NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101937

Metagenome Family F101937

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101937
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 60 residues
Representative Sequence MTGGINLDDGDIGITPEAGIEILQQRVSETQSELDALEDLARRNDIPPGILRGH
Number of Associated Samples 81
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 10.34 %
% of genes near scaffold ends (potentially truncated) 50.98 %
% of genes from short scaffolds (< 2000 bps) 47.06 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (53.922 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(50.000 % of family members)
Environment Ontology (ENVO) Unclassified
(47.059 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(54.902 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.15%    β-sheet: 0.00%    Coil/Unstructured: 65.85%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF11737DUF3300 56.86
PF00248Aldo_ket_red 3.92
PF07228SpoIIE 3.92
PF11453DUF2950 3.92
PF08281Sigma70_r4_2 1.96
PF00873ACR_tran 0.98
PF13590DUF4136 0.98
PF13646HEAT_2 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.92 %
UnclassifiedrootN/A46.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10887760All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300002914|JGI25617J43924_10247356All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005167|Ga0066672_10909951All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300005177|Ga0066690_10760997All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300005447|Ga0066689_10507568All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300005554|Ga0066661_10481740All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300005557|Ga0066704_10676805All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300005568|Ga0066703_10558385All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300005574|Ga0066694_10028495All Organisms → cellular organisms → Bacteria2492Open in IMG/M
3300005586|Ga0066691_10265859All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300006034|Ga0066656_10471442Not Available818Open in IMG/M
3300006058|Ga0075432_10373640All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300006163|Ga0070715_10707627Not Available602Open in IMG/M
3300006796|Ga0066665_10018794All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4278Open in IMG/M
3300009038|Ga0099829_10093970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2321Open in IMG/M
3300010360|Ga0126372_11621542All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300012189|Ga0137388_10976368All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300012200|Ga0137382_10396039All Organisms → cellular organisms → Bacteria973Open in IMG/M
3300012202|Ga0137363_10860905All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300012351|Ga0137386_10472894All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300012917|Ga0137395_10639511All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300012918|Ga0137396_11306052All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300012924|Ga0137413_10249300All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300012929|Ga0137404_10266605All Organisms → cellular organisms → Bacteria1475Open in IMG/M
3300012929|Ga0137404_11181490All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300012929|Ga0137404_11416715All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300012930|Ga0137407_11219445All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium714Open in IMG/M
3300012944|Ga0137410_10055912All Organisms → cellular organisms → Bacteria2825Open in IMG/M
3300012944|Ga0137410_10440536All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300012957|Ga0164303_10906807All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300015051|Ga0137414_1214902All Organisms → cellular organisms → Bacteria5066Open in IMG/M
3300015053|Ga0137405_1341637All Organisms → cellular organisms → Bacteria4094Open in IMG/M
3300021086|Ga0179596_10497067All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300021168|Ga0210406_10145030All Organisms → cellular organisms → Bacteria1995Open in IMG/M
3300021178|Ga0210408_10983482All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300021405|Ga0210387_10198184All Organisms → cellular organisms → Bacteria1741Open in IMG/M
3300021478|Ga0210402_11891943All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300025906|Ga0207699_11316894All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300025916|Ga0207663_11278494All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium591Open in IMG/M
3300026314|Ga0209268_1095663All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300026317|Ga0209154_1286279All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300026475|Ga0257147_1063548All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300026490|Ga0257153_1083042All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300026507|Ga0257165_1115673All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300026551|Ga0209648_10057444All Organisms → cellular organisms → Bacteria3310Open in IMG/M
3300026555|Ga0179593_1122801All Organisms → cellular organisms → Bacteria → Acidobacteria3827Open in IMG/M
3300027480|Ga0208993_1095121All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium545Open in IMG/M
3300027565|Ga0209219_1103388All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300027660|Ga0209736_1032142All Organisms → cellular organisms → Bacteria1554Open in IMG/M
3300027678|Ga0209011_1017135All Organisms → cellular organisms → Bacteria2368Open in IMG/M
3300027903|Ga0209488_10824559All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
3300027907|Ga0207428_10940589All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300028536|Ga0137415_10941230All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300028906|Ga0308309_10606135All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300031715|Ga0307476_10443490All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300031754|Ga0307475_11258056All Organisms → cellular organisms → Bacteria574Open in IMG/M
3300032180|Ga0307471_100138200All Organisms → cellular organisms → Bacteria2314Open in IMG/M
3300032180|Ga0307471_104141327Not Available512Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil50.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil15.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil8.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.88%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026341Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-AEnvironmentalOpen in IMG/M
3300026475Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-AEnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026507Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-BEnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1088776023300001593Forest SoilNFAEGDIGITPEAGIEILQQRVSETQTEFNALEELARRNDIPPGTLRGQGDSEAQANGLN
JGI25617J43924_1024735623300002914Grasslands SoilMIGGINLDDGDIGFTPEVGIEILQQRVSETQSELDALEDLARRNDIEPGTLRGQ*
Ga0066672_1090995123300005167SoilTGGINLDDGDIGITPEAGIEILQQRVSETQSELDALEEVARRNDIPPGILRGQ*
Ga0066680_1006601613300005174SoilDLRRLTWERSLRDATGGINLDEGDASITAQAGIEILQRRVREIQSEINALEALACHNAIPPGALRGE*
Ga0066690_1076099723300005177SoilGINLDDGDIGITPEAGIEILQQRVSETQSELDALEEVARRNDIPPGILRGQ*
Ga0066689_1050756813300005447SoilDDARELKSTTAGINLAESDIGITPEATITILENRMLETQIKLDALEDLARRNDIPPGTLRGR*
Ga0066661_1048174023300005554SoilTMAAGINLDEGGIGITPEAGIEILQQRVKEAQAELDDLEDLARRNEIEPGTLRGE*
Ga0066704_1031521623300005557SoilRNTTGGINLDEGDIGITPEAGIEILRQRAKETQTELDALDDLARRNGIPPGALRGQ*
Ga0066704_1067680523300005557SoilGGINLDEGDIGITPEAGIEILQQRAKETQTELAALDDLARRNDIPPGTVRGE*
Ga0066703_1055838513300005568SoilIEDARSLKTMTGGINLEEGDIGITPEAGIEFLQQRMYETQTKLDALEDLAHRNDIEPGTLRGQ*
Ga0066694_1002849553300005574SoilSLKTTTGGINLEEGNIGITPEAGVEILQQRATEVQEKLSDLEDLARRNDIEPGTLRGQ*
Ga0066691_1026585913300005586SoilENVKSLKTMTGGINLDDGDIGITPEAGIEFLQQRVNETQTECDALEDLARRNDILPGTLRGQ*
Ga0066656_1047144213300006034SoilSLRETTGGINLDEGDVGITPEAGIEILRQRAEETQSKIDALEDLARLNDIEPGVLGGQ*
Ga0075432_1037364023300006058Populus RhizosphereTKTGGIDLEEENIGITPEAGLEILQQRVDEAQAELDALEDLARHNDIPPGALRGQ*
Ga0070715_1070762713300006163Corn, Switchgrass And Miscanthus RhizosphereAIEEAASLKTTTGGINLDDGHTGITPESGIEILQQRVSKAQAELDALEDLARRNDIDPGTLRGE*
Ga0066665_1001879453300006796SoilSLRQSTGGIDLVGDDFATTPEAGIEILQHRVNETQTELDELEDLARRNDIPPGTLRGQ*
Ga0099794_1065962313300007265Vadose Zone SoilAIDDVRNLRNTTGGINLDEGDIAITPEVGIEILERHVNETQTELNALEDLARRHDIPPGTLRGQ*
Ga0099795_1055299223300007788Vadose Zone SoilDVRSLGKTTSGINLDEGDIAITPEVGIEILERHVDEVQTEINDLEDLARHHDIPPGTLRGQ*
Ga0099829_1009397013300009038Vadose Zone SoilTMTGGINLDGGDIGITPEAGIEILQRRVYEIQSELDDLEDLARHNDIPPGTLRGQ*
Ga0099829_1136068323300009038Vadose Zone SoilIEDARSLKTMTGGINLDGGDIGITPEAGIEILEQCVMEEQARSEALAHLARRNDIEPGTLRGL*
Ga0099830_1025498313300009088Vadose Zone SoilKNTTGGGINFDEGDIAITPEAGVEILQQRAKETQTELDTLDDLARRNDIPPGMVRGQ*
Ga0099830_1061910723300009088Vadose Zone SoilEYWQAIDDARGLRKTTGGINLDEGDIAITPEVGIEILERHVDEVQKEINDLEDLARRHDIPPGTLRGQ*
Ga0099828_1120383513300009089Vadose Zone SoilEYRQALDDVRNQGKTTGGINLDEGDVAITPEVGIAILEGHVIEVQTELNALEDLARRHDISPGMLRGQ*
Ga0126372_1162154223300010360Tropical Forest SoilRQALEDARSLRTTTGGMNFMEGHIGITPEAGIEILQRRVREEQAKLDALEDLARRHDIPPGALRGQ*
Ga0137391_1038047213300011270Vadose Zone SoilAQSFRVTTGGINLDEGDIAITPEAGIEVLRQRVSEAKTELDALEDLARRNDIPPGALRGQEVP*
Ga0137391_1049842523300011270Vadose Zone SoilLRKTTGGINLDEGELAITPEVGIEILERHVDEVQKEINDLEDLARRHDIPPGTLRAQ*
Ga0137391_1057180023300011270Vadose Zone SoilLDDARSLRKTSGGISLDEGDIGITPEAGIEILQQEVNEPQTQLDELEDLAHRNGIPPGVLRGL*
Ga0137388_1097636813300012189Vadose Zone SoilTIEDARSLKTTTGGINLEEGDIGITPEAGIEILQRRVTEVQEKLGDLEDLARRNDIEPGTLRGQ*
Ga0137382_1039603923300012200Vadose Zone SoilLEDARSLKETTGGINLDEGDVSITPEAGIEILQERVSETQSELNDLEDLARRNDIEPGTLRGQ*
Ga0137363_1086090513300012202Vadose Zone SoilSIEDAKSLKTTKGGINLEKGDIGITLEAGIEILQQRVSETQSELDALEDLARRNDIPPGALRGQ*
Ga0137379_1067094223300012209Vadose Zone SoilYQQALEDAQSLRNTTGGIHLDEGDIGITPEAGIEILRQRAKETQTELDALDDLARRNGIPPGALRGQ*
Ga0137386_1047289413300012351Vadose Zone SoilSLRKTAGGINLDEGDIGVTPEAGIEILQQRVEEAQAEFDDLEDLARRNDIPPGALRGQ*
Ga0137371_1038873813300012356Vadose Zone SoilDAESLRNTTGGINLDEGDIGITPEAGIEILRQRAKETQTELDAQDDLARRNGIPPGALRGQ*
Ga0137361_1065749213300012362Vadose Zone SoilRQTQLRGYEQALEDSQSLKNTTGGGINFDEGDIAITPEAGVEILQQRAKETQTELDTLDDLARRNDIPPGMMRGR*
Ga0137361_1067400213300012362Vadose Zone SoilYQQALEDAQSLRNTTGGIHLDEGDIGITPEAGIEILRQRAEETQTELDALDDLARRNGIPPGALRGQ*
Ga0137358_1009489913300012582Vadose Zone SoilEQALEDVQSLKNTTGGINFDEGDIAITPEAGVEILQQRAKETQTELDTLDDLARRNDIPPGMMRGQ*
Ga0137398_1101615913300012683Vadose Zone SoilLRDYRQAIDDVRNLRNTTGGINLDEGDIAITPEVGIEILERHVNEVQTELNALEDLARRHDIPPGTLRGQ*
Ga0137397_1046050723300012685Vadose Zone SoilRNLRNTTGGINLDEGAIAITPEVGIEILERRVTEVQTELNALEDLARRHDIPPGTLRGE*
Ga0137395_1063951123300012917Vadose Zone SoilEDAKELKTTTGGINLDEGDIGITPEASIEILQQRASEAQASLDSLEDLARHNDIPPGALRAQ*
Ga0137395_1107913913300012917Vadose Zone SoilGGINLDEGDIAITPEVGIEILERHMNEVQTELNSLEDLARRHDIPPGTLRGQ*
Ga0137396_1130605223300012918Vadose Zone SoilARSLRKTTGGINLDDGDIGITPEAGIEILQQRVSETQSELDALEDLARRNDILPGILRSH
Ga0137413_1024930013300012924Vadose Zone SoilTSLKTVAGGINLDEGDIGITPQAGIEILQQRLSEAQSQLDALEDMARRNGIEPGTLRGQ*
Ga0137413_1108546913300012924Vadose Zone SoilTTGGINLDEGDIAITPEVGIEILERHVNEVQTELNALEDLARRHDIPPGTLRGE*
Ga0137404_1026660533300012929Vadose Zone SoilIEDAKSLKTMTGGINLEERDIGITPDAGLGILQQRISETQSELDALEDLARRNDIPPGTLRGQ*
Ga0137404_1118149013300012929Vadose Zone SoilTGGINLEEGDIGITLEAGIEILQQRVSETQAKRDALQDLARRNAIPPGALRGQ*
Ga0137404_1141671513300012929Vadose Zone SoilGGMNLEEGDIGVTPEAGVEILQQRVSETQSELDALEDLARRNDIPPGTLRSQ*
Ga0137407_1121944513300012930Vadose Zone SoilSLRNTTGGINLDEGDIGITPDAGIEILQQRAKETQTELDALDDLARRNGIPPGALRGQ*
Ga0137407_1179181723300012930Vadose Zone SoilESLRNTTGGINLDEGDIGITPEAGIEILRQRAEETQTELDALDDLARRNGIPPGALRGQ*
Ga0137410_1005591213300012944Vadose Zone SoilMTGGTNLGGGDVGITREAGIEILEQRVLQQQARVDDLEDLARRNEIEPGTLRGQ*
Ga0137410_1025487213300012944Vadose Zone SoilNQLRDYRQAIDDVRNLRNTTGGINLDEGDIAITPEVGIEILERHVNETQTELNALEDLARRHDIPPGTLRGQ*
Ga0137410_1044053623300012944Vadose Zone SoilTTGGINLEERDIGITPEAGIEILQQRASETQTELDALEDLARRNDIPPGSLRGPVN*
Ga0137410_1057924823300012944Vadose Zone SoilIDDVRNLRKTTGGINLDEGDIAITPEVGIEILERHVDEVQTEINDLEDLARRHGIPPGTLRGQ*
Ga0137410_1145155513300012944Vadose Zone SoilTTGGINLDEGDLAITPEVGIEILERHVSEVQTEINDLEDLARRHNIPPGTLRGQ*
Ga0164303_1090680723300012957SoilERDVESLKAITGGIDLDEGDTGITPEASMEILQEHGNEAKAELDALEDLARRNDIPPGTLREQ*
Ga0137414_121490273300015051Vadose Zone SoilMTGGINLDDGDIGITPEAGIEILQQRVSETQSELDALEDLARRNDIPPGILRGH*
Ga0137405_134163713300015053Vadose Zone SoilVRNLRNTTGGINLDEGDIAITPEVALNPGEAREEMQTELNALEDLARRHDIPPGTLRGE*
Ga0137408_128637733300019789Vadose Zone SoilSLRNTTGGINLDEGDIGITPEAGIEILRQRAEETQTELDALDDLARRNGIPPGALRGQ
Ga0179594_1025687823300020170Vadose Zone SoilTTGGINVDEGDIGITPEAVIEILQHRVNETQAELDALQDLARRNDIPPGTLRGQ
Ga0179594_1027842213300020170Vadose Zone SoilNLRNTTGGINLDEGDIAITPEVGIEILERHVNETQTELNALEDLARRHDIPPGTLRGQ
Ga0210407_1015539033300020579SoilRSLKDMTGGINLDEGHLAITPQAGIEILQRRVNEAQMELEALEDLARHNDIPPGTLRGQ
Ga0179596_1010851023300021086Vadose Zone SoilEDARSLRKTTGGINLDEGDLAITPEVGIEILERHVSEVQMEIGELEDLARRHDIPPGTLRGQ
Ga0179596_1049706723300021086Vadose Zone SoilTTGGINLDEGDVGITPEAGIEILQQRVEETETKLEALEDLARCNNIPPGALRGQ
Ga0210406_1014503023300021168SoilMTGGMNRDDGDIATAPEAGIEILQRRVIETQSELDALEDLARRNFVPPDTLRGR
Ga0210408_1098348223300021178SoilLKTTAGGINLEESDMGITPEAGIEILQQRVSEAQSELDALEEQARRNGIEPGTLRSR
Ga0210387_1019818413300021405SoilDARSLRVSTGGINLTDEDFATTPEAGIEILQQRVSETQSELVALEDLARRNDIEPGTLRG
Ga0210402_1189194323300021478SoilGGINLDAGDIGITPEAGIETLQQRVRETQLELDTLEDLARRNDIPPGILRGH
Ga0137417_109038323300024330Vadose Zone SoilRNLRNTTGGINLDEGDIAITPEVGIEILERHVNEVQTELNALEDLARRHDIPPGTLRGQ
Ga0137417_119618333300024330Vadose Zone SoilRNTTGGINLDEGDIAITPEVGIEILERHVNEVQTELNALEDLARRHDIPPGTLRGQ
Ga0137417_1454578103300024330Vadose Zone SoilVRNLRNTTGGINLDEGDIAITPEVGIEILERHVNEVQTELNALEDLARRHDIPPGTLRGE
Ga0207699_1131689423300025906Corn, Switchgrass And Miscanthus RhizosphereLQDARSLEDTRSGIDLYDGDIGITPEAGIEVLQQRVNETQTELDALEDLARRNDMFPGTLRSQ
Ga0207663_1127849413300025916Corn, Switchgrass And Miscanthus RhizosphereMAGGINLEEGDIGITPEAGIKILQDRVNETESELDTLEDLARRNDIPSGTLRGQSE
Ga0209240_112698813300026304Grasslands SoilEDSQSLKNTTGGGINFDEGDIAITPEAGVEILQQRAKETQTELDTLDDLARRNDIPPGMMRGR
Ga0209268_109566333300026314SoilSLKTTTGGINLEEGNIGITPEAGVEILQQRATEVQEKLSDLEDLARRNDIEPGTLRGQ
Ga0209154_128627923300026317SoilMTGGINLDDGDIGITPEAGIEILQQRVSETQSELDALEEVARRNDIPPGILRGQ
Ga0257151_102911513300026341SoilRDYRQAIDDVRNLRNTTGGINLDEGDIAITPEVGIEILERHVNETQTELNALEDLARRHDIPPGTLRGQ
Ga0257147_106354823300026475SoilSLRNSTGGINFDESNIGITPEAGIEILQQRINETQAKLDALEDLAHGNGIAPGALRVE
Ga0257153_108304213300026490SoilLKNTTGGGINFDEGDIAITPEAGVEILQQRAKETQTELDTLGDLARRNDIPPGMMRGQ
Ga0257165_111567313300026507SoilTGGVDLDRGDIGITPEAGIEILQRRVYEIQSELDDLEDLARHNDIPPGMLRGQ
Ga0209806_117359623300026529SoilSRYQQALEDAQSLRNTTGGINLDEGDIAITPEAGIEILRQRATETQTELDALDDLARRNGIPPGALRGQ
Ga0209056_1008925843300026538SoilRNTTGGINLDEGDIGITPEAGIEILRQRAKETQTELDALDDLARRNGIPPGALRGQ
Ga0209648_1005744443300026551Grasslands SoilNLDAGDVGITPQAGIEILQRRVHETQTELGALEDLARRHDIPPGTLRGE
Ga0179593_112280153300026555Vadose Zone SoilMTGGINLDEGDVGITPEASIEILQQRVEEARTELEALEDLARRNDIPPGILRGQ
Ga0208993_109512113300027480Forest SoilSQAIEATRTLETMTGGINLNDGDVGITPEAGIEILQQRVSETQTHLDALEDLARHNDMPPGTLRAQ
Ga0209219_110338813300027565Forest SoilEDMRSGIDLYDGDVGITPEAGLEILQRRVSETQMDLDALEDLARRNDMSPGTLRGQ
Ga0209736_103214233300027660Forest SoilAIEAARSLETMTGGINLNDGDIGITPEAGIEILQQRVSETQTQLDALEDLARRNDMPPGTLRGQ
Ga0209588_115934623300027671Vadose Zone SoilLEDAQSLRKTTGGINLDEGDIGITPQAGIEILQQRVNETQTELGALEDLARRNDIPPGTLRGQ
Ga0209011_101713533300027678Forest SoilEDTRPGIDLNDGDIGITPEAGLEVLQRRVNETQTELDALEDLARRNDMSPGTLRGQ
Ga0209701_1000668773300027862Vadose Zone SoilTGGGINFDEGDIAITPEAGVEILQQRAKETQTELDALDDLARRNDIPPGMVRGQ
Ga0209488_1082455913300027903Vadose Zone SoilQALDDVRSLKTMTSGINLDGGDIGITPEAGIEILQRRVYEIQSELDDLEDLARHNDIPPGTLRGQ
Ga0207428_1094058913300027907Populus RhizosphereTKTGGIDLEEENIGITPEAGLEILQQRVDEAQAELDALEDLARHNDIPPGALRGQ
Ga0209006_1144884013300027908Forest SoilIEDARSLRKTTGGVNLDEADIAITPEAGIEFLETHVNEVQAELSALEDQARRNDIPPGTLRGQ
Ga0137415_1094123013300028536Vadose Zone SoilYCQAIEDAKSLKTTTGGINLEEVDIGITLEAGIEILQRRVSETQAELDALEDLARRNDIPPGALRGQ
Ga0308309_1060613513300028906SoilAAGGIKRDEGDIGVTAEAGMEILQQRVSETQTELDALEDLARRNDVPPGTLRGQ
Ga0307476_1044349023300031715Hardwood Forest SoilTGGLNLADEESAITPEAGIEILQQRVSETQSELDDLQDLARRNDIEPGALRGQ
Ga0307474_1058371513300031718Hardwood Forest SoilEMSGGINLDEGNAGITPEAGIELLQRRVQEAQTELDELEDLARRHDIQPGALRGQ
Ga0307475_1125805613300031754Hardwood Forest SoilGGINLDEGDTGITPEAGIEILHQRVSEAQAELDALEDLARRNDIEPGTLRGQ
Ga0307478_1072146813300031823Hardwood Forest SoilETTGGVNFDEGDIAITPEAGIEILQQRVSETETDLDALEDLARRNDIPPGILRGQGALETQTDGLN
Ga0307479_1005867033300031962Hardwood Forest SoilSRQALDDARSLREMTGGINLDEGNAGITPEAGIELLQRRVQEAQTELDELEDLARRHDIQPGALRGQ
Ga0307479_1162717923300031962Hardwood Forest SoilKETTGGVNFDEGDIGITPEAGIEILQQRVSETETDLDALEDLARRNDIPPGILRGQGDLETQTDGLN
Ga0307470_1116085913300032174Hardwood Forest SoilLADARSLKNMTGGINFNEGDIGITPEAGIHILQQRVNETRTELDVLDDLARRNDIPPGVLRGQ
Ga0307471_10013820013300032180Hardwood Forest SoilAKNLKTMVGGINLEEGDIGITPEAGIEILQERVNKTQSELDALEDLARRDDIPPGTLRGQ
Ga0307471_10414132723300032180Hardwood Forest SoilTTGGMNLEEGDIAITPEAGIEVLQERANETRSELDALEDLARRNDIPPGILRNR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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