Metagenome / Metatranscriptome Family F101800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101800
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	82 residues
Representative Sequence	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK
Number of Associated Samples	65
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.73 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	93.14 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.961 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (38.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.078 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 52.44% Coil/Unstructured: 47.56%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04266	ASCH	4.90
PF04392	ABC_sub_bind	2.94
PF07238	PilZ	1.96
PF02586	SRAP	1.96
PF00072	Response_reg	0.98
PF00589	Phage_integrase	0.98
PF00313	CSD	0.98
PF01638	HxlR	0.98
PF12680	SnoaL_2	0.98
PF00126	HTH_1	0.98
PF07719	TPR_2	0.98
PF02129	Peptidase_S15	0.98
PF05974	DUF892	0.98
PF00563	EAL	0.98
PF00753	Lactamase_B	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	General function prediction only [R]	4.90
COG3097	Uncharacterized conserved protein YqfB, UPF0267 family	Function unknown [S]	4.90
COG4405	Predicted RNA-binding protein YhfF, contains PUA-like ASCH domain	General function prediction only [R]	4.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.94
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.98
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.98
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.98
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.98
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.25 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31.37 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	27.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.67 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.98 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.98 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.98 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	0.98 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.98 %
Bradyrhizobium sp. S69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. S69	0.98 %
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	0.98 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	0.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10243666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1158	Open in IMG/M
3300005332\|Ga0066388_107301098	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300006047\|Ga0075024_100157528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300006047\|Ga0075024_100410725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	691	Open in IMG/M
3300006050\|Ga0075028_100037017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2276	Open in IMG/M
3300006050\|Ga0075028_100088510	Not Available	1560	Open in IMG/M
3300006050\|Ga0075028_100746182	Not Available	593	Open in IMG/M
3300006052\|Ga0075029_100056806	Not Available	2277	Open in IMG/M
3300006052\|Ga0075029_100082861	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300006057\|Ga0075026_100565132	Not Available	664	Open in IMG/M
3300006059\|Ga0075017_100340277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1115	Open in IMG/M
3300006059\|Ga0075017_100396324	Not Available	1035	Open in IMG/M
3300006059\|Ga0075017_100426816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	997	Open in IMG/M
3300006059\|Ga0075017_100604658	Not Available	838	Open in IMG/M
3300006059\|Ga0075017_100707969	Not Available	775	Open in IMG/M
3300006059\|Ga0075017_100822683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	718	Open in IMG/M
3300006086\|Ga0075019_10246004	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300006102\|Ga0075015_100100625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1450	Open in IMG/M
3300006102\|Ga0075015_100107308	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300006102\|Ga0075015_100618505	Not Available	635	Open in IMG/M
3300006102\|Ga0075015_101040945	Not Available	503	Open in IMG/M
3300006162\|Ga0075030_100800404	Not Available	745	Open in IMG/M
3300006162\|Ga0075030_100991866	Not Available	661	Open in IMG/M
3300006172\|Ga0075018_10403480	Not Available	696	Open in IMG/M
3300006172\|Ga0075018_10838977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	507	Open in IMG/M
3300006174\|Ga0075014_100100443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1347	Open in IMG/M
3300006174\|Ga0075014_100963607	Not Available	514	Open in IMG/M
3300006354\|Ga0075021_10322692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. S69	960	Open in IMG/M
3300006354\|Ga0075021_10329761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	949	Open in IMG/M
3300006354\|Ga0075021_10370776	Not Available	894	Open in IMG/M
3300010373\|Ga0134128_12496237	Not Available	570	Open in IMG/M
3300010397\|Ga0134124_11534994	Not Available	695	Open in IMG/M
3300012177\|Ga0153943_1120957	Not Available	565	Open in IMG/M
3300012181\|Ga0153922_1132872	Not Available	577	Open in IMG/M
3300014968\|Ga0157379_11797967	Not Available	602	Open in IMG/M
3300015371\|Ga0132258_11515437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1693	Open in IMG/M
3300015372\|Ga0132256_100867451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1019	Open in IMG/M
3300015374\|Ga0132255_104100460	Not Available	618	Open in IMG/M
3300017937\|Ga0187809_10356378	Not Available	549	Open in IMG/M
3300017947\|Ga0187785_10039094	Not Available	1744	Open in IMG/M
3300017959\|Ga0187779_10105179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1704	Open in IMG/M
3300017959\|Ga0187779_10764842	Not Available	657	Open in IMG/M
3300017974\|Ga0187777_10353292	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017974\|Ga0187777_10607876	Not Available	771	Open in IMG/M
3300017994\|Ga0187822_10067873	Not Available	1035	Open in IMG/M
3300017999\|Ga0187767_10284905	Not Available	557	Open in IMG/M
3300018088\|Ga0187771_11408754	Not Available	591	Open in IMG/M
3300020579\|Ga0210407_10094072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2271	Open in IMG/M
3300020579\|Ga0210407_10133751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1903	Open in IMG/M
3300020579\|Ga0210407_10326475	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300020579\|Ga0210407_10639696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300020581\|Ga0210399_10310798	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300020582\|Ga0210395_10255075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1318	Open in IMG/M
3300020583\|Ga0210401_11269718	Not Available	595	Open in IMG/M
3300021168\|Ga0210406_10304695	Not Available	1295	Open in IMG/M
3300021168\|Ga0210406_10625814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	837	Open in IMG/M
3300021170\|Ga0210400_10565467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300021171\|Ga0210405_10058841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3034	Open in IMG/M
3300021171\|Ga0210405_10550171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	902	Open in IMG/M
3300021178\|Ga0210408_10021062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5214	Open in IMG/M
3300021178\|Ga0210408_10230455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1475	Open in IMG/M
3300021178\|Ga0210408_10347546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1182	Open in IMG/M
3300021178\|Ga0210408_11380975	Not Available	531	Open in IMG/M
3300021401\|Ga0210393_10997219	Not Available	678	Open in IMG/M
3300021402\|Ga0210385_10387213	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300021403\|Ga0210397_10533072	Not Available	892	Open in IMG/M
3300021404\|Ga0210389_11267737	Not Available	565	Open in IMG/M
3300021407\|Ga0210383_10609371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	941	Open in IMG/M
3300021407\|Ga0210383_11411829	Not Available	579	Open in IMG/M
3300021420\|Ga0210394_10327803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1344	Open in IMG/M
3300021474\|Ga0210390_10258984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1474	Open in IMG/M
3300021474\|Ga0210390_10354889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1241	Open in IMG/M
3300021474\|Ga0210390_11595533	Not Available	514	Open in IMG/M
3300021475\|Ga0210392_10389258	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300021475\|Ga0210392_10522249	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300021477\|Ga0210398_10282398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1354	Open in IMG/M
3300021479\|Ga0210410_10548134	Not Available	1030	Open in IMG/M
3300021479\|Ga0210410_10922293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	761	Open in IMG/M
3300021559\|Ga0210409_10165786	All Organisms → cellular organisms → Bacteria → Proteobacteria	2021	Open in IMG/M
3300025944\|Ga0207661_11655006	Not Available	585	Open in IMG/M
3300027591\|Ga0209733_1054764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1052	Open in IMG/M
3300027674\|Ga0209118_1084375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	907	Open in IMG/M
3300027894\|Ga0209068_10106516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1485	Open in IMG/M
3300027894\|Ga0209068_10210616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1071	Open in IMG/M
3300027894\|Ga0209068_10277358	Not Available	937	Open in IMG/M
3300027896\|Ga0209777_10388229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1054	Open in IMG/M
3300027898\|Ga0209067_10164324	Not Available	1182	Open in IMG/M
3300027898\|Ga0209067_10771648	Not Available	560	Open in IMG/M
3300027910\|Ga0209583_10463363	Not Available	618	Open in IMG/M
3300027911\|Ga0209698_10017210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6980	Open in IMG/M
3300027911\|Ga0209698_10290370	Not Available	1297	Open in IMG/M
3300027915\|Ga0209069_10485034	Not Available	693	Open in IMG/M
3300028047\|Ga0209526_10135533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1727	Open in IMG/M
3300029636\|Ga0222749_10293219	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300031090\|Ga0265760_10186786	Not Available	695	Open in IMG/M
3300031715\|Ga0307476_10524767	Not Available	878	Open in IMG/M
3300031718\|Ga0307474_10486482	Not Available	967	Open in IMG/M
3300031718\|Ga0307474_11441909	Not Available	542	Open in IMG/M
3300031754\|Ga0307475_11402676	Not Available	538	Open in IMG/M
3300031823\|Ga0307478_11533077	Not Available	551	Open in IMG/M
3300033480\|Ga0316620_12366978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	528	Open in IMG/M
3300033513\|Ga0316628_104190457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.90%
Aquatic	Environmental → Aquatic	39.22%
Plants	Host-Associated → Plants	3.92%
Fungi	Host-Associated → Fungi	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.90%
Sediment	Environmental → Aquatic → Sediment	36.27%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Mycelium	Host-Associated → Fungi → Mycelium	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	36.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.82%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	36.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	36.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.35%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102436662	3300001593	Forest Soil	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0066388_1073010982	3300005332	Tropical Forest Soil	MTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFKGMIQGHLNYMPVTYHSRGVYRSIIDGTKVRVKT
Ga0075024_1001575281	3300006047	Watersheds	MTDQPDLWKEGQGILLECEGEKVQAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKALPRGRRT*
Ga0075024_1004107251	3300006047	Watersheds	MTDQPDLWKEGQGILLECDGERWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075028_1000370171	3300006050	Watersheds	MIDQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFNGTIRGHLNYMPVIYEGNGIYRSIIDGTEARLRPLPKEILK*
Ga0075028_1000885102	3300006050	Watersheds	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGASLMIGFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075028_1007461822	3300006050	Watersheds	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIINGTEVRVKALPRGRRT*
Ga0075029_1000568066	3300006052	Watersheds	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGASLMIGFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPMPKDILK*
Ga0075029_1000828613	3300006052	Watersheds	VTGQPDLSKVGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075026_1005651322	3300006057	Watersheds	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPASSSQRGPDR*
Ga0075017_1003402771	3300006059	Watersheds	MIDQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFSGTIHGHRNYMPVTYDGKGIYRSIIDGTEARVKPLPKDIFK*
Ga0075017_1003963242	3300006059	Watersheds	VTDQPDLWKEGQGILLECDGEKWVAEIVMTSKNGASLMIGFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLTFSND*
Ga0075017_1004268162	3300006059	Watersheds	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA*
Ga0075017_1006046582	3300006059	Watersheds	MSRVMEIRSAHRKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFDGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075017_1007079692	3300006059	Watersheds	MTDQPDLWKEGQGILLECDGERWLAEIVMTSKNGISLMIGFNGTIHGHLNYMPVMYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075017_1008226832	3300006059	Watersheds	DQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFSGTIHGHLNYMPVMYDGKGIYRSIIDGTEARVKPLPKDIFK*
Ga0075019_102460044	3300006086	Watersheds	MIDQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFSGTIHGHRNYMPVTYDGKGIYRSIIDGTEARVKPLLPAAQALL*
Ga0075015_1001006252	3300006102	Watersheds	MTDQPDLWKEGQGILLECEGEKVQAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRFKALPRGRRT*
Ga0075015_1001073082	3300006102	Watersheds	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075015_1006185051	3300006102	Watersheds	MTDQPDLWKEGQGILLECEGEKFPAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRR
Ga0075015_1010409452	3300006102	Watersheds	VTDQPDLWKEGQSILLESDGERWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVMYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075030_1008004041	3300006162	Watersheds	VTGQPDLWKVGQGILLECDGEKWLAEIVMTSKNGVSLMISFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLP
Ga0075030_1009918661	3300006162	Watersheds	VTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFRGTIHGHRNYMPVTYHRNGIYRSIIDGTEVRVKPLPRGRR
Ga0075018_104034801	3300006172	Watersheds	SVTDQPDLWKEGQGILLECDGEKWLAEILMTSKNGASLMIGFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0075018_108389771	3300006172	Watersheds	MTDQPDLWKEGQGVLLECEGEKWLAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA*
Ga0075014_1001004431	3300006174	Watersheds	MIDQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFSGTIHGHRNYMPVTYDGKGIYRSIIDGTEARV
Ga0075014_1009636072	3300006174	Watersheds	MTDQPDLWKEGQGILLECEGEKFPAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA*
Ga0075021_103226922	3300006354	Watersheds	VTDQPDLWKEGQSILLECDGERWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVMYHGQGIYRSIIDGTEVRFKQLPKDIFK*
Ga0075021_103297612	3300006354	Watersheds	VTDQPDLWKEGQGILLECDGETWLAEITMTSKNGASLMISFNGTIHGHLNHMPVIYSGNGIYRSIIDGTEVRVKPL
Ga0075021_103707761	3300006354	Watersheds	MSRVMEFVRLSHCETLAILHRKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK*
Ga0134128_124962372	3300010373	Terrestrial Soil	MRPPQPQVGKRLNRQGVLLECDGQEWLAEIEMTSKNGGSLMIDFNGTIHNHLNYVPVMYHGKGVYRSIIDGTEVRIKPMPKDIFK*
Ga0134124_115349941	3300010397	Terrestrial Soil	QPQVGKRLNRQGVLLECDGQEWLAEIEMTSKNGGSLMIGFNGTIHNHLNYMPVMYHGKGIYRSIIDGTEVRIKPMPKDIFK*
Ga0153943_11209571	3300012177	Attine Ant Fungus Gardens	MTDQPDLWKEGQGILLECEGERFLAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKALPKGRLT*
Ga0153922_11328721	3300012181	Attine Ant Fungus Gardens	MTDQPDLWKEGQGILLECEGETFQAEIVMTSKNGVSLMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGGRA*
Ga0157379_117979671	3300014968	Switchgrass Rhizosphere	MTDQPHLWKEGQLVTLECDGEKWPAEIVMTSKNGASLMVAFKGTIHGHLNYMPVVYHGKGIYRSIIDGTEVRIKPMPKDIFK*
Ga0132258_115154372	3300015371	Arabidopsis Rhizosphere	MTDQPHLWKEGQRVMLECDGEKWLAEIVMTSKNGASLMIAFKGTIHGHLNYMPVVYHGKGIYRSIIDGTEVRIKPLPKDKFK*
Ga0132256_1008674512	3300015372	Arabidopsis Rhizosphere	DQPHLWKEGQRVTLECDGEKWPAEIVMTSKNGASLMIAFKGTIHGHLNYMPVVYHGKGIYRSIIDGTEVRIKPLPKDKFK*
Ga0132255_1041004602	3300015374	Arabidopsis Rhizosphere	MTDQPHLWKEGQRVTLECDGEKWPAEIVMTSKNGASLMVAFKGTIHGHLNYMPVVYHGKGIYRSIIDGTEVRIKPLPKDKFK*
Ga0187809_103563781	3300017937	Freshwater Sediment	MSGRGGDYPRKSPMTDQPDLWKEGQRVMLECDGEKWLAEIVMTSKNGVSLMIAFDGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRT
Ga0187785_100390943	3300017947	Tropical Peatland	MTDQPDLWKEGQGILLECEGETFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRR
Ga0187779_101051792	3300017959	Tropical Peatland	MTDQPDLWKEGQGILLECEGETFPAEIVMTSKNGVSLMIGFKGTIHGHRNYMPVTYHGSGIYRSIIDGTEVRVKPPPSGRRR
Ga0187779_107648422	3300017959	Tropical Peatland	MTDQPDLWKEGQSVLLECDGEKWLAEVVGVSLMLAFKGTIHGHLNYMPVMYHGNGIYRSIINGTEVRIKPLPKDIF
Ga0187777_103532924	3300017974	Tropical Peatland	MTDRPDRWKEGQGILLECDGERWLAEITMTSRNSVSLMIGFNGTIQGHLNYMPVMYHGKGVYRSIIDGTEVRVRPLP
Ga0187777_106078762	3300017974	Tropical Peatland	MTDQPDLWEEGQGILLECEGETFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRR
Ga0187822_100678731	3300017994	Freshwater Sediment	MLECDGEKWLAEIVMTSKNGVSLMIAFDGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRT
Ga0187767_102849052	3300017999	Tropical Peatland	MTDQPDLWKEGQSVLLECDGEKWLAEVVGVSLMLAFKGTIHGHLNYMPVMYHGNGIYRSIINGTEVRIKPLPRGRRR
Ga0187771_114087542	3300018088	Tropical Peatland	RKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVMYHGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0210407_100940723	3300020579	Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210407_101337513	3300020579	Soil	MTDQPDLWKEGQRILLECEGKTFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210407_103264752	3300020579	Soil	MTDQPDLWKEGQGILLECEGETFQAEIAMTSKNGVALMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRHA
Ga0210407_106396961	3300020579	Soil	VTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGMYRSIIDGTEVRVKPLPRGRRA
Ga0210399_103107983	3300020581	Soil	MTDQPDLWKEGQGILLECEGETFLAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210395_102550751	3300020582	Soil	MTDQPDLWKEGQGILLECEGETFLAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVRPLPRGRRA
Ga0210401_112697181	3300020583	Soil	VTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210406_103046951	3300021168	Soil	RPLAILHRKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGTYRSIIDGTEARVTPLPKDIFK
Ga0210406_106258142	3300021168	Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDG
Ga0210400_105654673	3300021170	Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGMYRSIIDGTEVRVKPLPRGRRA
Ga0210405_100588412	3300021171	Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVRPLPRGRRA
Ga0210405_105501712	3300021171	Soil	MIDQPNLWKEGQGILLECDGGNWLAEIVMASKNGVSLMIGFKGTIHGHLNYMPVTYHGKGTYRSIIDG
Ga0210408_100210624	3300021178	Soil	MTDQPDLWKEGQGILLECEGETFQAEIVMTSKNGVSLMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGGRA
Ga0210408_102304552	3300021178	Soil	MIDQPNLWKEGQGILLECDGGNWLAEIVMASKNGVSLMIGFKGTIHGHLNYMPVTYHGKGIYRSIVDGTEARVRPLPKDIFK
Ga0210408_103475461	3300021178	Soil	KGWGLTKVSPPMTDQPDLWKEGQGILLECEGETFQAEIAMTSKNGVALMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRHA
Ga0210408_113809751	3300021178	Soil	MTDQPDLWKEGQGILLECEGETFQAEIVMTSKNGVALMIAFKGTIHGHRNYMPLTYHGDGIYRSIIDGTEVRVKPLPRGRR
Ga0210393_109972192	3300021401	Soil	NQQPGGEYFGLSMIDQPDLWKEGQGILLECNGERWLAEIVMTSKNGFSLMIGFKGAIHGHLNYMPVTYHGKGIYRSIIDGTEARVRPLPKDIFK
Ga0210385_103872132	3300021402	Soil	MTDQPDLWKEGQGILLECEGETFQAEIVMTSKNGVSLMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210397_105330722	3300021403	Soil	MEIRSAHRKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVTYHGKGTYRSIIDGTEVRVKPLPKDIFK
Ga0210389_112677371	3300021404	Soil	MTDQPDLWKEGQGILLVCEGETFLAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRHA
Ga0210383_106093714	3300021407	Soil	MIDQPDLWKEGQSILLECDGEKWLAEIVMTSKNGISLMIGFNGTIHGHLNYMPVMYHGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0210383_114118291	3300021407	Soil	EVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVTYHGKGTYRSIIDGTEVRVKPLPKDIFK
Ga0210394_103278033	3300021420	Soil	MTDQPDLWKEGQGILLECEGETFPAEIVMTSKNGVALMVAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210390_102589841	3300021474	Soil	MIDQPDLWKEGQGILLECNGERWLAEIVMTSKNGFSLMIGFNGTIHGHPNCMPVTYEGKGIYRSIIDGTEARVRPLPKDIFK
Ga0210390_103548893	3300021474	Soil	VSRVMEIRSAHRKEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVTYHGKGTYRSIIDGTEVRVKPLPKDIFK
Ga0210390_115955332	3300021474	Soil	SPPMTDQPDLWKEGQRILLECEGKTFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210392_103892581	3300021475	Soil	MTDQPDLWKEGQRILLECEGKTFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRG
Ga0210392_105222491	3300021475	Soil	GLTKVSPPMTDQPDLWKEGQGILLECEGETFQAEIAMTSKNGVALMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRT
Ga0210398_102823983	3300021477	Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0210410_105481342	3300021479	Soil	MTDQPDLWKEGQGILLECEGEKVQAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGR
Ga0210410_109222931	3300021479	Soil	QPDLWKEGQGILLECNGERWLAEIVMTSKNGFSLMIGFKGAIHGHLNYMPVTYHGKGIYRSIIDGTEARVRPLPKDIFK
Ga0210409_101657861	3300021559	Soil	MTDQPDLWKEGQGILFECEGETFQAEIVMTSKNGVSLMIGFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRHA
Ga0207661_116550061	3300025944	Corn Rhizosphere	MRPPQPQVGKRLNRQGVLLECDGQEWLAEIEMTSKNGGSLMIDFNGTIHNHLNYVPVMYHGKGIYRSIIDGTEVRIKPMPKDIFK
Ga0209733_10547642	3300027591	Forest Soil	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0209118_10843751	3300027674	Forest Soil	VTGQPDLWKVGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLSYMPVIYSGKGFYRSIIDGTEVRVKPLPKDIFK
Ga0209068_101065163	3300027894	Watersheds	MIDQPDRWKEGQGILLECNGEKWLAEIVMTSKNGGSLMIGFSGTIHGHRNYMPVTYDGKGIYRSIIDGTEARVKPLPKDIFK
Ga0209068_102106161	3300027894	Watersheds	KEVSVTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFDGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0209068_102773582	3300027894	Watersheds	VTDQPDLWKEGQGILLECDGETWLAEITMTSKNGASLMISFNGTIHGHLNHMPVIYSGNGIYRSIIDGTEVRVKPLQKDIFK
Ga0209777_103882292	3300027896	Freshwater Lake Sediment	MSRVMEFVRLIRKEVSVTDQPDLWKVGQGILLECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNNMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0209067_101643242	3300027898	Watersheds	MTDQPDLWKEGQGILLECEGEKVQAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKALPRGRRT
Ga0209067_107716481	3300027898	Watersheds	LAVLHRKEVSVTGQPDLWKVGQGILNECDGEKWLAEIVMTSKNGVSLMIGFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0209583_104633631	3300027910	Watersheds	MTDQPDLWKEGQGVLLECEGEKWLAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPKDIFK
Ga0209698_100172109	3300027911	Watersheds	MTDQPDLWKEGQGILLECEGETFPAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKALPRGRRT
Ga0209698_102903702	3300027911	Watersheds	VSVTGQPDLWKVGQGILLECDGEKWLAEIVMTSKNGVSLMISFNGTIHGHLNYMPVTYHGKGIYRSIIDGTEVRVKPLPKDIFK
Ga0209069_104850341	3300027915	Watersheds	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKALPRGRRT
Ga0209526_101355333	3300028047	Forest Soil	VTDQPDLWKEGQGILLECDGEKWLAEIVMTSKNGVSLMIRFNGTIHGHLNYMPVIYSGKGIYRSIIDGTEVRVKLLPKDIFK
Ga0222749_102932193	3300029636	Soil	VTDQPDLWKEGQGILLECEGETFLAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRA
Ga0265760_101867862	3300031090	Soil	MEIRSAHRKEVSVTDQPDLWKEGQGILLECEGETFPAEIVMTSKNGVALMVAFKGTIHGHRNYMPVTYHGNGMYRSIIDGTEVRVKPLPRGRRA
Ga0307476_105247671	3300031715	Hardwood Forest Soil	MTDQPDLWKEGQGILLECEGETFPAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPIGRRT
Ga0307474_104864822	3300031718	Hardwood Forest Soil	MTDQPDLWKEGQGILLECEGEKFLAEIAMTSKNGVALMIAFKGTIHGHRNYMPVTYHANGIYRSIIDGTEVRVKPLPRGRRA
Ga0307474_114419091	3300031718	Hardwood Forest Soil	MTDQPDLWKEGQGILLECEGERFLAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPRGRRT
Ga0307475_114026761	3300031754	Hardwood Forest Soil	MTDQPDLWKEGQGILLECEGEKFLAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVKPLPIGRRT
Ga0307478_115330771	3300031823	Hardwood Forest Soil	MTDQPDLWKEGQGILLECEGEKFLAEIVMTSKNGVALMIAFKGTIHGHRNYMPVTYHGNGIYRSIIDGTEVRVK
Ga0316620_123669781	3300033480	Soil	MTDQPDLWKEGQGILLECDGEKWMAEIVMTSKNGVSLMIGFNGTIHGHLNCMPVMYDGKGIYRSIIDGTEVRVKPLPKDI
Ga0316628_1041904571	3300033513	Soil	MTDQPDLWKEGQGILLECDGEKWMAEIVMTSKNGVSLMIGFNGTIHGHLNCMPVMYDGKGIYRSIIDG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences