open in IMG/M
3300032895\|Ga0335074_10817776	Not Available	865	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.08%
Aquatic	Environmental → Aquatic	7.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.08%
Freshwater	Environmental → Aquatic → Freshwater	7.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.94%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.73%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	11.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004100	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004115	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF216 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019157	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019165	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019170	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019181	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019183	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019186	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019192	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019194	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019211	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022500	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022503	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022511	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023537	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023544	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023547	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030575	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE050SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030602	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030623	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE043SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030629	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030631	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO086SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030832	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030877	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030978	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031017	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031042	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031636	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031808	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031828	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101882241	3300003505	Forest Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATARFVL
Ga0058904_14307821	3300004100	Forest Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTA
Ga0058890_1000821	3300004115	Forest Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILKTNNLNLSTA
Ga0138568_11974852	3300011080	Peatlands Soil	VNSASAIPPFGCFKRSRTFQPDPTFPRSPGIILETNNLNLSTATARFV
Ga0150983_100573031	3300011120	Forest Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATARFVL
Ga0150983_137270861	3300011120	Forest Soil	VNFASAALPFGRFKRSRVNQPNPTFPRSPGSILETNHLNLSTATVRF
Ga0150983_139924071	3300011120	Forest Soil	LARANAPEEPVNSASTTLPFGWFKRSRANQPDPTFARSPGIILETNNFNFSTATARFV
Ga0181507_14232482	3300016705	Peatland	VNFASAARPFGQFKRSQANQPNPTFPRSPGIILETFSFNL
Ga0181505_110522901	3300016750	Peatland	VNFASAIPPFGRFKRNRTHQPDPTFPRSPGIILETNNLNLSTATA
Ga0184573_1109181	3300019157	Soil	VNFASAVRPFSQFKRNWVNQPNPTFPRSPGIILETNNCNLSTTAVRF
Ga0184589_1052211	3300019165	Soil	VNFASTARPFGRFKRSRIRQPDPTFLRSPGIILETNNLNLSTATARF
Ga0184589_1332502	3300019165	Soil	VNFASAAGPFGQFKRSRANQPNPTFPRSPGIILETCDINLSIATARFVL
Ga0184570_1127721	3300019170	Soil	VNFASAVRPFSQFKRNWVNQPNPTFPRSPGIILETNNCNLSTTAVRFV
Ga0184594_1110842	3300019181	Soil	VNFASAVPPFGWFKRGQTHQPDPTFPRSPGIILETNNLNLSTA
Ga0184601_1318881	3300019183	Soil	VNFASAAGPFGQFKRSRANQPNPTFPRSPGIILET
Ga0184588_1361521	3300019186	Soil	VNFASAVPPFGWFKRGQTHQPDPTFPRSPGIILETNNLNLSTATAR
Ga0184600_1293531	3300019190	Soil	VNFASAVPPFGWFKRGQTHQPDPTFPRSPGIILETNNLNLSTATARFV
Ga0184603_1217301	3300019192	Soil	VNFASAVPPFGWFKRSRANQPNPTFPRSPGITLETSNLNLSTVTVRFV
Ga0184586_1449901	3300019194	Soil	VNFASTARPFGRFKRSRIRQPDPAFLRSPGIILETNNLNLSTATARF
Ga0187799_12045541	3300019211	Peatland	VNFASAARPFGRFKRSRIRQPDPAFPRSPGVILETNNLNLSTATARF
Ga0181502_15007972	3300019242	Peatland	VNFASAIPPFGRFKRNRTHQPDPTFPRSPGIILETNNLNLSTATAR
Ga0181508_12007941	3300019256	Peatland	VNFASAARPFGQFKRSQANQPNPTFPRSPGIILETNNLNLSTATVRFV
Ga0181508_15952251	3300019256	Peatland	VNFASAIPPFGRFKRNRTHQPDPTFPRSPGIILETNNLNLSTATARF
Ga0181512_12672951	3300019270	Peatland	VNFASAARPFGQFKRSQANQPNPTFPRSPGIILETNNLNLSTATVRF
Ga0187798_16735611	3300019275	Peatland	VNFASAAPPFGRFKRGRTHQPDPTFPRSPGIILETNNLNLSTATAR
Ga0187800_10317891	3300019278	Peatland	VNFASAAPPFGRFKRGRTHQPDPTFPRSPGIILETNNLNLSTATARFVL
Ga0187800_11367991	3300019278	Peatland	VNFASAVPPFGEFKRSRAHQPDPAFPRSPGIILETNNLNLSTATARFV
Ga0187800_11980121	3300019278	Peatland	VNFASAAKPFGSFKRGRTHQPDPAFPRSPGIILETNNLNLSTATARF
Ga0187800_14293501	3300019278	Peatland	VNFASAASPFGWFERSRTNQPDPTFPRSPGIILETNNLNLSTVTARFVL
Ga0187800_18160501	3300019278	Peatland	VNFASAASPFGWFERSRTNQPDSTFPRSPGIILETNNLNLSTATARFV
Ga0187797_11050031	3300019284	Peatland	VNFASAAPPFGRFKRGRTHQPDPTFPRSPGIILETNNLNLSTATARFV
Ga0187797_11914911	3300019284	Peatland	VNFASAAPPFGWFKRSRTHQPDPTFPRSPGIILKTNHLDLSTATARF
Ga0187797_14081832	3300019284	Peatland	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNCNLSTATVRF
Ga0187797_14920251	3300019284	Peatland	VNFASAAKPFGQFKRSRANQPNPTFPRSPGIILETNN
Ga0187797_15008961	3300019284	Peatland	VNFASAVQPFGWFKRSRANQPDPTFPRSPGIILETNHDNLSTTTARFV
Ga0213854_12475591	3300021855	Watersheds	VNFASAACLSACFWRSLVNQPNPAFPRSPGIILETNNLNLSTVTARFV
Ga0213851_14164012	3300021860	Watersheds	VNFASATRPFGWLKRSRVNQPDPTFARSPGIILETNNLNLSTATVRF
Ga0242641_10063771	3300022499	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATARFV
Ga0242643_1061371	3300022500	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILKTNNLNLSTATA
Ga0242643_1083031	3300022500	Soil	MPEELVNFASAVRPFGRFKRSQTNQPGPTFPRSPGITLETNNFNLSTATARFV
Ga0242646_10054991	3300022502	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATAC
Ga0242650_10087721	3300022503	Soil	VNFASAAQPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTA
Ga0242650_10099841	3300022503	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATAR
Ga0242647_10042071	3300022505	Soil	VNFASATRPFGWLKRSRVNQPDPTFARSPGIILETNNLNLSTATVRFV
Ga0242647_10140041	3300022505	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILKTNNLNLSTATARF
Ga0242647_10177321	3300022505	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATA
Ga0242648_10237721	3300022506	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATARFV
Ga0242648_10351811	3300022506	Soil	VNFASATRPFGWLKRSRVNQPDPTFARSPGIILETNNLNLSTATVR
Ga0242648_10751211	3300022506	Soil	VNFASATLPFGQFKRSRTNQPNPTFPRSPGIILETNNLNLSTATVRFV
Ga0242648_10843291	3300022506	Soil	VNFASAVRPFGQFKRSQANQPNPTFPRSPGIILETNNCNLSTATIR
Ga0242649_10194141	3300022509	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILKTNNLNLSTATAR
Ga0242652_10123611	3300022510	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATARF
Ga0242652_10135961	3300022510	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNLSTATARF
Ga0242651_10124221	3300022511	Soil	VNFASAVPPFGWFKRSRIHQPDPTFPRLPGIILETNNLNLSTAAARF
Ga0242667_10120871	3300022513	Soil	VNFASAAGPFGQFKRSRANQPNPTFPRSPGIILETCDINLSIATARFV
Ga0242667_10180881	3300022513	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILKTNNLNLSTATARFV
Ga0242659_11380362	3300022522	Soil	VNFASAAKPFGQFKRSRANQPNPTFPRSPGIILETNNLN
Ga0242663_10379461	3300022523	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATARSPEF
Ga0242663_10696541	3300022523	Soil	VNFASATRPFGWLKRSRVNQPDPTFARSPGIILETNNLNLSTATVRFVH
Ga0242656_10370831	3300022525	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLST
Ga0242664_10413911	3300022527	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNLSTATARFVL
Ga0242669_10349841	3300022528	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATAR
Ga0242668_10877001	3300022529	Soil	VNFASTTQPFGQFQRSRAYQPNPTFPRLPGIILETFNLNLSTSTVR
Ga0242670_10481261	3300022708	Soil	LARANAPEKPVDSASATLPFGWSKRSQANQPDLTFARSPGIILETNNLNLSTATA
Ga0242674_10190231	3300022711	Soil	VNFASAAGPFGQFKRSRANQPNPTFPRSPGIILETCDINLSIATA
Ga0242653_10988782	3300022712	Soil	VNFASAAQPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVR
Ga0242671_10288061	3300022714	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNLSTATARSELLAPALCG
Ga0242671_10337721	3300022714	Soil	VNFASAVPPFGWFKRSRIHQPDPTFPRLPGIILETNNLNLSTATARFVL
Ga0242678_10195911	3300022715	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTATARF
Ga0242675_10550201	3300022718	Soil	VNFASAAQPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVRFVLSMN
Ga0242654_103218371	3300022726	Soil	VNFASRPKPFGRFKRSRVNQPNPTFPRSPGIILETNHLNLSTATVR
Ga0247541_1009322	3300023537	Soil	VNFASAVRPFSQFKRNWVNQPNPTFPRSPGIILETNNCNLSTTAVRFVL
Ga0247542_1019881	3300023544	Soil	VNFASTARPFGRFKRSRIRQPDPAFLRSPGIILETNNLNLSTATARFV
Ga0247554_1015291	3300023547	Soil	VNFASAVPPFGWFKRGQTHQPDPTFPRSPGIILETNNLNLSTATARF
Ga0222749_104157471	3300029636	Soil	VNFASAAQPFGQFKRSRVNQPNPTFPRSPGIILETNNLNL
Ga0222748_10358541	3300029701	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNLSTATARFV
Ga0210288_12198002	3300030575	Soil	VNFASAARPFGQFKRSRTNQPNPTFPRSPGIILETFNLNFSTA
Ga0210275_101353371	3300030578	Soil	VNFASATGPFGQFKRSRAYQPNPTFPRLPGIILETFNLNLSTSTVRFV
Ga0210254_104119732	3300030602	Soil	VNFASAARPFGQFKRSRTNQPNPTFPLSPGIILETFNLNFSTATVR
Ga0210254_111403041	3300030602	Soil	VNSASAIPPFGWFKRSRIFQPDPTFPRSPGIILET
Ga0210254_113184091	3300030602	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNVNCYRS
Ga0265392_10490401	3300030623	Soil	VNFASADQSFDWLKRSRANQPNPTFPRLPGIIPETNNLNLSTV
Ga0210268_11786021	3300030629	Soil	VNFASAARPFGQFKRSRTNQPNPTFPRSPGIILETFSLNLSTATA
Ga0210279_101895251	3300030631	Soil	VNFASVAQPFGWFKRSRIRQPDPAFPRSPGIILETNNLNLSTAT
Ga0307482_10908091	3300030730	Hardwood Forest Soil	VKIASAAGPFGQFKRSRANQPNPTFPRSPGIILETCDINLSIATARF
Ga0265462_111081821	3300030738	Soil	VNFASAARPFGQFKRSRTNQPNPTFPRSPGIILETFNLNSSTATVR
Ga0265756_1037571	3300030805	Soil	VNFASAVPPFGWFKRSRIHQPDPTFPRLPGIILETNNLNLSTATARFV
Ga0265750_10262141	3300030813	Soil	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVRFVL
Ga0265752_1059711	3300030832	Soil	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNLNL
Ga0265753_10377901	3300030862	Soil	VNFASTARLSAGFKRSWAHQPDPTFPRLPGIILETNNLNLSTATAR
Ga0265742_10088371	3300030874	Soil	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVR
Ga0265777_1065631	3300030877	Soil	VNFASTAQPFGRFKRSRIRQPDPTFLRSPGIILETNNLNLSTATARF
Ga0265777_1069391	3300030877	Soil	VNFASAARPFGQFKRSRANQPNPTFPRLPGIILETNNLNLSTATVRF
Ga0265765_10236521	3300030879	Soil	VNFASAARPFGQFKRSRANQPNPTFPRSPGIILETNNLNLSTATVRF
Ga0265757_1040771	3300030978	Soil	VNFASTAQPFGRFKRSRIRQPDPTFLRSPGIILETNNLNLSTATARFV
Ga0265744_1031991	3300031017	Soil	VNFASAARPFGQFKRSRANQPNPTFPRLPGIILETNNLNLSTATVRFV
Ga0265749_1010861	3300031042	Soil	VNFASATRPFGQFKRSRAYQPNPTFPRLPGIILETFNLNLSTSTV
Ga0310113_1314481	3300031636	Soil	VNFASTAQPFGRFKRSRIRQPDPTFLRSPGIILETNNLNLSTATARFVL
Ga0316037_1099941	3300031808	Soil	VNFASAACLSACFWRSLVNQPDPAFPRSPGIILETNNLNLSTATAR
Ga0316043_1209761	3300031828	Soil	VNFASAACLSACFWRSLVNQPDPAFPRSPGIILETNNLNLSTATARF
Ga0335074_108177761	3300032895	Soil	VNFASAASPFGWFKRSRTNQPDSTFPRSPGIILETNNLNLSTATARFVLSMNCQHHNNFF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences