Metagenome Family F101819

Basic Information
Family ID	F101819
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	VAGFVDVLLRGLALCGQAIAVGGVCFALLLLRPASSEDPA
Number of Associated Samples	94
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.00 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (96.078 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.078 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.47% β-sheet: 0.00% Coil/Unstructured: 48.53%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01066	CDP-OH_P_transf	53.92
PF02894	GFO_IDH_MocA_C	3.92
PF00202	Aminotran_3	2.94
PF01568	Molydop_binding	0.98
PF07676	PD40	0.98
PF05425	CopD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	53.92
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	53.92
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	53.92
COG0673	Predicted dehydrogenase	General function prediction only [R]	3.92
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.08 %
Unclassified	root	N/A	3.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.08 %
Unclassified	root	N/A	3.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.08 %
Unclassified	root	N/A	3.92 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	66.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	3.92 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	66.67 %
Unclassified	root	N/A	3.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	63.73 %
Unclassified	root	N/A	3.92 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	2.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	42.16 %
Unclassified	root	N/A	3.92 %
Candidatus Methylomirabilis	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis	2.94 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.98 %
Rhodovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	42.16 %
Unclassified	root	N/A	3.92 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	2.94 %
Tistlia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	0.98 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	42.16 %
Unclassified	root	N/A	3.92 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	2.94 %
Tistlia consotensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis	0.98 %
Syntrophobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	42.16 %
Unclassified	root	N/A	3.92 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	2.94 %
Syntrophobacter fumaroxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	0.98 %
Tistlia consotensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002560\|JGI25383J37093_10059525	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300004268\|Ga0066398_10163414	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005174\|Ga0066680_10896630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300005179\|Ga0066684_10628581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	722	Open in IMG/M
3300005332\|Ga0066388_103853899	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	765	Open in IMG/M
3300005445\|Ga0070708_100089967	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
3300005447\|Ga0066689_10654199	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300005451\|Ga0066681_10379404	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300005518\|Ga0070699_100089885	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300005558\|Ga0066698_10710549	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005719\|Ga0068861_101978142	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300005764\|Ga0066903_100228593	All Organisms → cellular organisms → Bacteria	2833	Open in IMG/M
3300005843\|Ga0068860_102791729	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300006031\|Ga0066651_10554529	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300006032\|Ga0066696_10375541	All Organisms → cellular organisms → Bacteria → Proteobacteria	927	Open in IMG/M
3300006169\|Ga0082029_1709659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	657	Open in IMG/M
3300006791\|Ga0066653_10030495	All Organisms → cellular organisms → Bacteria → Proteobacteria	2119	Open in IMG/M
3300006871\|Ga0075434_100267291	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300006904\|Ga0075424_100294779	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300006969\|Ga0075419_10449155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	889	Open in IMG/M
3300007004\|Ga0079218_10433999	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300007076\|Ga0075435_100215142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1631	Open in IMG/M
3300007255\|Ga0099791_10299370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300009012\|Ga0066710_103527591	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	591	Open in IMG/M
3300009090\|Ga0099827_11206088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	658	Open in IMG/M
3300009162\|Ga0075423_10849032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	967	Open in IMG/M
3300009792\|Ga0126374_11901109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	500	Open in IMG/M
3300010048\|Ga0126373_12661233	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300010304\|Ga0134088_10014545	All Organisms → cellular organisms → Bacteria	3410	Open in IMG/M
3300010304\|Ga0134088_10625155	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	537	Open in IMG/M
3300010320\|Ga0134109_10044072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1460	Open in IMG/M
3300010333\|Ga0134080_10012704	All Organisms → cellular organisms → Bacteria	3025	Open in IMG/M
3300010335\|Ga0134063_10197374	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	946	Open in IMG/M
3300010360\|Ga0126372_10645659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1024	Open in IMG/M
3300010360\|Ga0126372_11509145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	708	Open in IMG/M
3300010362\|Ga0126377_12730995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300010398\|Ga0126383_11286912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	821	Open in IMG/M
3300010400\|Ga0134122_10904832	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	854	Open in IMG/M
3300011270\|Ga0137391_11495697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300011436\|Ga0137458_1275787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	513	Open in IMG/M
3300012152\|Ga0137347_1096907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	528	Open in IMG/M
3300012199\|Ga0137383_11213757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300012205\|Ga0137362_11679712	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	522	Open in IMG/M
3300012353\|Ga0137367_10243451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1294	Open in IMG/M
3300012353\|Ga0137367_10478643	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300012357\|Ga0137384_11431963	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	539	Open in IMG/M
3300012362\|Ga0137361_11088648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	720	Open in IMG/M
3300012685\|Ga0137397_10109881	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300012918\|Ga0137396_11028335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300012923\|Ga0137359_10717730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	870	Open in IMG/M
3300012930\|Ga0137407_10914753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	830	Open in IMG/M
3300012944\|Ga0137410_11216191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	649	Open in IMG/M
3300012948\|Ga0126375_10415655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	977	Open in IMG/M
3300012971\|Ga0126369_13170220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300014884\|Ga0180104_1003877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	3197	Open in IMG/M
3300014969\|Ga0157376_12768530	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300015054\|Ga0137420_1005506	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	2311	Open in IMG/M
3300015054\|Ga0137420_1153142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300015372\|Ga0132256_101310944	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300017659\|Ga0134083_10247815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	745	Open in IMG/M
3300017974\|Ga0187777_11369421	Not Available	521	Open in IMG/M
3300018058\|Ga0187766_10112955	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	1658	Open in IMG/M
3300020004\|Ga0193755_1224743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300020170\|Ga0179594_10094357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1069	Open in IMG/M
3300025569\|Ga0210073_1069421	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300025972\|Ga0207668_11678573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	574	Open in IMG/M
3300026296\|Ga0209235_1251878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300026297\|Ga0209237_1014848	All Organisms → cellular organisms → Bacteria	4577	Open in IMG/M
3300026309\|Ga0209055_1031762	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2407	Open in IMG/M
3300026315\|Ga0209686_1066018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1294	Open in IMG/M
3300026324\|Ga0209470_1091921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis	1373	Open in IMG/M
3300026324\|Ga0209470_1381412	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300026327\|Ga0209266_1032343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2756	Open in IMG/M
3300026328\|Ga0209802_1282751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300026359\|Ga0257163_1060602	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	606	Open in IMG/M
3300026376\|Ga0257167_1005038	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300026538\|Ga0209056_10170259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1636	Open in IMG/M
3300027490\|Ga0209899_1013330	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300027874\|Ga0209465_10609873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300027880\|Ga0209481_10245917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	900	Open in IMG/M
3300028381\|Ga0268264_10832298	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	924	Open in IMG/M
3300031198\|Ga0307500_10275687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300031679\|Ga0318561_10777299	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300031720\|Ga0307469_10372765	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1207	Open in IMG/M
3300031740\|Ga0307468_102013281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300031820\|Ga0307473_10836451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300031820\|Ga0307473_10962740	Not Available	621	Open in IMG/M
3300031858\|Ga0310892_10564335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	766	Open in IMG/M
3300031858\|Ga0310892_11177890	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300031910\|Ga0306923_10579410	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1262	Open in IMG/M
3300032054\|Ga0318570_10151739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1037	Open in IMG/M
3300032067\|Ga0318524_10015992	All Organisms → cellular organisms → Bacteria → Proteobacteria	3272	Open in IMG/M
3300032067\|Ga0318524_10537848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300032075\|Ga0310890_10200156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1369	Open in IMG/M
3300032174\|Ga0307470_11765628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	523	Open in IMG/M
3300032180\|Ga0307471_100497487	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1366	Open in IMG/M
3300032205\|Ga0307472_100782138	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300033004\|Ga0335084_10150254	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	2423	Open in IMG/M
3300034114\|Ga0364938_033751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300034164\|Ga0364940_0018641	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.24%
Host-Associated	Host-Associated	11.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Plants	Host-Associated → Plants	11.76%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.82%
Sediment	Environmental → Aquatic → Sediment	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Floodplain	Environmental → Terrestrial → Floodplain	1.96%
Marine	Environmental → Aquatic → Marine	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.57%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012152	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034114	Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101819

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_100595251	3300002560	Grasslands Soil	VAGFVDVLLRGLALCGQAVAIGGVFFAALLLRPASREDPAAR
Ga0066398_101634141	3300004268	Tropical Forest Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRPGSSEAARQ
Ga0066680_108966301	3300005174	Soil	VAGFVDVLLRGLALCGQAIAIGGVVFAALLLRPAVRQDAAVRPRL
Ga0066684_106285812	3300005179	Soil	VTGFVDVLLRGLALCGQAVAVGGVVFGWALLRPALARRPV
Ga0066388_1038538992	3300005332	Tropical Forest Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRR
Ga0070708_1000899674	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VAGFADVLLRGLALCGQAAAIGGVLFALVVLKPALRPRPE
Ga0066689_106541991	3300005447	Soil	VAGFADVLLRGLALCGQAAAIGGVLFALVVLKPALRPRPELS
Ga0066681_103794042	3300005451	Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPATREDPAS
Ga0070699_1000898851	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VAEFVDVLLRGLALCGQAVAVGGVVFAALLLRPRAREAPAA
Ga0066698_107105492	3300005558	Soil	VAGFVDVLLRGLALCGQAIAVGGVCFALLLLRPASSEDPA
Ga0066699_111873892	3300005561	Soil	VAAFADVLLRGLALSGQVVAIGGVLFALLVLGPSRS
Ga0068861_1019781422	3300005719	Switchgrass Rhizosphere	VAGFVDVLLRGLALCGQGVAIGGVFFALLLLRPSLSDGAPARRRLTKSLVLT
Ga0066903_1002285934	3300005764	Tropical Forest Soil	VAGFLDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRRLVRSLVL
Ga0068860_1027917291	3300005843	Switchgrass Rhizosphere	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAGARRRLVGSLMLTAAGALA
Ga0066651_105545291	3300006031	Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPATR
Ga0066696_103755411	3300006032	Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPATREDP
Ga0082029_17096591	3300006169	Termite Nest	MAAFLDVILRGLALAGQAVAIGGVLFALLVVRENTRRV
Ga0066653_100304953	3300006791	Soil	VAGLVDVVLRGLALCGQAVAVGGVLFALLVLRPAVRAR
Ga0075434_1002672913	3300006871	Populus Rhizosphere	VAGFVDVLLRGLALCGQAVAIGGVLFAILLLRPALA
Ga0075424_1002947793	3300006904	Populus Rhizosphere	VAGFVDVLLRGLALCGQAVAIGGVLFAILLLRPAL
Ga0075419_104491552	3300006969	Populus Rhizosphere	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARR
Ga0079218_104339991	3300007004	Agricultural Soil	VAGFVDVLLRGLILAGQAMAVGGIVFLLWVIRPAS
Ga0075435_1002151421	3300007076	Populus Rhizosphere	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRRLVR
Ga0099791_102993702	3300007255	Vadose Zone Soil	VAGFVDVLLRGLALCGQAVAVGGVLFAVLLLRPEVAAHPALAPRLT
Ga0066710_1035275911	3300009012	Grasslands Soil	VAGFLDVILRGLALCGQAAAIGGVCFALLVLRPAARQRPEL
Ga0099827_112060882	3300009090	Vadose Zone Soil	MAGFLDVILRGLALCGQAAAIGGVCFALLVLRPAVRQRPE
Ga0075423_108490321	3300009162	Populus Rhizosphere	MAAFVDVLLRGLALTGQAIAVGGVVFALVVLRSAEEATARQPWRRL
Ga0126374_119011091	3300009792	Tropical Forest Soil	LIGFLDILLRGLALCGQGLAVGGVFFGLLILRPAARA
Ga0126373_126612331	3300010048	Tropical Forest Soil	VIGFLDVILRGLALCGQSMAMGGVLFALCVLRAATEDEAA
Ga0134088_100145454	3300010304	Grasslands Soil	VAGFVDVLLRGVALCGQAMAIGGVLFALLVLRPAVRAR
Ga0134088_106251552	3300010304	Grasslands Soil	VAGFLDVILRGLALCGQAAAIGGVCFALLVLRPAARQRPELTGL
Ga0134109_100440723	3300010320	Grasslands Soil	VAGFVDVLLRGLALCGQAVAVGGVLFAVLLLRPEVAARPT
Ga0134080_100127044	3300010333	Grasslands Soil	VAGFVDVLLRGVALCGQAMAIGGVLFALLVLRPAVRA
Ga0134063_101973742	3300010335	Grasslands Soil	VAGFLDVILRGLALCGQAAAIGGVCFALLVLRPAARQRPELAGLV
Ga0126372_106456592	3300010360	Tropical Forest Soil	VAGFIDVLLRGLALCGQAAAIGGVLFALVVLRPALR
Ga0126372_115091451	3300010360	Tropical Forest Soil	MAAFVDVLLRGMALSGQAIAIGGVVFALIVLGPEAGSARSAW
Ga0126377_127309951	3300010362	Tropical Forest Soil	VAGFVDVLLRGLALCGQAVAVGGVLFALLLLRPALGDGEPAR
Ga0126383_112869122	3300010398	Tropical Forest Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDA
Ga0134122_109048321	3300010400	Terrestrial Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSE
Ga0137391_114956972	3300011270	Vadose Zone Soil	VAGFVDVLLRGLALCGQAVAVGGVVFGLWLLLPALAARP
Ga0137458_12757871	3300011436	Soil	VAGFVDVLLRGLALCGQAAAIGGVLFALVVLKPAARR
Ga0137347_10969071	3300012152	Soil	VAGFLDVLLRGLALSGQAAAIGGVLFGLIVLRPVVRRRPE
Ga0137383_112137571	3300012199	Vadose Zone Soil	VAGFVDVLLRGLALCGQAVAIGGVLFAMLLLRPTLR
Ga0137362_116797121	3300012205	Vadose Zone Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPAIREDPASGARER
Ga0137367_102434511	3300012353	Vadose Zone Soil	VAGFVDVLLRGLALCGQAVAVGGVFFAALLLGPAAR
Ga0137367_104786431	3300012353	Vadose Zone Soil	LTAVAGFLDVLLRGLALCGQAVAMGGVFFAVLVLRPVSREEPAW
Ga0137384_114319632	3300012357	Vadose Zone Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPASREDPASGARERR
Ga0137361_110886481	3300012362	Vadose Zone Soil	VAGFVDVLLRGVALCGQAMAIGGVLFALLVLRPAVRARPALASP
Ga0137397_101098813	3300012685	Vadose Zone Soil	VAGFADVLLRGLALCGQAAAIGGVLFALVVLKPALRP
Ga0137396_110283351	3300012918	Vadose Zone Soil	VRGSAPDTTVAGFVDVLLRGFALCGQAVAVGGVIFAALLLRPEVVARPA
Ga0137359_107177302	3300012923	Vadose Zone Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPAIREDPALAARERR
Ga0137407_109147532	3300012930	Vadose Zone Soil	VAGFVDVLLRGLALCGQAVAVGGVLFAVLLLRPEAAARPALA
Ga0137410_112161911	3300012944	Vadose Zone Soil	VAGFVDVLLRGLALCGQAIAVGGVLFAVLLLRPEVAA
Ga0126375_104156551	3300012948	Tropical Forest Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRPGSSEETARQRL
Ga0126369_131702202	3300012971	Tropical Forest Soil	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRRLVRSLVL
Ga0180104_10038774	3300014884	Soil	VAGFVDVLLRGLALCGQAAAIGGVLFALIVLRPALRQRPELAPL
Ga0157376_127685302	3300014969	Miscanthus Rhizosphere	VAGFVDVLLRGLALCGQAVAIGGVLFALLLLRPALGEGGAARARLVR
Ga0137420_10055063	3300015054	Vadose Zone Soil	VAGFVDVLLRGLALCGQAIALGGVVFALLLLRPVLPESGPA
Ga0137420_11531422	3300015054	Vadose Zone Soil	VAGFVDVLLRGLALCGQAIALGGVVFALLLLRPVLPESGPARSRLTRS
Ga0132256_1013109441	3300015372	Arabidopsis Rhizosphere	VAGFVDVLLRGLALCGQGVAIGGVFFALLLLRPTLADGAPAHRR
Ga0134112_103544011	3300017656	Grasslands Soil	VTGFIDVLLRGMALCGQAAAIGGVLFALIVLKPSLRDRPELSP
Ga0134083_102478151	3300017659	Grasslands Soil	VAGFVDVLLRGLALCGQAIAVGGVCFALLLRRPASSEDPAARR
Ga0187777_113694211	3300017974	Tropical Peatland	VTGFLDVVLRGLALCGQAMAMGGVLFALWVLRAATEDRPPMGPRI
Ga0187766_101129553	3300018058	Tropical Peatland	VAGFADVLLRGLALCGQAAAIGGVLFALFVLRPALRQRP
Ga0193755_12247432	3300020004	Soil	VAGFADVLLRGLALCGQAAAIGGVLFALVVLKPALRPR
Ga0179594_100943572	3300020170	Vadose Zone Soil	VAGFVDVLLRGLALCGQAIAVGGVCFALLLLRRPAS
Ga0210073_10694211	3300025569	Natural And Restored Wetlands	MTGFLDVLLRGVALSGQAIVVGGLFFIVLVLRPVAREDPAWAGR
Ga0207668_116785731	3300025972	Switchgrass Rhizosphere	VAGFVDVLLRGLALCGQAVAIGGVLFALLLLRPNLG
Ga0209235_12518781	3300026296	Grasslands Soil	VAGFVDVLLRGLALCGQAVAIGGVFFAALLLRPASREDPAARSRLARSLALTAGGA
Ga0209237_10148482	3300026297	Grasslands Soil	VAGFVDVLLRGLALCGQAIAIGGVVFAALLLRPAVRQDAAVRAW
Ga0209055_10317621	3300026309	Soil	VAGFVDVLLRGLALCGQAVVIGGVLFAMLLLRPTLPEGGPARARLVRSLAFTAIGAAVV
Ga0209686_10660182	3300026315	Soil	VAGFVDVLLRGLALCGQAVAIGGVLFAMLLLRPTLREGGPAC
Ga0209470_10919211	3300026324	Soil	VAGFVDVLLRGLALCGQAVAIGGVLFALLLLRPALPEGGPARSRLARSLALT
Ga0209470_13814121	3300026324	Soil	VAEFVDVLLRGLALCGQAIAVGGVFFVALLLRPASREDPAARSRL
Ga0209266_10323434	3300026327	Soil	VAGFVDVLLRGLALCGQALAVGGVCFALLLLLRPASS
Ga0209802_12827511	3300026328	Soil	VAGFVDVLLRGLALCGQAIAIGGVVFAALLLRPAVRQDAAVRPRLVKSLALTA
Ga0257163_10606021	3300026359	Soil	VAGFLDVILRGLALCGQAAAIGGVCFAILVLRPAVRQRPEL
Ga0257167_10050381	3300026376	Soil	VAGFVDVLLRGLALCGQAVAIGGVFFAALLLRPASRE
Ga0209056_101702593	3300026538	Soil	VAGFLDVLLRGLALCGQAIAMGGIFFAVLVLRPATREDPALAAR
Ga0209899_10133301	3300027490	Groundwater Sand	VTGFVDVLLRGLALCGQAVAVGGVFFAVLLLRPASREDPAARSRLARSLAL
Ga0209465_106098732	3300027874	Tropical Forest Soil	VAGFVDVLLRGFALCGQSIAVGGVCFALLLLRPGSGEAAARQRLVRSLVLTAAGAIV
Ga0209481_102459171	3300027880	Populus Rhizosphere	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRRL
Ga0268264_108322981	3300028381	Switchgrass Rhizosphere	VAGFVDVLLRGLALCGQSIAVGGVCFALLLLRAASSEDAAARRRLVRSLM
Ga0307500_102756871	3300031198	Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPTLGEGGAA
Ga0318561_107772992	3300031679	Soil	VAGFVDVLLRGLALCGQSVAIGGVLFAIFLLRGPLADGPAARARLTRSLWL
Ga0307469_103727652	3300031720	Hardwood Forest Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPAFGEGGAARARL
Ga0307468_1020132811	3300031740	Hardwood Forest Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPALGEGGAA
Ga0307473_108364512	3300031820	Hardwood Forest Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPAFGEGGAAR
Ga0307473_109627401	3300031820	Hardwood Forest Soil	VAGFLDVVLRGLALAGQAMGMGGVLFALYVLRAATADGRAEE
Ga0310892_105643351	3300031858	Soil	VAAFADVILRGLALTGQAVAIGGILFALLVLRSRPDD
Ga0310892_111778902	3300031858	Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPALGEGGGARARLMRSLWL
Ga0306923_105794102	3300031910	Soil	VAGFVDVLLRGLALCGQSVAIGGVLFALLLRPGPLADGPAARARLIR
Ga0318570_101517391	3300032054	Soil	VAGFVDVLLRGLALCGQAVTVGGVFFALLLLRPALGDGAAARTRLSRSLALTAI
Ga0318524_100159924	3300032067	Soil	VAGFVDVLLRGLALCGQAVTVGGVFFALLLLRPALGDGAAART
Ga0318524_105378481	3300032067	Soil	VAGFVDVLLRGLALCGQSVAIGGVLFALLLRRGPLA
Ga0310890_102001562	3300032075	Soil	VAGFVDVLLRGLALCGQAIAIGGVLFALLLLRPALGEGG
Ga0307470_117656281	3300032174	Hardwood Forest Soil	VAGFIDVLLRGLALTGQAVAIGGVVFVLVVLRARQDDSGV
Ga0307471_1004974871	3300032180	Hardwood Forest Soil	VAEFVDVLLRGLALCGQAVAVGGVVFAALLLRPRAREAPAAR
Ga0307472_1007821381	3300032205	Hardwood Forest Soil	VAGFLDILLRGIALCGRAVAIGGIFFAVLVLRPTLSAR
Ga0335084_101502543	3300033004	Soil	MAGFLDVLLRGLALAGQAVALGGILFAVLVLRPAARQDPS
Ga0364938_033751_702_839	3300034114	Sediment	MAGFVDVLLRGLALCGQTVSVGGVFFAALLLRPASREDPAARSGLA
Ga0364940_0018641_3_146	3300034164	Sediment	MAGFVDVLLRGLALCGQVVAVGGVFFAALLLRPASREDPAARSRLARS

Hidden Markov Model


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