Metagenome / Metatranscriptome Family F101699

Basic Information
Family ID	F101699
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	41 residues
Representative Sequence	DGDFEFRRTEYDVPRAAAGYRSMGGDFGEFAARRIERGSD
Number of Associated Samples	94
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	5.88 %
% of genes from short scaffolds (< 2000 bps)	5.88 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Unclassified (95.098 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.628 % of family members)
Environment Ontology (ENVO)	Unclassified (26.471 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.902 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.35% β-sheet: 0.00% Coil/Unstructured: 67.65%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02566	OsmC	57.84
PF16193	AAA_assoc_2	9.80
PF12850	Metallophos_2	7.84
PF13442	Cytochrome_CBB3	6.86
PF12002	MgsA_C	6.86
PF00903	Glyoxalase	1.96
PF01494	FAD_binding_3	0.98
PF00149	Metallophos	0.98
PF03006	HlyIII	0.98
PF07676	PD40	0.98
PF03301	Trp_dioxygenase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	57.84
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	57.84
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.96
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.98
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.98
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.98
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.98
COG3483	Tryptophan 2,3-dioxygenase (vermilion)	Amino acid transport and metabolism [E]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
All Organisms	root	All Organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
cellular organisms	root	All Organisms → cellular organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005574\|Ga0066694_10429645	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300009177\|Ga0105248_12874301	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300017659\|Ga0134083_10568300	Not Available	515	Open in IMG/M
3300031543\|Ga0318516_10217760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300031544\|Ga0318534_10211910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300032009\|Ga0318563_10208722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1053	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.45%
Host-Associated	Host-Associated	21.57%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.61%
Plants	Host-Associated → Plants	21.57%
Aquatic	Environmental → Aquatic	7.84%
Solid Waste	Engineered → Solid Waste	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.80%
Sediment	Environmental → Aquatic → Sediment	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Marine	Environmental → Aquatic → Marine	0.98%
Phylloplane	Host-Associated → Plants → Phylloplane	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.80%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027991	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK24	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_00832310	2170459019	Switchgrass, Maize And Mischanthus Litter	RVRFQRTEYDVERAADGVPAMGGDFGEFAARRIERGSD
C688J18823_105677713	3300001686	Soil	DGEFEFRRTEYDNERAADAFRELGGRFGEMVAGRILRGSD*
JGI24738J21930_100833071	3300002075	Corn Rhizosphere	RRTDYDVERAAAAYRQMRGDFGEFAANRIERGSD*
Ga0062595_1013944201	3300004479	Soil	AVRDDEGRFEFRRTEYDNERSAAAYLALGGGFGEMVARRLERGSD*
Ga0062594_1001760473	3300005093	Soil	WDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAAGRIERGSD*
Ga0066677_106348621	3300005171	Soil	WEDDFTFRRTEYDVEAAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066679_105590612	3300005176	Soil	GEFEFRRTEYDIERAAAGWRKLGGDFGKFAAERIERGRD*
Ga0068868_1003779713	3300005338	Miscanthus Rhizosphere	WDGDFEFRRSDYDVARAAEGYRSLGGDFGEFAARRIERGSD*
Ga0070688_1009641221	3300005365	Switchgrass Rhizosphere	TWDGDFTFRRTEYDAEAAAAAYRSMGGDFGEFAAHRIERGSD*
Ga0070701_109777671	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	IQDDDGEFAFRRTDYDVERAAAAYRQMRGDFGEFAANRIERGSD*
Ga0070700_1007838013	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	DDHFTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD*
Ga0066689_108094772	3300005447	Soil	WDGDFTFRRTEYDFEAAAAAYRAMGGDFAEFAARRIEKGSD*
Ga0070707_1018452021	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	DGDFTFRRTEYDAEAAAAAYRSMGGDFGEFAARRLERGSD*
Ga0066694_104296452	3300005574	Soil	AWATWDGDFEFRRTEYDVARAAAGYRSLAGEFGEFAARRIELGSD*
Ga0070717_101983373	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRADDGEFAFRRTEYDAQAAADGYRRLGGEFGEFAARRIERGSD*
Ga0066652_1007815211	3300006046	Soil	WAVRGDDGQFAFRRTEYDVERAATAYRELGGDFGQFAADRILRGSD*
Ga0070716_1016925131	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	FRRTEYDVERAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0070712_1017765272	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GAFEFRRCEYDVERAAAGYRSMGGNFGEFAARRIEKGSD*
Ga0074051_117845141	3300006572	Soil	GELEFRRTEYDVERAADAYRAMSGRFGPLAARRIERGSD*
Ga0074055_115597662	3300006573	Soil	DGDFEFRRTEYDVPRAAAGYRSMGGDFGEFAARRIERGSD*
Ga0079222_122927891	3300006755	Agricultural Soil	DFELRRTEYDIQRAADGFRALGGDFAEFAANRIERGSD*
Ga0066653_100521263	3300006791	Soil	EFRFERTDYDVERAAEAYRSLGGGFGDMAARRIERGSD*
Ga0075436_1001419844	3300006914	Populus Rhizosphere	WATWNGDFTFRRTDYDFEAAAAAYRAMGGEFGEFAARRLEKGSD*
Ga0099827_111933293	3300009090	Vadose Zone Soil	WATWDGDFVFRRTEYDVARAAAGYRSLAGEFGEFAARRIERGSD*
Ga0075418_112887383	3300009100	Populus Rhizosphere	FRRTEYDVERALAGWRAVPGPFGEMVTHRIEHGSD*
Ga0066709_1002572014	3300009137	Grasslands Soil	WDGDFTFRRTEYDVAPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0066709_1004849821	3300009137	Grasslands Soil	DDGEFEFRRTEYDVERAAAAWRKLGGDFGTFAAARIERGSD*
Ga0066709_1012297663	3300009137	Grasslands Soil	RRTEYAVARAAEGYRSMGGDFGEFAARRIERGSD*
Ga0105248_128743012	3300009177	Switchgrass Rhizosphere	WATWDGDFQLRRTEYDVARAAEGYRALAGDFGEFAAARIERGSD*
Ga0105238_109969331	3300009551	Corn Rhizosphere	WDGDFELRRTEYEVARAAAGYRSMGGDFGEFAARRIERGSD*
Ga0126374_101839581	3300009792	Tropical Forest Soil	DFTFRRTAYNAEPAAAAYRSMGGDFGEFAARRIERGSD*
Ga0126309_107792652	3300010039	Serpentine Soil	ATWDGDFEFRRTEYDVARAAAGYAGLGGNFGEFAAARIRKGSD*
Ga0126314_101330533	3300010042	Serpentine Soil	FEFRRTEYDTERAAAEWRVLASPWCEQAAGRIERGSD*
Ga0126382_115844771	3300010047	Tropical Forest Soil	RRTEYDVQRAADAYRRMGGSFGEFASRRIERGSD*
Ga0126319_14402053	3300010147	Soil	AVRYDDGQFEFRRTEYDNQRAADAYRKLGGEFGEFAARRLERGSD*
Ga0134086_100462241	3300010323	Grasslands Soil	RRTAYDLEPAAAAYRAMGGDFGEFAARRIEKGSD*
Ga0134064_103449901	3300010325	Grasslands Soil	FEFRRTEYDVERAAAAYRAMGGEFGEFAARRIERGSD*
Ga0134065_101709631	3300010326	Grasslands Soil	WATWEGDFAFRRTAYDVEAPAAAYRAMGGDFGEFAARRIEKGSD*
Ga0134080_104322413	3300010333	Grasslands Soil	FERTEYDVQRAADAYRSMGGGFGDMAAGRIERGSD*
Ga0126376_111647113	3300010359	Tropical Forest Soil	VRTPEGDLEFRRTEYDVERAAEAYEALGGRFGRFMGRRIRRGSD*
Ga0105239_101861184	3300010375	Corn Rhizosphere	WATVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD*
Ga0150985_1143422561	3300012212	Avena Fatua Rhizosphere	GEFEFRRTEYDNERAAAAFRELGGNFGEMVAGRIERGSD*
Ga0150985_1177056443	3300012212	Avena Fatua Rhizosphere	DGAFGLRRTEYDVQRAADAYRALGGGFGEMVANRIEKGSD*
Ga0150984_1016503422	3300012469	Avena Fatua Rhizosphere	AVRTEGEFAFRRTTYDVERAVDGFRRLGGGFGAMVVRRLERGSD*
Ga0150984_1228665731	3300012469	Avena Fatua Rhizosphere	ATWDSDFAFRRTDYDVARAADGYRVMGGNFGEMASRRIERGSD*
Ga0157314_10490301	3300012500	Arabidopsis Rhizosphere	RRTEYDVERAAAGYRSLDGDIAEFAASRIERGSD*
Ga0157282_100024754	3300012904	Soil	AWATVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD*
Ga0164300_103354241	3300012951	Soil	TWNGDFAFRRTEYDVERAAATYRAMGGDFAEFAARRIEKGSD*
Ga0164300_106630942	3300012951	Soil	FRRTEYDNQRAADAYRKLGGEFGEFAARRLERGSD*
Ga0164309_111526373	3300012984	Soil	DFEFRRTEYDVARAAAGYRSMGGEFGEFAATRIERGSD*
Ga0134089_103150041	3300015358	Grasslands Soil	PQPGEFEFRRCEYDVERAADGYRRMGGDFGEMAAGRIERGSD*
Ga0132258_115802994	3300015371	Arabidopsis Rhizosphere	DGDFELRRTGYDVARAAAGYRSLGGDFGEFAARRIERGSD*
Ga0132257_1025631392	3300015373	Arabidopsis Rhizosphere	WDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAARRIERGSD*
Ga0134083_105683001	3300017659	Grasslands Soil	AAWATWAGDFEFRRTEYDVQRAADGYRAMGGDFGEFAATRIERGSD
Ga0184608_103183282	3300018028	Groundwater Sediment	EFHRTAYDVARAAAGYRSMGGEFGEFASRRIERGSD
Ga0184619_100857461	3300018061	Groundwater Sediment	GEFEFRRTEYDVEQAAAGYRSMGGEFGEFAARRIERGSD
Ga0184640_103642132	3300018074	Groundwater Sediment	DFTFRRVEYDWQRAAAGFRRMGGDFGEFAAVRIERGSD
Ga0066655_107562312	3300018431	Grasslands Soil	RPGEFWFERTDYDVERAAEAYRLMGGQFGEFAARRIERGSD
Ga0066669_108553641	3300018482	Grasslands Soil	SAEPGEFEFRRCEYDVERAADGYRRMGGDFGEFAARRIERGSD
Ga0173482_100900691	3300019361	Soil	TFDDDDFTFRRTEYDTQRAADAYRAMGGAFGEMAGNRIERGSD
Ga0210382_104546292	3300021080	Groundwater Sediment	VRTDGGEFEFRRTEYDVEKAAAGYRSMGGEFGEFAARRIERGSD
Ga0210382_105283831	3300021080	Groundwater Sediment	WDGDFDFRRTDYDVARAAAGYRSLAGDFGEFAARRIEKGSD
Ga0222622_102290201	3300022756	Groundwater Sediment	WATRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIERGSD
Ga0247795_10145181	3300022899	Soil	TVEGDFVLRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD
Ga0247790_101151941	3300022915	Soil	DFILRRTEYDVRRAADAYRALGGRFGEFMGRRIERGSD
Ga0247664_11129621	3300024232	Soil	WAVRRDDGDFEFRRAEYDVERAAAGWRTLGSDFGELAARRVERGRD
Ga0210120_11192352	3300025556	Natural And Restored Wetlands	AFEFRRTEYDNQRAAAAYRELAGDFGAMAAGRILRGSD
Ga0207687_106093543	3300025927	Miscanthus Rhizosphere	FRRTEYDVARAAAGYRSMGGDFSEFAARRIERGSD
Ga0207700_101805143	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	SAWATFDDHFTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD
Ga0207691_111882611	3300025940	Miscanthus Rhizosphere	ADDGEFAFRRTEYDAQAAADGYRRLGGEFGEFAARRIERGSD
Ga0207689_101717953	3300025942	Miscanthus Rhizosphere	AVRDDEGRFEFRRTEYDNERSAAAYLALGGGFGEMVARRLERGSD
Ga0207667_115758572	3300025949	Corn Rhizosphere	DGQFEFRRTSYDNERAAHAYRKLGGEFGEFAARRIERGSD
Ga0207648_116593312	3300026089	Miscanthus Rhizosphere	FRRTDYDVERAAAAYRQMRGDFGEFAANRIERGSD
Ga0209687_10326354	3300026322	Soil	WATWDGDFTFRRTEYDVEPAAAAYRAMGGDFGEFAARRIEKGSD
Ga0209267_13153481	3300026331	Soil	QPGEFEFRRCEYDVERAAEAYRAMGGDFGAFAARRIERGSD
Ga0209803_12724221	3300026332	Soil	WDGDFTFRRTEYDFEAAAAAYRAMGGDFAEFAARRIEKGSD
Ga0209159_12354601	3300026343	Soil	AVSERPGEFLFERTDYDVERAAEAYRLMGGQFGEFAARRIERGSD
Ga0209795_101213991	3300027718	Agave	LEDGEFAFRRTEYDVERAAEAYRRMGGAFGEMAAARIEKGSD
Ga0247683_10041571	3300027991	Soil	TFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD
Ga0307313_102301971	3300028715	Soil	EFRRTEYDVEKAAAGYRSMGGEFGEFAARRIVRGSD
Ga0307301_101602712	3300028719	Soil	RTDDGEFQFRRTEYDADSAAAAYRRMGGGFGEMAAKRIEKGSD
Ga0307301_101884483	3300028719	Soil	TWDGDFEFRRTDYDVARAAEGYRSMGGDFGEFAARRIERGSD
Ga0307317_100232411	3300028720	Soil	WAIQDYDGEFAFRRTQYDVERTAAAYRQMPGDFGEFAANRIERGSD
Ga0307315_102915441	3300028721	Soil	DDGVFEFRRTAYDNQRAADAYRKLGGDFGEFAARRLERGSD
Ga0307318_102437531	3300028744	Soil	WAVRTDDGEFQFRRTEYDADSAAEAYRRMGGGFGEMAARRIEKGSD
Ga0307280_101980771	3300028768	Soil	TRDGDFEFRRTEYDVARAAAGYRSMGGDFGEFAANRIEKGSD
Ga0307320_100517081	3300028771	Soil	TWDYDFTFRRTEYDVERAAAAYCALGGAFGEMAARRIEHGSD
Ga0307305_100720583	3300028807	Soil	AVRTDDGEFQFRRTEYDADSAAAAYRRMGGGFGEMAAKRIEKGSD
Ga0307310_101635451	3300028824	Soil	DDGEFQFRRTEYDADSAAEAYRRMGGGFGEMAARRIEKGSD
Ga0307312_104869823	3300028828	Soil	DFEFRRTEYDVARAAEGYRSMGGDFGEFAARRIERGSD
Ga0307300_100147301	3300028880	Soil	TWEGDFAFRRTEYDVERAAAAYRSLGGPFGEMAANRILKGSD
Ga0307277_100239981	3300028881	Soil	FDFRRSAYDVARAAAGYRSMSGEFGQFAAGRIERGSD
Ga0247826_102514541	3300030336	Soil	EGDFVLRRTEYDVRRAAEAYRALGGRFGEFMGRRIERGSD
Ga0247826_107167301	3300030336	Soil	FEFRRTDYDTERAAAGFRTMGGELAEWAANRILRGSD
Ga0308204_102385922	3300031092	Soil	FAFRRTEYDVERAAAAYRQMRGDFGKFAANRIERGSD
Ga0318516_102177603	3300031543	Soil	RDDGEFEFRRTEYDVARAIEGWRRLGAGFPELAARRLELGRD
Ga0318534_102119101	3300031544	Soil	WAVRRDDGEFEFRRTEYDVARAIEGWRRLGAGFPELAARRLELGRD
Ga0318563_102087223	3300032009	Soil	DDGEFEFRRTEYDVARAIEGWRRLGAGFPELAARRLELGRD
Ga0307471_1032127101	3300032180	Hardwood Forest Soil	DGHLTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD
Ga0334913_088871_505_639	3300034172	Sub-Biocrust Soil	VRADDGELVFRRTEYDVERAVDAYRRMGGDFGGMAARRLERGSD
Ga0373948_0135566_479_604	3300034817	Rhizosphere Soil	FDGHFTFRRTEYDVERAAEAYRGMGGAFGEFAANRILRGSD
Ga0373950_0001343_3070_3189	3300034818	Rhizosphere Soil	GDFTLRRTEYDAEAAAAAYRSMGGDFGEFAARRLERGSD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101699

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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