NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102153

Metagenome Family F102153

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102153
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 42 residues
Representative Sequence MSDSEDLELQALQRQLDDAFETTRPRVGFEDELWTRMQARRP
Number of Associated Samples 92
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 94.12 %
% of genes from short scaffolds (< 2000 bps) 83.33 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.059 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(22.549 % of family members)
Environment Ontology (ENVO) Unclassified
(31.373 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.706 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.86%    β-sheet: 0.00%    Coil/Unstructured: 57.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF08281Sigma70_r4_2 71.57
PF03009GDPD 19.61
PF04545Sigma70_r4 6.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0584Glycerophosphoryl diester phosphodiesteraseLipid transport and metabolism [I] 19.61

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.06 %
UnclassifiedrootN/A2.94 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090004|P1_DRAFT_NODE_299531_len_796_cov_10_604271All Organisms → cellular organisms → Bacteria846Open in IMG/M
2140918006|ConsensusfromContig100242All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10026145All Organisms → cellular organisms → Bacteria1588Open in IMG/M
3300000887|AL16A1W_10435517All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300001334|A2165W6_1071283All Organisms → cellular organisms → Bacteria1662Open in IMG/M
3300001361|A30PFW6_1069550All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300001397|JGI20177J14857_1037700All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300001535|A3PFW1_10069177All Organisms → cellular organisms → Bacteria2188Open in IMG/M
3300001536|A1565W1_11780943All Organisms → cellular organisms → Bacteria2617Open in IMG/M
3300001537|A2065W1_10208341All Organisms → cellular organisms → Bacteria866Open in IMG/M
3300001593|JGI12635J15846_10383053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium853Open in IMG/M
3300001661|JGI12053J15887_10204477All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300002917|JGI25616J43925_10371718All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300005171|Ga0066677_10702065All Organisms → cellular organisms → Bacteria → Terrabacteria group566Open in IMG/M
3300005174|Ga0066680_10012117All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi4473Open in IMG/M
3300005406|Ga0070703_10518871All Organisms → cellular organisms → Bacteria → Terrabacteria group539Open in IMG/M
3300005451|Ga0066681_10041057All Organisms → cellular organisms → Bacteria2489Open in IMG/M
3300005471|Ga0070698_100993117All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300005471|Ga0070698_101548994All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005537|Ga0070730_10917291All Organisms → cellular organisms → Bacteria → Terrabacteria group548Open in IMG/M
3300005545|Ga0070695_101081503All Organisms → cellular organisms → Bacteria → Terrabacteria group655Open in IMG/M
3300005554|Ga0066661_10561540All Organisms → cellular organisms → Bacteria → Terrabacteria group682Open in IMG/M
3300005555|Ga0066692_10925991All Organisms → cellular organisms → Bacteria → Terrabacteria group534Open in IMG/M
3300005557|Ga0066704_10040608All Organisms → cellular organisms → Bacteria2895Open in IMG/M
3300005560|Ga0066670_10572710All Organisms → cellular organisms → Bacteria → Terrabacteria group689Open in IMG/M
3300005569|Ga0066705_10358237All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300005587|Ga0066654_10033677All Organisms → cellular organisms → Bacteria2157Open in IMG/M
3300005598|Ga0066706_10939035All Organisms → cellular organisms → Bacteria → Terrabacteria group671Open in IMG/M
3300005947|Ga0066794_10051537All Organisms → cellular organisms → Bacteria1219Open in IMG/M
3300006032|Ga0066696_10503119All Organisms → cellular organisms → Bacteria → Terrabacteria group795Open in IMG/M
3300006041|Ga0075023_100448355All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300006046|Ga0066652_100666408All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300006058|Ga0075432_10173596All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300006162|Ga0075030_100506429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria960Open in IMG/M
3300006800|Ga0066660_11591515All Organisms → cellular organisms → Bacteria → Terrabacteria group517Open in IMG/M
3300007258|Ga0099793_10213441All Organisms → cellular organisms → Bacteria → Terrabacteria group927Open in IMG/M
3300007265|Ga0099794_10143757All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300009088|Ga0099830_10888913All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300009143|Ga0099792_10892654All Organisms → cellular organisms → Bacteria → Terrabacteria group588Open in IMG/M
3300010321|Ga0134067_10284428All Organisms → cellular organisms → Bacteria → Terrabacteria group633Open in IMG/M
3300010337|Ga0134062_10697666All Organisms → cellular organisms → Bacteria → Terrabacteria group533Open in IMG/M
3300010337|Ga0134062_10702605All Organisms → cellular organisms → Bacteria → Terrabacteria group531Open in IMG/M
3300012096|Ga0137389_10443725All Organisms → cellular organisms → Bacteria → Terrabacteria group1111Open in IMG/M
3300012096|Ga0137389_11802739All Organisms → cellular organisms → Bacteria → Terrabacteria group508Open in IMG/M
3300012200|Ga0137382_10088460All Organisms → cellular organisms → Bacteria2022Open in IMG/M
3300012201|Ga0137365_10061914All Organisms → cellular organisms → Bacteria2826Open in IMG/M
3300012206|Ga0137380_10163457All Organisms → cellular organisms → Bacteria2029Open in IMG/M
3300012207|Ga0137381_10430693All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300012208|Ga0137376_10064971All Organisms → cellular organisms → Bacteria3021Open in IMG/M
3300012208|Ga0137376_10995738All Organisms → cellular organisms → Bacteria → Terrabacteria group718Open in IMG/M
3300012211|Ga0137377_10928690All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300012350|Ga0137372_10150424All Organisms → cellular organisms → Bacteria1902Open in IMG/M
3300012363|Ga0137390_10613323All Organisms → cellular organisms → Bacteria1055Open in IMG/M
3300012922|Ga0137394_10301516All Organisms → cellular organisms → Bacteria1369Open in IMG/M
3300012927|Ga0137416_10299773All Organisms → cellular organisms → Bacteria1332Open in IMG/M
3300012927|Ga0137416_10504496All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300012944|Ga0137410_10090514All Organisms → cellular organisms → Bacteria2252Open in IMG/M
3300013763|Ga0120179_1007345All Organisms → cellular organisms → Bacteria2982Open in IMG/M
3300014150|Ga0134081_10194416All Organisms → cellular organisms → Bacteria → Terrabacteria group686Open in IMG/M
3300014157|Ga0134078_10151575All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium912Open in IMG/M
3300015357|Ga0134072_10432526All Organisms → cellular organisms → Bacteria → Terrabacteria group526Open in IMG/M
3300017659|Ga0134083_10080412All Organisms → cellular organisms → Bacteria1265Open in IMG/M
3300020581|Ga0210399_10809510All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300020581|Ga0210399_10902444All Organisms → cellular organisms → Bacteria → Terrabacteria group716Open in IMG/M
3300021046|Ga0215015_10227986All Organisms → cellular organisms → Bacteria829Open in IMG/M
3300021178|Ga0210408_10528643All Organisms → cellular organisms → Bacteria → Terrabacteria group937Open in IMG/M
3300021432|Ga0210384_10318800All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300021432|Ga0210384_10691879All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300021439|Ga0213879_10251117All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300022691|Ga0248483_109045All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300025862|Ga0209483_1238295All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300025928|Ga0207700_11726352All Organisms → cellular organisms → Bacteria → Terrabacteria group552Open in IMG/M
3300026309|Ga0209055_1219217All Organisms → cellular organisms → Bacteria → Terrabacteria group583Open in IMG/M
3300026312|Ga0209153_1016723All Organisms → cellular organisms → Bacteria → Terrabacteria group2381Open in IMG/M
3300026317|Ga0209154_1280416All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300026323|Ga0209472_1140721All Organisms → cellular organisms → Bacteria → Terrabacteria group920Open in IMG/M
3300026325|Ga0209152_10076579All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300026325|Ga0209152_10198310All Organisms → cellular organisms → Bacteria → Terrabacteria group754Open in IMG/M
3300026358|Ga0257166_1006742All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300026499|Ga0257181_1035990All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300026499|Ga0257181_1042377All Organisms → cellular organisms → Bacteria → Terrabacteria group742Open in IMG/M
3300026524|Ga0209690_1287365All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300026547|Ga0209156_10285869All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300026550|Ga0209474_10154476All Organisms → cellular organisms → Bacteria1492Open in IMG/M
3300026552|Ga0209577_10116595All Organisms → cellular organisms → Bacteria2144Open in IMG/M
3300027587|Ga0209220_1030611All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300027587|Ga0209220_1154181All Organisms → cellular organisms → Bacteria → Terrabacteria group593Open in IMG/M
3300027603|Ga0209331_1070894All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300027633|Ga0208988_1072630All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300027669|Ga0208981_1095863All Organisms → cellular organisms → Bacteria → Terrabacteria group757Open in IMG/M
3300027674|Ga0209118_1116637All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae747Open in IMG/M
3300027842|Ga0209580_10169674All Organisms → cellular organisms → Bacteria → Terrabacteria group1077Open in IMG/M
3300027862|Ga0209701_10131842All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales1539Open in IMG/M
3300031747|Ga0318502_10899290All Organisms → cellular organisms → Bacteria → Terrabacteria group538Open in IMG/M
3300031754|Ga0307475_10230650All Organisms → cellular organisms → Bacteria1483Open in IMG/M
3300031880|Ga0318544_10196765All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium778Open in IMG/M
3300031962|Ga0307479_10767202All Organisms → cellular organisms → Bacteria → Terrabacteria group941Open in IMG/M
3300032180|Ga0307471_103492482All Organisms → cellular organisms → Bacteria → Terrabacteria group556Open in IMG/M
3300032205|Ga0307472_102720353All Organisms → cellular organisms → Bacteria → Terrabacteria group505Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil22.55%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.78%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.84%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.86%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost6.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.92%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.96%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil1.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.98%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090004Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1EnvironmentalOpen in IMG/M
2140918006Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000887Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001334Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001361Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illuminaEnvironmentalOpen in IMG/M
3300001397Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012EnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005947Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013763Permafrost microbial communities from Nunavut, Canada - A15_65cm_0MEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021439Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03EnvironmentalOpen in IMG/M
3300022691Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depthEnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027633Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027669Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P1_DRAFT_008191902088090004SoilMIEDEDLELLALQRRLDDAFQTTRPRRDFEDELWLRMQS
P1_C_003393702140918006SoilVSEPEDLELEALQRQLDDAFETTRPRAGFEDELWTRMQARRP
AF_2010_repII_A1DRAFT_1002614543300000597Forest SoilMSDENEDVELQALQRQLDDAFATTRPRRGYEDELWVRVQQSR
AL16A1W_1043551723300000887PermafrostMSEDEDLELQALQRLLDDAFQATRPRPAFEDELWLRMQSRRPI
A2165W6_107128313300001334PermafrostMSEEEDLELKALQRQLDDAFQTTRPRPAFEDELWLRMQSR
A30PFW6_106955023300001361PermafrostMSEEEDLELKALQRQLDDAFQTTRPRPAFEDELWLRMQSRRP
JGI20177J14857_103770023300001397Arctic Peat SoilMSEDEDLELQALQRQLDDAFQTTRPRADFEDELWLRMQSRRPI
A3PFW1_1006917743300001535PermafrostVSEPEDLELEALQRQLDDAFDTTRPRAGFEDELWTRMQA
A1565W1_1178094313300001536PermafrostMSEHEDDLELAALQRQLDDAFETTRPRAGFEDELWSRMQARRP
A2065W1_1020834123300001537PermafrostMSDEEELNLQALQRQLDDAFQTTRPRPAFEDELWLRMQA
JGI12635J15846_1038305313300001593Forest SoilMSEDEDLDLLALQRQLDDAFQTTRPRPAFEDELWLRLQSRRPFWQRF
JGI12053J15887_1020447733300001661Forest SoilVSEPEDLELEALQRQLDDAFDTTRPRVGFEDELWTRMQASR
JGI25390J43892_1011306223300002911Grasslands SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQGSRPAGSRLGDA
JGI25616J43925_1037171813300002917Grasslands SoilVSEQEEELELQAMQRELDDAFATTRPRAGYEDELWLRMQAQRPAPNKI
Ga0066677_1070206513300005171SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNRLR
Ga0066680_1001211713300005174SoilMNEDEDLELQALQRRLDDAFQTTRPRAGFEDELWSRMQARRPVWL
Ga0070703_1051887123300005406Corn, Switchgrass And Miscanthus RhizosphereMSERDEDDLELQALQRELDDAFATTRPRRGYEDELWLLIQ
Ga0066681_1004105713300005451SoilVSEQDDELELQALQRELDDAFATTRPRAGFDDELWLRMQSKRPL
Ga0066687_1066746023300005454SoilMSDSDDELDLQALQRKLDDAFETTRPRPGFDDELWLRMQSSRPVTSRLRDALAGFV
Ga0070698_10099311723300005471Corn, Switchgrass And Miscanthus RhizosphereVKGDEDLELQALQRQLDDAFETTRPRAGFEDALWSRMQAR
Ga0070698_10154899423300005471Corn, Switchgrass And Miscanthus RhizosphereVNDDEDLELQALQRQLDDAFETTRPRAGFEDALWSRMQARRPLWRR
Ga0070730_1091729113300005537Surface SoilVSENGEDLDLQALERKLDEAFATTRPRAGFEDELWLR
Ga0070695_10108150323300005545Corn, Switchgrass And Miscanthus RhizosphereVSEPDDDLELQALQRELDDAFATTRPRAGFDDELWLRMQA
Ga0066661_1056154023300005554SoilVSEQDEDLELQALQRELDDAFATTRPRVGFDDELWLRMQAKRPFSTRV
Ga0066692_1092599113300005555SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWL
Ga0066704_1004060843300005557SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSR
Ga0066670_1057271023300005560SoilVNENDEDLELAALQRRLDDAFETTRPRPGFDDELWLRMQSSRPASSR
Ga0066705_1035823733300005569SoilVNENDEDIELAALQRRLDDAFETTRPRPGFDDELWLRMQSSRPASSRLRD
Ga0066654_1003367743300005587SoilLSDDKDDLELAALQRQLDDAFETTRPRRGYEDELWLKLQARRP
Ga0066706_1093903513300005598SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELWLRMQARRPLST
Ga0066794_1005153713300005947SoilMSEEEDLDLLALQRQLDDAFQTTRPRPAFEDELWLRMQSRRPIWS
Ga0066696_1050311933300006032SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELW
Ga0075023_10044835523300006041WatershedsMSERDNELEALQRQLDDAFMTTRPRRGFEDELWQRMQER
Ga0066652_10066640813300006046SoilMSEHDEDLELQALQRQLDDAFQTTRPRRGFEDDLWLRMQASRPAT
Ga0075432_1017359633300006058Populus RhizosphereMSDRDDDLELQALQRELDDAFATTRPRRDFEDELWVRMQ
Ga0075030_10050642913300006162WatershedsMSEQDDDLELQALQRQLDDAFESTRPRRGFEDQLWLRMQERRPLWSRI
Ga0066660_1159151513300006800SoilMNENDEDLELAALQRQLDDAFETTRPRPGFDDELWLRVQSSRA
Ga0099793_1021344113300007258Vadose Zone SoilVSEQEEDLELQALQRQLDDAFETTRPRLGFDDELWLRMQSSRPARSRLRD
Ga0099794_1014375733300007265Vadose Zone SoilMSDDEDRELQALQRQLDDAFETTRPRAGFEEDLWSRMQARRPIWVRAL
Ga0099830_1088891313300009088Vadose Zone SoilVSDSEDLELQALQRQLDDAFETTRPRPGFEDELWTRIQ
Ga0099792_1089265413300009143Vadose Zone SoilMSDDEDRELQALQRQLDDAFETTRPRAGFEDDLWSKMQARRP
Ga0134067_1028442813300010321Grasslands SoilVSKQDDELELQALQRELDDAFATTRPRVGFDDELWLRM
Ga0134062_1069766623300010337Grasslands SoilVSEKDEDLELQALQRELDDAFATTRPRVGFDDALW
Ga0134062_1070260523300010337Grasslands SoilMSELDDDLEVQALQRELDDAFATTRPRRGYEDELWLLIQQQRPV
Ga0137389_1044372513300012096Vadose Zone SoilVSEQEEDLELQALQRQLDDAFETTRPRSGFDDELWLRM
Ga0137389_1180273923300012096Vadose Zone SoilMSDDEDLELQALQRKLDDAFETTRPRAGFEDALWSRMQ
Ga0137382_1008846013300012200Vadose Zone SoilVSEQDDELELQALQRELDDAFATTRPRAGFDDELWLRMQT
Ga0137365_1006191413300012201Vadose Zone SoilLSDNKDDLELQALQRELDDAFATTRPRRDFEDELWLRMQARRPLWTR
Ga0137380_1016345713300012206Vadose Zone SoilLSDDKEDLELQALQRELDDAFATTRPRRGYEDELWLRMQAR
Ga0137381_1043069313300012207Vadose Zone SoilLNDDEELELAALQRKLDDAFQTTRPRANFEDELWLRM
Ga0137376_1006497113300012208Vadose Zone SoilMSEDEDLDLQALQRQLDDAFQTTRPRPAFEDELWLRMQTRRPIWLRLREG
Ga0137376_1099573823300012208Vadose Zone SoilMSEPDDELELQALQRQLDDAFETTRPRTGFDDELWLRMQSSRPARSRLRD
Ga0137377_1092869013300012211Vadose Zone SoilMNDDEDLELQALQRQLDDAFQTTRPRAGFGDHLWAELQVRRPLLQR
Ga0137372_1015042443300012350Vadose Zone SoilVSEPPEEIDDLELQALQRELDGAFESTRPRPGFEDELWLQVQSA
Ga0137390_1061332333300012363Vadose Zone SoilMNEDEDLELQALQRRLDDAFQTTRPRAAFEDELWSKM
Ga0137397_1116667313300012685Vadose Zone SoilVSDPDEELELQALQRQLDDAFETTRPRTEFDDELWLRMQSSRPARSRLRDAISGLFQ
Ga0137394_1030151633300012922Vadose Zone SoilMSDSEDLELQALQRQLDDAFETTRPRPGFEDELWTRIQA
Ga0137416_1029977333300012927Vadose Zone SoilVSEQEEDLELQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPARSR
Ga0137416_1050449613300012927Vadose Zone SoilMSNSEDLEFQAIQRQLDDAFETTRPRAGFEDELWTRIQARRP
Ga0137410_1009051443300012944Vadose Zone SoilVSEDEDLELQALQRQLDDAFQTTRPRPSFEDELWLRMQARRPIWTRFREGL
Ga0120179_100734543300013763PermafrostMSEHEDDLELAALQRQLDDAFETTRPRAGFEDELWA
Ga0134081_1019441623300014150Grasslands SoilMSEPDGDLELQGLQRELDDAFQTTRPRPAFEDELWLKMQTSRPPARR*
Ga0134078_1015157533300014157Grasslands SoilLSDDKEDLELAALQRELDDAFATTRPRRGFEDDLWL
Ga0134072_1043252613300015357Grasslands SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPAKS
Ga0134083_1008041233300017659Grasslands SoilMSERDDDLELQALQRELDDAFATTRPRRDFEDELWLRMQAARPA
Ga0210399_1080951013300020581SoilVNEEEDLELLALQRQLDDAFQTTRPRANFEDELWSRMQSRRPIWPRLR
Ga0210399_1090244413300020581SoilVSEEPEDLELAALQRQLDDAFETTRPRAGFEDELWTRM
Ga0215015_1022798623300021046SoilMSDDENLDLQALQRQLDDAFETTRPRAAFELSLIHI
Ga0210408_1052864333300021178SoilMSENDEDLELAAMQRQLDDAFATTRPRQGFEDELWLRVQSSRPAP
Ga0210384_1031880013300021432SoilMSDNEDRELQALQRQLDDAFQTTRPRAAFEDDLWSRMQERRPVWQRVRDF
Ga0210384_1069187933300021432SoilVSEPEEELELQALQRKLDDAFETTRPRPGFDDELW
Ga0213879_1025111713300021439Bulk SoilLSKDPEELELEALQRRLDDAFETTRPRRGFEDELWLRMQRKRPFG
Ga0248483_10904513300022691SoilMNDDEDLELQALQRRLDDAFQTTRPRAGFEDELWSRMQARRPV
Ga0209483_123829523300025862Arctic Peat SoilMSEEEDLELQALQRQLDDAFQTTRPRADFEDELWLRMQSRRPIWLR
Ga0207700_1172635213300025928Corn, Switchgrass And Miscanthus RhizosphereVSEPDDLELEALQRQLDDAFETTRPRAGFEDELWTRMQARR
Ga0209055_121921713300026309SoilMSDPDEELELQALQRQLDDAFETTRPRTGFEDELWLRMQSSRAAPSRLRD
Ga0209153_101672343300026312SoilMSEPEEDLELQALQRQLDDAFETTRPRRGFEDELWVRMQASRPATNR
Ga0209154_128041623300026317SoilMSDEEDLELQALQRQLDDAFQTTRPRAGFEDHLWAELQV
Ga0209472_114072113300026323SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQSSRPAKSR
Ga0209152_1007657913300026325SoilVSEQEEELEVQALQRQLDDAFETTRPRPGFDDELWLRMQ
Ga0209152_1019831013300026325SoilLSEPEEELELQALQRQLDDAMETTRPRPDFEDELWL
Ga0257166_100674213300026358SoilMNEDEDLELQALQRRLDDAFQTTRPRAAFEDELWSKMQ
Ga0257181_103599013300026499SoilMNEDEDLELQALQRRLDDAFQTTRPRAGFEDELWSRMQARR
Ga0257181_104237713300026499SoilVSEPDDDLELEALKRQLDDAFQTTRPRPDFEDELWTRMQARRPAGT
Ga0209690_128736513300026524SoilMNEDEDLELQALQRRLDDAFQTTRPRAGFEDELWSRMQARRPVWPQV
Ga0209156_1028586913300026547SoilLSDDKDDLELAALQRQLDDAFETTRPRRGYEDELWLQLQARRP
Ga0209474_1015447633300026550SoilVNENDEDLELAALQRQLDDAFETTRPRPGFDDELWLRMQSSRP
Ga0209577_1011659543300026552SoilMSDKEEDLELQALQRQLDDAFETTRPRTGFEDELWLR
Ga0209220_103061133300027587Forest SoilVSDEPEDLEVAALQRQLDDAFETTRPRAGFEDELWTR
Ga0209220_115418113300027587Forest SoilMSDQEDELELAALQRQLDDAFETTRPRIGFEDELWTRMQAR
Ga0209331_107089413300027603Forest SoilVSDSEDLELEALQRQLDDAFETTRPRRGFEDELWTRMQ
Ga0208988_107263013300027633Forest SoilMSDSEDLELQALQRQLDDAFETTRPRVGFEDELWTRMQARRP
Ga0208981_109586323300027669Forest SoilVSEPEDLELEALQRQLDDAFDTTRPRAGFEDELWTRMQARRP
Ga0209118_111663723300027674Forest SoilMSDEEDIDLLALQRQLDDAFETTRPRRGFDDELWLRLQSRRPIWRRC
Ga0209580_1016967433300027842Surface SoilVSQDNEELELQALERQLEDAFQTTRPRPDFEDELWLRLQS
Ga0209701_1013184213300027862Vadose Zone SoilVNEPEDLELEALKRQLDDAFQTTRPRPDFEDELWTRMQAR
Ga0318502_1089929013300031747SoilMSDHEDELELQALERQLDDAFETTRPRPAFSDELW
Ga0307475_1023065013300031754Hardwood Forest SoilMDDLELAALQRQLDDAFETTRPRRGYEDELWLKLQAR
Ga0318544_1019676533300031880SoilMSQNGEELELQALERQLDDAFETTRPRAGFEDELWLRMKSS
Ga0307479_1076720233300031962Hardwood Forest SoilMNDDGDELELAALQRQLDDAFETTRPRAGFDDELWL
Ga0307471_10349248213300032180Hardwood Forest SoilMSDDGDELELAALQRQLDDAFETTRPRSGFDDELWLRVQGS
Ga0307472_10272035313300032205Hardwood Forest SoilMSERDDDDLELQALQRQLDDAFATTRPRRGYEDEV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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