Metagenome / Metatranscriptome Family F101997

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101997
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	81 residues
Representative Sequence	MADDSNNVKPRPRRGPAWAYVLGGALGLPFAVAFVLGMLHLHSTDPGVPPPGTLALFGVLLGGKAYLIFSKPLPPRSKRP
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	41.18 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.902 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.314 % of family members)
Environment Ontology (ENVO)	Unclassified (45.098 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.137 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02599	CsrA	21.57
PF01794	Ferric_reduct	15.69
PF00248	Aldo_ket_red	10.78
PF00892	EamA	3.92
PF00593	TonB_dep_Rec	2.94
PF02371	Transposase_20	1.96
PF00174	Oxidored_molyb	1.96
PF05569	Peptidase_M56	0.98
PF03729	DUF308	0.98
PF00230	MIP	0.98
PF10604	Polyketide_cyc2	0.98
PF08327	AHSA1	0.98
PF03168	LEA_2	0.98
PF12146	Hydrolase_4	0.98
PF05598	DUF772	0.98
PF12833	HTH_18	0.98
PF00480	ROK	0.98
PF00355	Rieske	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	21.57
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.96
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	1.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.96
COG3915	Uncharacterized conserved protein	Function unknown [S]	1.96
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.98
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
All Organisms	root	All Organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
cellular organisms	root	All Organisms → cellular organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	5.88 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	2.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.98 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.88 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	2.94 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.88 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	2.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.88 %
Caulobacter mirabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter mirabilis	2.94 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5.88 %
Caulobacter mirabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter mirabilis	2.94 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101345820	Not Available	816	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101434500	Not Available	1170	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1032232	Not Available	674	Open in IMG/M
3300000955\|JGI1027J12803_100762555	All Organisms → cellular organisms → Bacteria → Proteobacteria	4510	Open in IMG/M
3300004479\|Ga0062595_100747049	Not Available	795	Open in IMG/M
3300004633\|Ga0066395_10465931	Not Available	723	Open in IMG/M
3300005335\|Ga0070666_10660098	Not Available	765	Open in IMG/M
3300005434\|Ga0070709_10002794	All Organisms → cellular organisms → Bacteria → Proteobacteria	9426	Open in IMG/M
3300005434\|Ga0070709_11570217	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005436\|Ga0070713_100003804	All Organisms → cellular organisms → Bacteria → Proteobacteria	9989	Open in IMG/M
3300005437\|Ga0070710_11510525	Not Available	505	Open in IMG/M
3300005439\|Ga0070711_100309412	Not Available	1259	Open in IMG/M
3300005545\|Ga0070695_100475240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	962	Open in IMG/M
3300005617\|Ga0068859_102118081	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005764\|Ga0066903_102013221	Not Available	1110	Open in IMG/M
3300006163\|Ga0070715_10015946	All Organisms → cellular organisms → Bacteria → Proteobacteria	2812	Open in IMG/M
3300006173\|Ga0070716_100156988	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300006755\|Ga0079222_10977931	Not Available	724	Open in IMG/M
3300006854\|Ga0075425_100175481	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300006903\|Ga0075426_11293979	Not Available	553	Open in IMG/M
3300006931\|Ga0097620_102117409	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300006954\|Ga0079219_12288217	Not Available	522	Open in IMG/M
3300009792\|Ga0126374_10743550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	743	Open in IMG/M
3300010360\|Ga0126372_10026721	All Organisms → cellular organisms → Bacteria	3534	Open in IMG/M
3300010396\|Ga0134126_10824867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter mirabilis	1047	Open in IMG/M
3300010398\|Ga0126383_11408678	Not Available	787	Open in IMG/M
3300012944\|Ga0137410_10621664	Not Available	894	Open in IMG/M
3300015371\|Ga0132258_10113986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6408	Open in IMG/M
3300015374\|Ga0132255_101031583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1235	Open in IMG/M
3300015374\|Ga0132255_101861884	Not Available	915	Open in IMG/M
3300016319\|Ga0182033_11404486	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300016341\|Ga0182035_11534094	Not Available	600	Open in IMG/M
3300016357\|Ga0182032_11578618	Not Available	571	Open in IMG/M
3300016387\|Ga0182040_10125402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1789	Open in IMG/M
3300016422\|Ga0182039_10986998	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300016445\|Ga0182038_10164829	Not Available	1708	Open in IMG/M
3300016445\|Ga0182038_11348768	Not Available	638	Open in IMG/M
3300017927\|Ga0187824_10327275	Not Available	548	Open in IMG/M
3300017947\|Ga0187785_10051653	Not Available	1543	Open in IMG/M
3300017961\|Ga0187778_10000387	All Organisms → cellular organisms → Bacteria → Proteobacteria	31335	Open in IMG/M
3300017966\|Ga0187776_10078561	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300017994\|Ga0187822_10041318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter mirabilis	1268	Open in IMG/M
3300018064\|Ga0187773_10602111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	672	Open in IMG/M
3300020579\|Ga0210407_10105643	All Organisms → cellular organisms → Bacteria → Proteobacteria	2143	Open in IMG/M
3300020580\|Ga0210403_10646310	Not Available	851	Open in IMG/M
3300021168\|Ga0210406_10089575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2624	Open in IMG/M
3300021432\|Ga0210384_10633014	Not Available	959	Open in IMG/M
3300022726\|Ga0242654_10199578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	695	Open in IMG/M
3300024222\|Ga0247691_1055599	Not Available	597	Open in IMG/M
3300024254\|Ga0247661_1096285	Not Available	559	Open in IMG/M
3300024283\|Ga0247670_1018225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1257	Open in IMG/M
3300025906\|Ga0207699_10010363	All Organisms → cellular organisms → Bacteria → Proteobacteria	4676	Open in IMG/M
3300026078\|Ga0207702_11748285	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300031231\|Ga0170824_113127245	Not Available	558	Open in IMG/M
3300031543\|Ga0318516_10073973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1893	Open in IMG/M
3300031544\|Ga0318534_10585301	Not Available	635	Open in IMG/M
3300031545\|Ga0318541_10209632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300031545\|Ga0318541_10239246	Not Available	1008	Open in IMG/M
3300031546\|Ga0318538_10231673	Not Available	990	Open in IMG/M
3300031546\|Ga0318538_10758945	Not Available	526	Open in IMG/M
3300031564\|Ga0318573_10383157	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031668\|Ga0318542_10033208	All Organisms → cellular organisms → Bacteria	2240	Open in IMG/M
3300031682\|Ga0318560_10236553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	979	Open in IMG/M
3300031715\|Ga0307476_10550614	Not Available	855	Open in IMG/M
3300031719\|Ga0306917_10130943	Not Available	1840	Open in IMG/M
3300031720\|Ga0307469_10027438	All Organisms → cellular organisms → Bacteria → Proteobacteria	3235	Open in IMG/M
3300031720\|Ga0307469_12000957	Not Available	562	Open in IMG/M
3300031723\|Ga0318493_10152190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M
3300031744\|Ga0306918_10671091	Not Available	811	Open in IMG/M
3300031744\|Ga0306918_11547835	Not Available	506	Open in IMG/M
3300031747\|Ga0318502_10097160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1628	Open in IMG/M
3300031768\|Ga0318509_10706608	Not Available	559	Open in IMG/M
3300031771\|Ga0318546_10351219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1026	Open in IMG/M
3300031793\|Ga0318548_10095907	Not Available	1415	Open in IMG/M
3300031797\|Ga0318550_10661766	Not Available	501	Open in IMG/M
3300031805\|Ga0318497_10546779	Not Available	649	Open in IMG/M
3300031823\|Ga0307478_10673350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300031859\|Ga0318527_10441867	Not Available	554	Open in IMG/M
3300031879\|Ga0306919_11079186	Not Available	612	Open in IMG/M
3300031880\|Ga0318544_10068031	Not Available	1311	Open in IMG/M
3300031890\|Ga0306925_10665970	Not Available	1093	Open in IMG/M
3300031893\|Ga0318536_10458303	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300031897\|Ga0318520_10449639	Not Available	792	Open in IMG/M
3300031910\|Ga0306923_10354396	Not Available	1673	Open in IMG/M
3300031912\|Ga0306921_10039982	All Organisms → cellular organisms → Bacteria	5290	Open in IMG/M
3300031912\|Ga0306921_10283538	Not Available	1940	Open in IMG/M
3300031912\|Ga0306921_10703676	Not Available	1161	Open in IMG/M
3300031912\|Ga0306921_12388632	Not Available	552	Open in IMG/M
3300031942\|Ga0310916_11425844	Not Available	567	Open in IMG/M
3300031947\|Ga0310909_11177749	Not Available	620	Open in IMG/M
3300031959\|Ga0318530_10248861	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300031962\|Ga0307479_11690534	Not Available	587	Open in IMG/M
3300032001\|Ga0306922_10308068	Not Available	1701	Open in IMG/M
3300032008\|Ga0318562_10240139	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300032055\|Ga0318575_10563119	Not Available	578	Open in IMG/M
3300032066\|Ga0318514_10123404	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300032067\|Ga0318524_10796267	Not Available	500	Open in IMG/M
3300032076\|Ga0306924_10663050	Not Available	1175	Open in IMG/M
3300032205\|Ga0307472_100432901	Not Available	1112	Open in IMG/M
3300032828\|Ga0335080_10199057	All Organisms → cellular organisms → Bacteria → Proteobacteria	2204	Open in IMG/M
3300033158\|Ga0335077_10072438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → Caulobacter mirabilis	4112	Open in IMG/M
3300033158\|Ga0335077_10245186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1988	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.18%
Host-Associated	Host-Associated	8.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.22%
Plants	Host-Associated → Plants	8.82%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Freshwater	Environmental → Aquatic → Freshwater	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.57%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1013458202	3300000364	Soil	MTDNRNNVKPRPRRGPAWAYVLGGALGLPLAVVFVLGILHLRSMDFGVPPPGSLALFGVLLGGKAYLIFSKPLPPRSERP*
INPhiseqgaiiFebDRAFT_1014345002	3300000364	Soil	MAHDRNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
AP72_2010_repI_A10DRAFT_10322321	3300000651	Forest Soil	WAYVLGGALGLPFVVGVVLATLHLPSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERLQPEVSATIRGPMN*
JGI1027J12803_1007625558	3300000955	Soil	AWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0062595_1007470491	3300004479	Soil	CTIVRTSTVRGKRSMAHDSNDVKPRPRRGPAWAYVLGGALGLPLVVALSLATLDLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0066395_104659311	3300004633	Tropical Forest Soil	GERSMDHYSNDVKPRPRRGPAWAYVLGGALGLPFVVAVVVATLHLPSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERL*
Ga0070666_106600982	3300005335	Switchgrass Rhizosphere	MAHDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0070709_100027947	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRGNGDDIKPHPRPRRGPAWAYVFGGGLGLPIGVAFVAAALQWQPMDFEVPPPGALALFGVLLGGKAYLVFSKPLPPRPERR*
Ga0070709_115702171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GKRSMAHDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0070713_1000038048	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRGNGDDIKPHPRPRRGPPWAYVFGGGLGLPIGVAFVAAALQWQPMDFGVPPPGALALFGVLLGGKAYLVFSKPLPPRPERR*
Ga0070710_115105251	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRGNGDDIKPHPRPRFGPAWAYVFGGGLGLPIGVAFVAAALQWQPTDFGVPPPGALALFGVLLGGKAYLVFSKPLLPRPERR*
Ga0070711_1003094121	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GPAWAYVFGGGLGLPIGVAFVAAALQWQPMDFGVPPPGALALFGVLLGGKAYLVFSKPLPPRPERR*
Ga0070695_1004752401	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MAYDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0068859_1021180811	3300005617	Switchgrass Rhizosphere	RTSTVRGKRSMAHHSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0066903_1020132213	3300005764	Tropical Forest Soil	MAQYSNDVKPRPRRGPAWAYVLGGALGLPFVVAVVLATLHLPSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERL*
Ga0070715_100159466	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MAHDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERF*
Ga0070716_1001569882	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MAYDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLGVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0079222_109779312	3300006755	Agricultural Soil	MRGNGDDIKPHPRPRFGPAWAYVFGGGLGLPIGVAFVAAALRWQPMDFGIPPPGVLALFGVLLGGKAYLVFSKPLLPRPERR*
Ga0075425_1001754813	3300006854	Populus Rhizosphere	MPADGSDTRMHARRGPAWAYVFGGALGLPFAVTFLLDVLPLHSMDFSVPPPGALALFGVLLGGKAYLIFSKPLPPQPQRR*
Ga0075426_112939791	3300006903	Populus Rhizosphere	MPADGSDTRMHARRGPAWAYVFGGALGLPFAVTFLLDVLPLHSMDFSVPPPGALALFGVLLGGKAYLIFSK
Ga0097620_1021174092	3300006931	Switchgrass Rhizosphere	MAHHSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL*
Ga0079219_122882171	3300006954	Agricultural Soil	MRGNGDDIKPHPRPRFGPAWAYVFGGGLGLPIGVAFVAAALRWQPMDFGIPPPGALALFGVLLGGK
Ga0126374_107435502	3300009792	Tropical Forest Soil	MAHHSNDVKPHPRRGPAWAYVLGGALGLPIVVAVVVATLHLPSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERL*
Ga0126372_100267215	3300010360	Tropical Forest Soil	MDHHSNDVKPRPRRGPAWAYVLGGALGLPFVVAVVLATLHSPSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERL*
Ga0134126_108248671	3300010396	Terrestrial Soil	MRGNGDDIKPHPRPRRGPAWAYVFGGGLGLPIGVAFIAAALQWRPMDFEVPPPGALALFGVLLGGKAYLVFSKPLPPRP
Ga0126383_114086781	3300010398	Tropical Forest Soil	MAHNCNDVKPRPRRGPAWAYVLGGALGLPIVVGVILATLHLQSTNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPQRL*
Ga0137410_106216642	3300012944	Vadose Zone Soil	MADGENNPKPRPRRGPAWAYVLGGAVGLPFVVGFTLGFFHLHSNDSGVPPTTLVLAGAALGWVVYRIFSKPSASASRPSDLDV*
Ga0132258_101139865	3300015371	Arabidopsis Rhizosphere	MAANGNDMKPHARRGPAWAYLFGGALGLPFAVTFVLGVLHLHSMDFGVPPPGVLALFGVLLGGKAYLIFSKPLPPLPERR*
Ga0132255_1010315832	3300015374	Arabidopsis Rhizosphere	MAHDSNDIKPRPRRGPAWAYVLGGALGLPFVVAVVLATLQLQSMDLSVPPPGTLALFGVLLGGKAYLIFSKPMRPRPERL*
Ga0132255_1018618841	3300015374	Arabidopsis Rhizosphere	PHARRGPAWAYLFGGALGLPFAVTFVLGVLHLHSMDFGVPPPGVLALFGVLLGGKAYLIFSKPLPPLPERR*
Ga0182033_114044861	3300016319	Soil	MPRTNTVGGINSMAEIRNNGKTRPQRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0182035_115340942	3300016341	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLPLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0182032_115786181	3300016357	Soil	MADTSNSIKPRPRRGPAWAYVIGGAFGLPLAVAAVLALFQLRSADFGVPPPETLALFGVMLGGKAYLIFSKALPPASRGP
Ga0182040_101254022	3300016387	Soil	MPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSALHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0182039_109869982	3300016422	Soil	RLMADNSNDVKLRPRRGPAWAYLLGGALGLPFAVAFVLGVWHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPPASKRP
Ga0182038_101648291	3300016445	Soil	MPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYL
Ga0182038_113487681	3300016445	Soil	QPAQWHTPVRSGDKTMAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0187824_103272752	3300017927	Freshwater Sediment	MRGNGDDIKPHPRPRRGPAWAYVFGGGLGLPIAVAFVLAALQWQPTDFGVPPPGALALFGVLLGGKAYLLFSKPLAPR
Ga0187785_100516532	3300017947	Tropical Peatland	MRGNGDDSKQHPRPRRGPAWAYVFGGGLGLPVAVASVLGVLQWQPMDFGVPPPGALALFGVLLGGKAYLIFSKPLPPRPERRNPSAT
Ga0187778_1000038729	3300017961	Tropical Peatland	MADDGNDVKPRPRRGPAWAYVLGGALGLPFAVAFVQGMLHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLMPRSKRP
Ga0187776_100785613	3300017966	Tropical Peatland	MHNRHNCAHLYNWGKRTMADDSNNVKPRPRRGPAWAYVLGGALGLPFAVPFILGMLHLRSTDFGVPSPGTLALFGVLLGGKAYLLFSRPLPTTSE
Ga0187822_100413181	3300017994	Freshwater Sediment	MRGNGDDIKPHPRPRRGPAWAYVFGGGLGLPVAVAFVLAALHLHPMDFRVPPPGALALFGVLLGGKAYLIFSKPTPPPPERR
Ga0187773_106021112	3300018064	Tropical Peatland	MHNRHNCAHLYNWGKRTMADDSNNVKPRPRRGPAWAYVLGGALGLPFAVPFILGMLHLRSTDFGVSSPGTLALFGVLLGGKAYLLFSRPLPTTSE
Ga0210407_101056431	3300020579	Soil	MADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFLLGMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPLPLRSERP
Ga0210403_106463101	3300020580	Soil	MADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPLPLRSERP
Ga0210406_100895751	3300021168	Soil	RSSPRGVSMADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPLPLRSERP
Ga0210384_106330141	3300021432	Soil	MADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPL
Ga0242654_101995781	3300022726	Soil	MADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFVLDMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPLPLRSERP
Ga0247691_10555991	3300024222	Soil	MAHDSNDVKPRPRRGPAWAYVLGGALGLPFVVAVALATLHLQSMSSSVPPPETLVLFGVMLGGKAYLIFSKAMRPRPERL
Ga0247661_10962852	3300024254	Soil	SMAHDSNDVKPRPRRGPAWAYVLGGALGLPFLVAAALATLHLQSMSSSVPPPETLVLFGVMLGGKAYLIFSKAMRPRPERL
Ga0247670_10182253	3300024283	Soil	MAHDSNDVKPRPRRGPAWAYVLGGALGLPFVVAAALATLHLQSMSSSVPPPETLVLFGVMLGGKAYLIFSKAMRPRPERL
Ga0207699_100103632	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRGNGDDIKPHPRPRRGPAWAYVFGGGLGLPIGVAFVAAALQWQPMDFEVPPPGALALFGVLLGGKAYLVFSKPLPPRPERR
Ga0207702_117482851	3300026078	Corn Rhizosphere	MAHDSYDLKPGPRRGPAWAYVLGGALGLPLVVAVVLAALHVQSMDLSVPPPGTLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0170824_1131272451	3300031231	Forest Soil	MADDSNNVKPRARRGPAWAYVLGGAFGLPFVVAFVLGMLHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLSLRSERP
Ga0318516_100739733	3300031543	Soil	SSMAEISKNVKACPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0318534_105853012	3300031544	Soil	MSSMTEISKSVKACPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0318541_102096322	3300031545	Soil	MPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0318541_102392462	3300031545	Soil	MADNSNDVKLRPRRGPAWAYLLGGALGLPFAVAFVLGVWHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPPASKRP
Ga0318538_102316733	3300031546	Soil	MTHNCNDVKPRPRRGPAWAYVLGGALGLPIVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0318538_107589451	3300031546	Soil	WHTPVRSGDKTMAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0318573_103831572	3300031564	Soil	MAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0318542_100332082	3300031668	Soil	LIGSLHNCAHQYRPGERSMTHNCNDVKPRPRRGPAWAYVLGGALGLPIVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0318560_102365533	3300031682	Soil	ISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0307476_105506141	3300031715	Hardwood Forest Soil	GPAWAYVLGGALGLPFAVAFVLGMLHLHSTDPGVPPPGTLALFGVLLGGKAYLIFSKPLPPRSKRP
Ga0306917_101309432	3300031719	Soil	MTHNCNDVKPRPRRGPAWAYVLGGALGLPMVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0307469_100274384	3300031720	Hardwood Forest Soil	LIGSLHNCAHQYRPGERSMAYDSNDVKPRPRRGPAWAYVLGGALGLPLVVAVSLATLHLQSMNLSVPPPGTLVLFGVMLGGKAYLIFSKPMRPRPERL
Ga0307469_120009571	3300031720	Hardwood Forest Soil	MADDSNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPLRSGRP
Ga0318493_101521902	3300031723	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0306918_106710911	3300031744	Soil	TVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0306918_115478352	3300031744	Soil	MADNSNDVKLRPRRGPAWAYLLGGALGLPFAVAFVLGVWHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPQLPKRR
Ga0318502_100971601	3300031747	Soil	AEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0318509_107066081	3300031768	Soil	SGDKTMAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0318546_103512191	3300031771	Soil	MTHNCNDVKPRPRRGPAWAYVLGGALGLPMVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKP
Ga0318548_100959071	3300031793	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYL
Ga0318550_106617661	3300031797	Soil	MTHNCNDVKPRPRRGPAWAYVLGGALGLPMVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKA
Ga0318497_105467791	3300031805	Soil	CTMPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0307478_106733501	3300031823	Hardwood Forest Soil	MADDSNNVKPRPRRGPAWAYVLGGALGLPFAVAFVLGMLHLHSTDPGVPPPGTLALFGVLLGGKAYLIFSKPLPPRSKRP
Ga0318527_104418672	3300031859	Soil	VRSGDKTMAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0306919_110791862	3300031879	Soil	TMAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0318544_100680313	3300031880	Soil	HNCAHQYRPGERSMTHNCNDVKPRPRRGPAWAYVLGGALGLPMVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0306925_106659702	3300031890	Soil	MADSSDNMKPHPRRGPAWAYVIGGALGLPFAVAFILGMLHLQSTNFGVPPPATLALFGVLLGGKAYLIFSKPLPQLPKRR
Ga0318536_104583032	3300031893	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLATPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYL
Ga0318520_104496391	3300031897	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKLP
Ga0306923_103543962	3300031910	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0306921_100399821	3300031912	Soil	MPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPS
Ga0306921_102835382	3300031912	Soil	LIGSLHNCAHQYRPGERSMTHNCNDVKPRPRRGPAWAYVLGGALGLPMVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0306921_107036761	3300031912	Soil	MADNSNDVKLRPRRGPAWAYLLGGALGLPFAVAFVLGVWHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPPAS
Ga0306921_123886322	3300031912	Soil	MAEISKNVRACPRRGPAWAYVLGGALGLQLVGPLVLSMLHLRSTDFGVPAPGILALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0310916_114258441	3300031942	Soil	LMADNSNDVKLRPRRGPAWAYLLGGALGLPFAVAFVLGVWHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPQLPKRR
Ga0310909_111777491	3300031947	Soil	TNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0318530_102488612	3300031959	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLLFSK
Ga0307479_116905341	3300031962	Hardwood Forest Soil	MADDCNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSADFGVPPPVTLALFGVLLGGKAYLIFSKPLPLRSERP
Ga0306922_103080682	3300032001	Soil	MADSSDNMKPHPRRGPAWAYVVGGALGLPFAVAFILGMLHLQSTNFGVPPPATLALFGVLLGGKAYLIFSKPLPQLPKRR
Ga0318562_102401392	3300032008	Soil	MAEISNNVKARPRRGPAWAYVLGGALGLQLAAPLVLSLLHLRSADFGVPAPGILALFGVLLGGKAYLL
Ga0318575_105631192	3300032055	Soil	GLIGSLHNCAHQYRPGERSMTHNCNDVKPRPRRGPAWAYVLGGALGLPIVVAVILATLHLQSTNLSVPPPETLALFGVMLGGKAYLIFSKPMRPRPERL
Ga0318514_101234041	3300032066	Soil	MAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFS
Ga0318524_107962671	3300032067	Soil	SCRACTMPRTNTVGGINSMAEIRNNGKTRPRRGPAWAYVLGGALGLQLAGPLVLSVLHLRSADFGVPPPGVLALFGVLLGGKAYLLFSKPLPLPSKRP
Ga0306924_106630501	3300032076	Soil	MADSSDNMKPHPRRGPAWAYVIGGALGLPFAVAFILGTLHLRSTNFGVPPPATLALFGVLLGGKAYLIFSKPLPQPPKRR
Ga0307472_1004329011	3300032205	Hardwood Forest Soil	MADDCNNVKPRARRGPAWAYVLGGALGLPFAVAFVLGMLHLRSTDFGVPPPGTLALFGVLLGGKAYLIFSKPLPLRSGRP
Ga0335080_101990571	3300032828	Soil	WYGHGRSSMLGNGDDIKLHPRPRRGPAWVYVFGGGLGLPIAVAFAAAVLQWQPMDFELPPPGALTLFGVLLGGKAYLIFSKPLPHRPQRR
Ga0335077_100724383	3300033158	Soil	MLGNGDDIKLHPRPRRGPAWVYVFGGGLGLPIAVAFAAAVLQWQPMDFELPPPGALTLFGVLLGGKAYLIFSKPLPHRPQRR
Ga0335077_102451862	3300033158	Soil	MRGNGDHIKPHPRPRRGPAWAYVFGGGLGLPIAVAFALAVLQLHPMDFGVPPPGALALFGVLLGGKAYLIFSKPLPPRLERR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101997

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences