Metagenome Family F101826

Basic Information
Family ID	F101826
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	70 residues
Representative Sequence	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARSAR
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	27.45 %
% of genes from short scaffolds (< 2000 bps)	75.49 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (71.569 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.745 % of family members)
Environment Ontology (ENVO)	Unclassified (49.020 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.608 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.00% β-sheet: 0.00% Coil/Unstructured: 24.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13672	PP2C_2	30.39
PF13493	DUF4118	13.73
PF06224	HTH_42	5.88
PF00583	Acetyltransf_1	1.96
PF08448	PAS_4	0.98
PF00291	PALP	0.98
PF08534	Redoxin	0.98
PF00266	Aminotran_5	0.98
PF00890	FAD_binding_2	0.98
PF00578	AhpC-TSA	0.98
PF12704	MacB_PCD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	5.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	45.10 %
Unclassified	root	N/A	28.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	45.10 %
Unclassified	root	N/A	28.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.43 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	7.84 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.43 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	7.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.43 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	7.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.43 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	4.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.43 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_1057_length_1913_cov_9.504443	Not Available	1945	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105090947	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	713	Open in IMG/M
3300000956\|JGI10216J12902_100942625	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300000956\|JGI10216J12902_101300422	Not Available	740	Open in IMG/M
3300004114\|Ga0062593_100044187	All Organisms → cellular organisms → Bacteria	2707	Open in IMG/M
3300004114\|Ga0062593_100047733	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2637	Open in IMG/M
3300004463\|Ga0063356_100095008	All Organisms → cellular organisms → Bacteria	3210	Open in IMG/M
3300004479\|Ga0062595_101579838	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005093\|Ga0062594_100772970	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	882	Open in IMG/M
3300005328\|Ga0070676_10000531	All Organisms → cellular organisms → Bacteria	18354	Open in IMG/M
3300005330\|Ga0070690_101543674	Not Available	537	Open in IMG/M
3300005332\|Ga0066388_104962724	Not Available	676	Open in IMG/M
3300005339\|Ga0070660_100348195	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1220	Open in IMG/M
3300005340\|Ga0070689_101047210	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300005345\|Ga0070692_10051852	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2135	Open in IMG/M
3300005355\|Ga0070671_100096534	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300005355\|Ga0070671_100178226	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1799	Open in IMG/M
3300005356\|Ga0070674_100264568	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1356	Open in IMG/M
3300005364\|Ga0070673_100944453	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005367\|Ga0070667_101672743	Not Available	598	Open in IMG/M
3300005439\|Ga0070711_100276089	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1328	Open in IMG/M
3300005441\|Ga0070700_100016974	All Organisms → cellular organisms → Bacteria	4155	Open in IMG/M
3300005457\|Ga0070662_100500899	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1013	Open in IMG/M
3300005459\|Ga0068867_100401995	Not Available	1155	Open in IMG/M
3300005459\|Ga0068867_101653128	Not Available	600	Open in IMG/M
3300005535\|Ga0070684_100050785	All Organisms → cellular organisms → Bacteria	3602	Open in IMG/M
3300005545\|Ga0070695_100828662	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	743	Open in IMG/M
3300005614\|Ga0068856_100186903	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300005616\|Ga0068852_101397143	Not Available	722	Open in IMG/M
3300005718\|Ga0068866_10143973	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1372	Open in IMG/M
3300006169\|Ga0082029_1454419	Not Available	519	Open in IMG/M
3300006844\|Ga0075428_100075444	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3682	Open in IMG/M
3300006844\|Ga0075428_101069577	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	853	Open in IMG/M
3300006845\|Ga0075421_100191321	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2538	Open in IMG/M
3300006854\|Ga0075425_100457327	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1470	Open in IMG/M
3300006881\|Ga0068865_101043142	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	718	Open in IMG/M
3300006904\|Ga0075424_100019304	All Organisms → cellular organisms → Bacteria	6956	Open in IMG/M
3300006914\|Ga0075436_101056189	Not Available	611	Open in IMG/M
3300009094\|Ga0111539_10141752	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2814	Open in IMG/M
3300009094\|Ga0111539_10325292	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1789	Open in IMG/M
3300009101\|Ga0105247_11401295	Not Available	566	Open in IMG/M
3300009147\|Ga0114129_10455979	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1676	Open in IMG/M
3300009148\|Ga0105243_11676736	Not Available	664	Open in IMG/M
3300009156\|Ga0111538_10773542	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1216	Open in IMG/M
3300009177\|Ga0105248_11170162	Not Available	869	Open in IMG/M
3300009177\|Ga0105248_11531678	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	755	Open in IMG/M
3300009551\|Ga0105238_11686665	Not Available	665	Open in IMG/M
3300009553\|Ga0105249_10020083	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5967	Open in IMG/M
3300010375\|Ga0105239_10031926	All Organisms → cellular organisms → Bacteria	5787	Open in IMG/M
3300010397\|Ga0134124_10171387	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1951	Open in IMG/M
3300010399\|Ga0134127_12746734	Not Available	572	Open in IMG/M
3300011119\|Ga0105246_10321576	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300012511\|Ga0157332_1010282	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	927	Open in IMG/M
3300012514\|Ga0157330_1069613	Not Available	541	Open in IMG/M
3300012896\|Ga0157303_10027161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1022	Open in IMG/M
3300012951\|Ga0164300_10371377	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	775	Open in IMG/M
3300012957\|Ga0164303_10108799	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300012958\|Ga0164299_10501479	Not Available	807	Open in IMG/M
3300012971\|Ga0126369_10795146	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1028	Open in IMG/M
3300012985\|Ga0164308_10348867	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1193	Open in IMG/M
3300012986\|Ga0164304_10145833	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1484	Open in IMG/M
3300013102\|Ga0157371_10935434	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300013296\|Ga0157374_10392939	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300013307\|Ga0157372_11095540	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300014968\|Ga0157379_10608673	Not Available	1020	Open in IMG/M
3300015371\|Ga0132258_10032675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	11654	Open in IMG/M
3300015372\|Ga0132256_100986905	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300021445\|Ga0182009_10072585	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1514	Open in IMG/M
3300022880\|Ga0247792_1022237	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1064	Open in IMG/M
3300025271\|Ga0207666_1025421	Not Available	888	Open in IMG/M
3300025315\|Ga0207697_10002756	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	8968	Open in IMG/M
3300025321\|Ga0207656_10029084	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300025899\|Ga0207642_10571189	Not Available	701	Open in IMG/M
3300025907\|Ga0207645_10224135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1240	Open in IMG/M
3300025926\|Ga0207659_10016761	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4774	Open in IMG/M
3300025928\|Ga0207700_11789856	Not Available	540	Open in IMG/M
3300025931\|Ga0207644_10580916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	929	Open in IMG/M
3300025933\|Ga0207706_10163196	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300025934\|Ga0207686_10242674	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1312	Open in IMG/M
3300025937\|Ga0207669_10206973	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1429	Open in IMG/M
3300025938\|Ga0207704_10696697	Not Available	841	Open in IMG/M
3300025942\|Ga0207689_11404637	Not Available	585	Open in IMG/M
3300025944\|Ga0207661_10029092	All Organisms → cellular organisms → Bacteria	4240	Open in IMG/M
3300025944\|Ga0207661_10094180	All Organisms → cellular organisms → Bacteria	2501	Open in IMG/M
3300025960\|Ga0207651_10224438	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1521	Open in IMG/M
3300025981\|Ga0207640_10728936	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300025986\|Ga0207658_11834592	Not Available	553	Open in IMG/M
3300026142\|Ga0207698_11233549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	762	Open in IMG/M
3300027907\|Ga0207428_10582858	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	807	Open in IMG/M
3300027907\|Ga0207428_10669696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300027909\|Ga0209382_11845695	Not Available	586	Open in IMG/M
3300031538\|Ga0310888_10073116	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1675	Open in IMG/M
3300031548\|Ga0307408_100039215	All Organisms → cellular organisms → Bacteria	3346	Open in IMG/M
3300031854\|Ga0310904_10006260	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4523	Open in IMG/M
3300031938\|Ga0308175_100014894	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	6005	Open in IMG/M
3300031940\|Ga0310901_10286346	Not Available	687	Open in IMG/M
3300031996\|Ga0308176_10018050	All Organisms → cellular organisms → Bacteria	5212	Open in IMG/M
3300032013\|Ga0310906_10825864	Not Available	656	Open in IMG/M
3300032075\|Ga0310890_10606754	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	847	Open in IMG/M
3300032421\|Ga0310812_10370269	Not Available	643	Open in IMG/M
3300033475\|Ga0310811_10781181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	897	Open in IMG/M
3300033550\|Ga0247829_11545188	Not Available	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.86%
Environmental	Environmental	43.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.86%
Terrestrial	Environmental → Terrestrial	43.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02845720	2140918013	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
INPhiseqgaiiFebDRAFT_1050909472	3300000364	Soil	MSRMRGVWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAXRASS
JGI10216J12902_1009426252	3300000956	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
JGI10216J12902_1013004222	3300000956	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAGRAR*
Ga0062593_1000441871	3300004114	Soil	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0062593_1000477331	3300004114	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAA
Ga0063356_1000950083	3300004463	Arabidopsis Thaliana Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0062595_1015798381	3300004479	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0062594_1007729702	3300005093	Soil	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR
Ga0070676_100005318	3300005328	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0070690_1015436741	3300005330	Switchgrass Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR*
Ga0066388_1049627241	3300005332	Tropical Forest Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARSAR*
Ga0070660_1003481952	3300005339	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0070689_1010472101	3300005340	Switchgrass Rhizosphere	PSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0070692_100518521	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESE
Ga0070671_1000965341	3300005355	Switchgrass Rhizosphere	MSRSRGLWPRMAPSIYRHMLERVENAVTLDELRALRRFCRIRLEDDGRLAELDEAIERKAMRMIAEAEAAGRASR*
Ga0070671_1001782261	3300005355	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0070674_1002645683	3300005356	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLAELDEAIERKAMRMIAEADAAGRSAR*
Ga0070673_1009444532	3300005364	Switchgrass Rhizosphere	VWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0070667_1016727431	3300005367	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR*
Ga0070711_1002760892	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGAWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAE
Ga0070700_1000169741	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVALDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR*
Ga0070662_1005008991	3300005457	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKA
Ga0068867_1004019953	3300005459	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0068867_1016531282	3300005459	Miscanthus Rhizosphere	MSRSRGLWPRMAPSIYRHMLERVDNAVTLDELRALRRFCRIRLQDDRRLAELDEAIERKAMRMIGEAEAAARSAR*
Ga0070684_1000507852	3300005535	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0070695_1008286621	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIA
Ga0068856_1001869033	3300005614	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0068852_1013971432	3300005616	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0068866_101439731	3300005718	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIA
Ga0082029_14544191	3300006169	Termite Nest	MSRSRGVWPRMGPSIYRHMLDRVQNAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAA
Ga0075428_1000754441	3300006844	Populus Rhizosphere	MTRSRGVWPRMAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0075428_1010695771	3300006844	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR*
Ga0075421_1001913211	3300006845	Populus Rhizosphere	MAPSIYRHMLERVESAVTLHELRALRRFCRIRLDNDGRLAELDEAIERKAMRMIAEAEAAGRSAR*
Ga0075425_1004573272	3300006854	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARAAR*
Ga0068865_1010431422	3300006881	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIGEAEAAARSAR*
Ga0075424_1000193045	3300006904	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRTRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0075436_1010561891	3300006914	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARASR*
Ga0111539_101417523	3300009094	Populus Rhizosphere	MAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0111539_103252922	3300009094	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR*
Ga0105247_114012951	3300009101	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR*
Ga0114129_104559792	3300009147	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAEAEAAGRSAR*
Ga0105243_116767361	3300009148	Miscanthus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAEAEAAARASR*
Ga0111538_107735422	3300009156	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRAR*
Ga0105248_111701622	3300009177	Switchgrass Rhizosphere	MAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0105248_115316781	3300009177	Switchgrass Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR*
Ga0105238_116866651	3300009551	Corn Rhizosphere	MAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0105249_100200835	3300009553	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAA
Ga0105239_100319263	3300010375	Corn Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0134124_101713871	3300010397	Terrestrial Soil	MAPSIYRHMLERVESVVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0134127_127467341	3300010399	Terrestrial Soil	MAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGR
Ga0105246_103215761	3300011119	Miscanthus Rhizosphere	QAESGGSRMGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0157332_10102821	3300012511	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARAAR*
Ga0157330_10696132	3300012514	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESQAAARPSR*
Ga0157303_100271611	3300012896	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0164300_103713771	3300012951	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAESEAAARASR*
Ga0164303_101087992	3300012957	Soil	MAPSVYRHMLRRVESAVTIEELRALRRFCRIRLENDDRLAELDEAIERKAMQLIAESEASDRSSR*
Ga0164299_105014791	3300012958	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0126369_107951462	3300012971	Tropical Forest Soil	MAPSIYRHMLERVESAVTFDDLRAIRRFCRIRLENDGRLAELDEAIESKAMRMIAESEAAARSAR*
Ga0164308_103488672	3300012985	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIG
Ga0164304_101458332	3300012986	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIGEAEAAARSAR*
Ga0157371_109354341	3300013102	Corn Rhizosphere	PRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0157374_103929392	3300013296	Miscanthus Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0157372_110955401	3300013307	Corn Rhizosphere	MAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR*
Ga0157379_106086731	3300014968	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0132258_100326758	3300015371	Arabidopsis Rhizosphere	MAPSIYRHMLERVENAATLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0132256_1009869052	3300015372	Arabidopsis Rhizosphere	MAPSIYRHMLERVENAVTLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0182009_100725852	3300021445	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR
Ga0247792_10222372	3300022880	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
Ga0207666_10254212	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	SIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
Ga0207697_100027562	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR
Ga0207656_100290843	3300025321	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR
Ga0207642_105711891	3300025899	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207645_102241351	3300025907	Miscanthus Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMI
Ga0207659_100167611	3300025926	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAE
Ga0207700_117898561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGAWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRM
Ga0207644_105809161	3300025931	Switchgrass Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR
Ga0207706_101631961	3300025933	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFFRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207686_102426742	3300025934	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAEADAAGRSAR
Ga0207669_102069732	3300025937	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLAELDEAIERKAMRMIAEADAAGRSAR
Ga0207704_106966972	3300025938	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIGEAEAAARSAR
Ga0207689_114046371	3300025942	Miscanthus Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIAESEAAARASR
Ga0207661_100290922	3300025944	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR
Ga0207661_100941801	3300025944	Corn Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEGAARASR
Ga0207651_102244383	3300025960	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEA
Ga0207640_107289362	3300025981	Corn Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207658_118345921	3300025986	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR
Ga0207698_112335491	3300026142	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR
Ga0207428_105828581	3300027907	Populus Rhizosphere	MTRSRGVWPRMAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRM
Ga0207428_106696961	3300027907	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR
Ga0209382_118456952	3300027909	Populus Rhizosphere	MAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR
Ga0310888_100731161	3300031538	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAAARPSR
Ga0307408_1000392151	3300031548	Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDRRLAELDEAIERRAMRMIAEAEAAGRGR
Ga0310904_100062603	3300031854	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR
Ga0308175_1000148942	3300031938	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDDLRAIRRFCRIRLENDGRLAELDEAIEKTAMRMIAESDAAARSAR
Ga0310901_102863462	3300031940	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAASRASR
Ga0308176_100180502	3300031996	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDDLRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0310906_108258641	3300032013	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAKSEAAS
Ga0310890_106067541	3300032075	Soil	MSRSRGVWPRMAPSIYRHMLERVEGAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAAARPSR
Ga0310812_103702692	3300032421	Soil	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKA
Ga0310811_107811811	3300033475	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKA
Ga0247829_115451881	3300033550	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIADAEAAGRAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101826

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign