Metagenome / Metatranscriptome Family F101982

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101982
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	MTELAGVLTSRLQALWGTAVEVTAVRPLPGGASRESWDVRV
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.57 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.549 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.294 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.157 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.29% β-sheet: 18.84% Coil/Unstructured: 60.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01061	ABC2_membrane	34.31
PF01544	CorA	9.80
PF12698	ABC2_membrane_3	5.88
PF04909	Amidohydro_2	3.92
PF00271	Helicase_C	2.94
PF00005	ABC_tran	2.94
PF02909	TetR_C_1	1.96
PF00270	DEAD	1.96
PF00781	DAGK_cat	1.96
PF01179	Cu_amine_oxid	1.96
PF01790	LGT	0.98
PF08223	PaaX_C	0.98
PF00583	Acetyltransf_1	0.98
PF04075	F420H2_quin_red	0.98
PF12323	HTH_OrfB_IS605	0.98
PF02771	Acyl-CoA_dh_N	0.98
PF13354	Beta-lactamase2	0.98
PF02720	DUF222	0.98
PF13460	NAD_binding_10	0.98
PF13673	Acetyltransf_10	0.98
PF08241	Methyltransf_11	0.98
PF00291	PALP	0.98
PF07690	MFS_1	0.98
PF01327	Pep_deformylase	0.98
PF02589	LUD_dom	0.98
PF13032	RNaseH_pPIWI_RE	0.98
PF13193	AMP-binding_C	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	9.80
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	3.92
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	1.96
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.96
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.98
COG3327	DNA-binding transcriptional regulator PaaX (phenylacetic acid degradation)	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.55 %
Unclassified	root	N/A	26.47 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.98 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	69.61 %
Unclassified	root	N/A	26.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.69 %
Unclassified	root	N/A	26.47 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.02 %
Unclassified	root	N/A	26.47 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.98 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.84 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.94 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.84 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.92 %
Promicromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae	2.94 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.84 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.92 %
Cellulosimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium	1.96 %
Pseudomonas stutzeri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group	0.98 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.84 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.92 %
Cellulosimicrobium marinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → Cellulosimicrobium marinum	1.96 %
Pseudomonas stutzeri subgroup	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup	0.98 %
Pseudonocardia asaccharolytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.84 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.92 %
Cellulosimicrobium marinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → Cellulosimicrobium marinum	1.96 %
Pseudomonas stutzeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	0.98 %
Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica → Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224	0.98 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10471971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300003505\|JGIcombinedJ51221_10343709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300005164\|Ga0066815_10014044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300005332\|Ga0066388_104570320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	704	Open in IMG/M
3300005434\|Ga0070709_10208104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1389	Open in IMG/M
3300005436\|Ga0070713_101348463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300005436\|Ga0070713_102318237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300005456\|Ga0070678_100255758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1470	Open in IMG/M
3300005471\|Ga0070698_101065016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300005564\|Ga0070664_101737002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	592	Open in IMG/M
3300005587\|Ga0066654_10680272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300005610\|Ga0070763_10113935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1378	Open in IMG/M
3300005610\|Ga0070763_10549515	Not Available	665	Open in IMG/M
3300005719\|Ga0068861_100502266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300005921\|Ga0070766_10277499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1070	Open in IMG/M
3300006028\|Ga0070717_10000920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	19586	Open in IMG/M
3300006163\|Ga0070715_10108551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1306	Open in IMG/M
3300006871\|Ga0075434_100913844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	892	Open in IMG/M
3300006881\|Ga0068865_101758965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300006954\|Ga0079219_10072826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1580	Open in IMG/M
3300006954\|Ga0079219_11793957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300009521\|Ga0116222_1274583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	728	Open in IMG/M
3300009545\|Ga0105237_12572029	Not Available	520	Open in IMG/M
3300010046\|Ga0126384_11199350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300010366\|Ga0126379_11950647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	690	Open in IMG/M
3300010876\|Ga0126361_10992607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4807	Open in IMG/M
3300012951\|Ga0164300_10165373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1051	Open in IMG/M
3300013307\|Ga0157372_13375599	Not Available	508	Open in IMG/M
3300016371\|Ga0182034_10659954	Not Available	887	Open in IMG/M
3300016387\|Ga0182040_11251802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300016422\|Ga0182039_10161667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1748	Open in IMG/M
3300017792\|Ga0163161_10291480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1283	Open in IMG/M
3300017942\|Ga0187808_10145770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300017942\|Ga0187808_10332482	Not Available	688	Open in IMG/M
3300017973\|Ga0187780_10378719	Not Available	1002	Open in IMG/M
3300017975\|Ga0187782_10213865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1444	Open in IMG/M
3300018085\|Ga0187772_10596694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	785	Open in IMG/M
3300020583\|Ga0210401_10100999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2710	Open in IMG/M
3300021171\|Ga0210405_10332066	Not Available	1200	Open in IMG/M
3300021180\|Ga0210396_10201625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1778	Open in IMG/M
3300021180\|Ga0210396_11078816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300021477\|Ga0210398_10624774	Not Available	874	Open in IMG/M
3300021478\|Ga0210402_10191193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1878	Open in IMG/M
3300021479\|Ga0210410_10388586	Not Available	1250	Open in IMG/M
3300025898\|Ga0207692_10649409	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300025916\|Ga0207663_11551270	All Organisms → cellular organisms → Bacteria → Terrabacteria group	533	Open in IMG/M
3300025928\|Ga0207700_10950771	Not Available	769	Open in IMG/M
3300026118\|Ga0207675_102468658	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300026356\|Ga0257150_1032656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	750	Open in IMG/M
3300026557\|Ga0179587_10408088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → Cellulosimicrobium marinum	886	Open in IMG/M
3300027073\|Ga0208366_1033840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	572	Open in IMG/M
3300027523\|Ga0208890_1027607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300027570\|Ga0208043_1052607	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1187	Open in IMG/M
3300027767\|Ga0209655_10048023	Not Available	1426	Open in IMG/M
3300027889\|Ga0209380_10265192	Not Available	1009	Open in IMG/M
3300027905\|Ga0209415_10457161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia asaccharolytica → Pseudonocardia asaccharolytica DSM 44247 = NBRC 16224	1002	Open in IMG/M
3300028906\|Ga0308309_11042030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	708	Open in IMG/M
3300031090\|Ga0265760_10238619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300031152\|Ga0307501_10224451	Not Available	548	Open in IMG/M
3300031543\|Ga0318516_10063010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2043	Open in IMG/M
3300031543\|Ga0318516_10132028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1428	Open in IMG/M
3300031545\|Ga0318541_10497611	Not Available	682	Open in IMG/M
3300031573\|Ga0310915_10208393	Not Available	1368	Open in IMG/M
3300031573\|Ga0310915_10583880	All Organisms → cellular organisms → Bacteria → Terrabacteria group	792	Open in IMG/M
3300031640\|Ga0318555_10131445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1334	Open in IMG/M
3300031680\|Ga0318574_10611424	Not Available	639	Open in IMG/M
3300031681\|Ga0318572_10136324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1411	Open in IMG/M
3300031708\|Ga0310686_118723928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1627	Open in IMG/M
3300031715\|Ga0307476_11415138	Not Available	506	Open in IMG/M
3300031718\|Ga0307474_11463624	Not Available	538	Open in IMG/M
3300031719\|Ga0306917_10049687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2816	Open in IMG/M
3300031719\|Ga0306917_11045354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300031723\|Ga0318493_10075128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1655	Open in IMG/M
3300031723\|Ga0318493_10837556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300031736\|Ga0318501_10739644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300031748\|Ga0318492_10015471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3217	Open in IMG/M
3300031751\|Ga0318494_10697573	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300031769\|Ga0318526_10458995	Not Available	520	Open in IMG/M
3300031782\|Ga0318552_10232678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae	934	Open in IMG/M
3300031797\|Ga0318550_10324912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300031798\|Ga0318523_10021273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2829	Open in IMG/M
3300031832\|Ga0318499_10135327	All Organisms → cellular organisms → Bacteria → Terrabacteria group	960	Open in IMG/M
3300031835\|Ga0318517_10206887	Not Available	884	Open in IMG/M
3300031846\|Ga0318512_10174305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1045	Open in IMG/M
3300031910\|Ga0306923_12317439	Not Available	535	Open in IMG/M
3300031938\|Ga0308175_103124283	Not Available	514	Open in IMG/M
3300031954\|Ga0306926_12093756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300032001\|Ga0306922_10359220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1562	Open in IMG/M
3300032010\|Ga0318569_10305476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300032035\|Ga0310911_10819151	Not Available	538	Open in IMG/M
3300032039\|Ga0318559_10380207	Not Available	658	Open in IMG/M
3300032052\|Ga0318506_10131236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1089	Open in IMG/M
3300032068\|Ga0318553_10351532	Not Available	771	Open in IMG/M
3300032089\|Ga0318525_10177315	Not Available	1095	Open in IMG/M
3300032089\|Ga0318525_10425665	Not Available	680	Open in IMG/M
3300032091\|Ga0318577_10237800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	872	Open in IMG/M
3300032160\|Ga0311301_10791748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300032770\|Ga0335085_10098121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3795	Open in IMG/M
3300032783\|Ga0335079_12132249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	536	Open in IMG/M
3300032828\|Ga0335080_10864676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → Cellulosimicrobium marinum	930	Open in IMG/M
3300033158\|Ga0335077_10195876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2276	Open in IMG/M
3300033158\|Ga0335077_11141170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.18%
Host-Associated	Host-Associated	8.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Plants	Host-Associated → Plants	8.82%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.75%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104719711	3300001867	Forest Soil	MTELAGVLTSRLRALWGPAVEVTAVRPLPGGASRESWDVLVRLAG
JGIcombinedJ51221_103437092	3300003505	Forest Soil	MTEASGLASVLAARLRALWDAQVEVTGVRPLPGGASRESWDVRVRTAGAAHLP
Ga0066815_100140443	3300005164	Soil	MTELAGALTSRLRALWGPAAEVTAVRPLPGGASRESWDIRVRLDSDG
Ga0066388_1045703201	3300005332	Tropical Forest Soil	MTELAGVLTSQLQALWETDVEVTAVRPLPGGASRESWDVR
Ga0070709_102081041	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSVTEPPGLAGVLASRLAALWGMQADVTGVRPLAGGASRESWDVR
Ga0070713_1013484631	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTELAGALTSRLRTLWGPAVAVTEVRPMPGGASRESWDVRVRTG
Ga0070713_1023182371	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAGVLTSRLQALWGPAVEVSAVRPMPGGASRESWDIEVQTPG
Ga0070678_1002557583	3300005456	Miscanthus Rhizosphere	MTELADILTERLQALWGPAVEVSAVRPMPGGASRESWDIEVQTPG
Ga0070698_1010650162	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTELAGALTSRLRTLWGPAIEVTEVRPMPGGASRESWHVRVRASDGAE
Ga0070664_1017370022	3300005564	Corn Rhizosphere	MTELAGVLTSRLRTLWGPAVAVTEVRPMPGGASRESWDVRVRTEG
Ga0066654_106802722	3300005587	Soil	MTELADILTERLRALWGTAVTVSAVRPMPGGASRESWDI
Ga0070763_101139351	3300005610	Soil	MTEASGLASALASRLRALWGTEAAVTGVRPLPGGASRE
Ga0070763_105495151	3300005610	Soil	MTETSGLASALAARLGALWGTQAEVTGVRPLPGGASRESW
Ga0068861_1005022661	3300005719	Switchgrass Rhizosphere	MTELADILTERLQALWGPAVEVSAVRPMPGGASRESWD
Ga0070766_102774991	3300005921	Soil	MTEASGLASALTSRLRALWGTEAAVTGVRPLPGGASRESWDV
Ga0070717_100009201	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTELAGVLTSRLQALWGTAVEVTAVRPLPGGASRESWDVRV
Ga0070715_101085511	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTELAGALTSRLRTLWGPAVEVTEVRPMPGGASRESWDVRVR
Ga0075434_1009138441	3300006871	Populus Rhizosphere	MTELAGALTSRLRTLWGPAVAVTEVRPMPGGASRESWDVRV
Ga0068865_1017589651	3300006881	Miscanthus Rhizosphere	MTELAGVLTARLRTLWGPAVEVSAVRPMPGGASRESWDI
Ga0079219_100728263	3300006954	Agricultural Soil	MTELADILTARLQALWGPAVEVSAVRPMPGGASRESW
Ga0079219_117939572	3300006954	Agricultural Soil	MTELAGALTSRLRTLWDPAVEVSAVRPMPGGASRESWDIEV
Ga0116222_12745832	3300009521	Peatlands Soil	MTEASGLTSALASRLGALWSTEVEVTGLRPLPGGASRESWDV
Ga0105237_125720291	3300009545	Corn Rhizosphere	MTELAGVLTSRLRTLWGPAVEVSAVRPMPGGASRE
Ga0126384_111993501	3300010046	Tropical Forest Soil	MTELAGILTERLRALWGPAVTVGAVRPMPGGASRESWDIEVQTPGQA
Ga0126379_119506471	3300010366	Tropical Forest Soil	MTELADVLASSLQALWETDVEVIGLRQLAGGASRESWDVR
Ga0126361_109926071	3300010876	Boreal Forest Soil	MTETPGLASALESRLQALWGTEAAVTGVRPLPGGASRESWDFRV
Ga0164300_101653733	3300012951	Soil	MTELADILTERLQALWGPAVEVSAVRPMPGGASRESWDIEVQ
Ga0157372_133755991	3300013307	Corn Rhizosphere	MTEMAGVLTSRLQALWGPAVEVSAVRPMPGGASRESWDIEVQTPG
Ga0182034_106599541	3300016371	Soil	MTEASGLASALASRVRALWGTEAEVTGVRPLPGGASRESWDVRVR
Ga0182040_112518021	3300016387	Soil	MTGPSGLADALASRLRALWGTEVQVTGVRLVPGGASRESW
Ga0182039_101616674	3300016422	Soil	MTETSALTSALASRLRVLWGTEAQVIGIRLLPGGASRESWDVQLRTSDGTERRLILL
Ga0163161_102914801	3300017792	Switchgrass Rhizosphere	MTELADILTERLQALWGPAVEVSAVRPMPGGASRESWDIEVQTP
Ga0187808_101457703	3300017942	Freshwater Sediment	MEPAGQTRPAAAGLASTLASRLRALWGTEAEVTGVRPLPGGASRESWDVR
Ga0187808_103324821	3300017942	Freshwater Sediment	MTEASGLAGALASRLGALWGTQVEVSGLRALPGGASRESWD
Ga0187780_103787193	3300017973	Tropical Peatland	MTEAQGLAGALASRLRTLWGTEAEVTGVRPLPGGASRESW
Ga0187782_102138651	3300017975	Tropical Peatland	MTEASGLASALSSRLRALWGTQVEVTGVRPLPGGASRESWDVRVRAAGDA
Ga0187772_105966942	3300018085	Tropical Peatland	MTGASGLASVLTSRLRALWGTEAEVTGIRPLPGGASRESWDVRVR
Ga0210401_101009995	3300020583	Soil	MTEASGLASALASRLQALWGTEAAATGVRPLPGGASR
Ga0210405_103320661	3300021171	Soil	MTEASGLASALASRLQALWGTEAAITGVRPLPGGA
Ga0210396_102016251	3300021180	Soil	MTELAGALTSRLEALWGPAVAVAEVRPMPGGASRESWDV
Ga0210396_110788161	3300021180	Soil	MTAASGLASVLTSRLQALWGTAVEVTGVRPLPGGASRESWDVQARTPSDAQADDTQASYP
Ga0210398_106247741	3300021477	Soil	MTEASGLASALASRLQALWGTEAAATGVRPLPGGASRESWDVRVRTAGGAERRL
Ga0210402_101911931	3300021478	Soil	MTELAGALTSRLRTLWGPAVDVTEVRPMPGGASRESWDVR
Ga0210410_103885861	3300021479	Soil	MTEASGLASALASRLQTLWGTEATVTGVRPLPGGASRESWDVQVRTA
Ga0207692_106494091	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTELADILTERLQALWGPAVEVSAVRPMPGGASRESWDIGVRGPGQA
Ga0207663_115512701	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MAGVLTSRLQALWGPAVEVSAVRPMPGGASRESWDIEVQTPGEAQRHL
Ga0207700_109507712	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTELAGALTSRLRTLWGPAVAVTEVRPMPGGASRESW
Ga0207675_1024686581	3300026118	Switchgrass Rhizosphere	MTELAGVLTSRLRTLWGPAVEVSAVRPMPGGASRESWDIEVRRPGQAQHH
Ga0257150_10326561	3300026356	Soil	MTEASGLASALASRLQALWGTEAAVTGVRPLPGGASRESWDVRVRTAGG
Ga0179587_104080881	3300026557	Vadose Zone Soil	MTELAGVLTSRLRTLWGPAVEATEVRPMPGGASRESWEVRVRLAG
Ga0208366_10338401	3300027073	Forest Soil	MTEAPGLASALASRLQALWGTEAAVTGVRPLPGGASRESWDVR
Ga0208890_10276072	3300027523	Soil	MTELAGVLTSRLQALWGTAVEVTAVRPLPGGASRESWDVRVRTAG
Ga0208043_10526072	3300027570	Peatlands Soil	MTGVSGLASVLAPRLRALWGAEAEVTDVRPLPGGASRESWGIRVRTAG
Ga0209655_100480231	3300027767	Bog Forest Soil	MMTEASGLASALASRLQAVWGTEAAVTGVRPLPGG
Ga0209380_102651921	3300027889	Soil	MTEASGLASALTSRLRALWGTEAAVTGVRPLPGGASRECW
Ga0209415_104571611	3300027905	Peatlands Soil	MTGASGLASALASRLQALWGTEAAVTGVRPLPGGASRESWDVRVRMASGA
Ga0308309_110420301	3300028906	Soil	MTEASGLASALASRLRALWGTEAAVTGVRPLPGGASRESWDVRVRTAGGAER
Ga0265760_102386191	3300031090	Soil	MTEASGLASALASRLRALWGTEAAVTGVRPLPGGA
Ga0307501_102244512	3300031152	Soil	MTELAGVLTSRLRTLWGPAVEVSAVRPMPGGASRESWDIEVHR
Ga0318516_100630101	3300031543	Soil	MVMTEASGLADALASRLRALWGTDVEVTGLRQLSGGASRESWDIGV
Ga0318516_101320281	3300031543	Soil	MTGPSGLADALASRLRALWGTEVQVTGVRLVPGGASRESWDVRVRTAGDAQRR
Ga0318541_104976113	3300031545	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRV
Ga0310915_102083934	3300031573	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRVRTAGDAQL
Ga0310915_105838801	3300031573	Soil	MTDLAGVLTSRLQAIWGPAVEVTAIRPLPGGASRESWDVRVRLAGPGLAG
Ga0318555_101314452	3300031640	Soil	MTGPSGLADALASRLRALWGTEVQVTGVRLVPGGASRESWDVR
Ga0318574_106114243	3300031680	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRVRTAGDAQLP
Ga0318572_101363241	3300031681	Soil	MTGPSELADALASRLRALWGTEVQVTGVRLVPGGASRESRHHRRYRI
Ga0310686_1187239282	3300031708	Soil	MTGTSGLASALASRLQTLWGTEAQVASVRPLPGGASR
Ga0307476_114151382	3300031715	Hardwood Forest Soil	MTELAGALTSRLRTLWGPAVAVTEVRPMPGGASRESWDVRVRASNG
Ga0307474_114636242	3300031718	Hardwood Forest Soil	MTELAGALTSRLRTLWGPAVAVTEVRPMPGGASRESWDV
Ga0306917_100496875	3300031719	Soil	MTETSALTSALASRLRVLWGTEAQVIGIRLLSGGASRE
Ga0306917_110453542	3300031719	Soil	MTDLAGVLTSRLQALWGPAVEVTEVRPMPGGASRESWDVGVRAAD
Ga0318493_100751283	3300031723	Soil	MTDLAGVLTSRLQAIWGPAVEVTAIRPLPGGASRESWDVRVRLAG
Ga0318493_108375562	3300031723	Soil	MTDLAGALTLRLQSLWGPAVEVISVRPLPGGASRES
Ga0318501_107396442	3300031736	Soil	MTELAGVLTARLQALWGPAVEVTAIRPMPGGASRESWDVRVRTGDPGGTERH
Ga0318492_100154711	3300031748	Soil	MTGPSRLADALASRLRALWGTEVQVTGVRLVPGGASRESRHHRRYRI
Ga0318494_106975731	3300031751	Soil	MTEASGLASALASRLRALWGTEAEVTGVRPLPGGASRESWD
Ga0318526_104589951	3300031769	Soil	MIEASGLASALASRLRALWGTETEVTGVRPLASRSR
Ga0318552_102326781	3300031782	Soil	MTELAGVLASRLHALWGTAVEVTAVRPLPGGASRESWDVRVRLADGLAGEG
Ga0318550_103249122	3300031797	Soil	MTELAGVLTSRLQALWGTAVEVTAVRPLPGGASRESWDVRVRTEGGTE
Ga0318523_100212734	3300031798	Soil	MTELAGVLTSRLQALWGTAVEVTAVRPLPGGASRESWDVRVRTEGGTERRLI
Ga0318499_101353272	3300031832	Soil	MVMTEASGLADALASRLRALWGTDVEVTGLRQLSGGASRESWDIGVRTAGESERR
Ga0318517_102068873	3300031835	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRVRTAG
Ga0318512_101743051	3300031846	Soil	MTELAGVLASRLHALWGTAVEVTAVRPLPGGASRESWDVR
Ga0306923_123174391	3300031910	Soil	MTEASGLASALASRLRALWGTEAEVTGVRPLPGGAS
Ga0308175_1031242831	3300031938	Soil	MTELAGVLTSRLQTLWGPAVEVTAVRPMPGGASRESWDIE
Ga0306926_120937561	3300031954	Soil	MTETAGLASALASRLRALWDTEAEVTGVGLLPGGASRESWDVRVRTAGGA
Ga0306922_103592203	3300032001	Soil	MTELAGVLASRLHALWGTAVEVTAVRPLPGGASRESWDVRV
Ga0318569_103054762	3300032010	Soil	MTDLAGVLTSRLQAIWGPAVEVTAIRPLPGGASRESWDVRVRLAGPGLA
Ga0310911_108191512	3300032035	Soil	MTEASGLASALASRVRALWGTEAEVTGVRPLPGGASRESWDVRVRTAGDARL
Ga0318559_103802071	3300032039	Soil	MIEASGLASALASRLRALWGTETEVTGVRPLPGGASRESWDVRVRTAGDAHLPV
Ga0318506_101312362	3300032052	Soil	MTGPSGLADALASRLRALWGTEVQVTGVRLVPGGASRES
Ga0318553_103515321	3300032068	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRVRTAGDAQLPVA
Ga0318525_101773151	3300032089	Soil	MTEASGLASVLASRLRALWGTEAEVAEIRLLPGGASRESWDVRVRTAGDAQLPV
Ga0318525_104256651	3300032089	Soil	MTETSGLASALASRLRALWDTEAEVTGVGLLPGGASRESWDVRVRTAAGA
Ga0318577_102378002	3300032091	Soil	MTELAGVLASRLHALWGTAVEVTAVRPLPGGASRES
Ga0311301_107917481	3300032160	Peatlands Soil	MTETSGLASALAARLGALWGTQAEVTGVRPLPGGASRESWDVRVRMAGDA
Ga0335085_100981211	3300032770	Soil	MTELAGVLTSRLQALWGPAVEVTAIRPLPGGASRESWDVRVRLAG
Ga0335079_121322492	3300032783	Soil	MTELAGALTSRLRALWGPAVEVTAVRPLPGGASRESWDVRVRLAGE
Ga0335080_108646762	3300032828	Soil	MTELAGLLTSRLRALWSTAAEVTAVRPLPGGASRESWDVRVRLTG
Ga0335077_101958764	3300033158	Soil	MTEASGLADMLASRLRVLCGTDVEVTGLRQLSGGASRESWDIRVRTAGQTERR
Ga0335077_111411701	3300033158	Soil	MTELAGVLTSRLQALWGPAVEVTAIRPLPGGASRESWDVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101982

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences