Metagenome / Metatranscriptome Family F101545

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101545
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	76 residues
Representative Sequence	LSATAQAQVTQTGPNTINVKVTKAGGIPTDLLGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.10 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.627 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.471 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.73% β-sheet: 35.58% Coil/Unstructured: 57.69%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01230	HIT	44.12
PF13581	HATPase_c_2	16.67
PF01209	Ubie_methyltran	6.86
PF01039	Carboxyl_trans	1.96
PF00294	PfkB	0.98
PF08843	AbiEii	0.98
PF10090	HPTransfase	0.98
PF03551	PadR	0.98
PF13377	Peripla_BP_3	0.98
PF05977	MFS_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	6.86
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	6.86
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	1.96
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	1.96
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	1.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.98
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.63 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	67.65 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.69 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	46.08 %
Unclassified	root	N/A	31.37 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	43.14 %
Unclassified	root	N/A	31.37 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %

Name	Rank	Taxonomy	Distribution
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	37.25 %
Unclassified	root	N/A	31.37 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	37.25 %
Unclassified	root	N/A	31.37 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomadura flavalba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	34.31 %
Unclassified	root	N/A	31.37 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10188952	Not Available	510	Open in IMG/M
3300005602\|Ga0070762_10707708	Not Available	676	Open in IMG/M
3300005921\|Ga0070766_10677481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	697	Open in IMG/M
3300006028\|Ga0070717_10929624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	792	Open in IMG/M
3300006028\|Ga0070717_11118819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	717	Open in IMG/M
3300006050\|Ga0075028_100736405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300006176\|Ga0070765_101263266	Not Available	697	Open in IMG/M
3300009628\|Ga0116125_1251873	Not Available	513	Open in IMG/M
3300010343\|Ga0074044_10211801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1285	Open in IMG/M
3300010379\|Ga0136449_102243868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	794	Open in IMG/M
3300011270\|Ga0137391_10299750	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1387	Open in IMG/M
3300014162\|Ga0181538_10579441	Not Available	586	Open in IMG/M
3300014201\|Ga0181537_10380846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	968	Open in IMG/M
3300014657\|Ga0181522_10012963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4495	Open in IMG/M
3300016270\|Ga0182036_10088428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2072	Open in IMG/M
3300016357\|Ga0182032_11760591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	541	Open in IMG/M
3300017822\|Ga0187802_10348703	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300017822\|Ga0187802_10376291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	560	Open in IMG/M
3300017822\|Ga0187802_10418708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	531	Open in IMG/M
3300017924\|Ga0187820_1002947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3901	Open in IMG/M
3300017924\|Ga0187820_1088064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	880	Open in IMG/M
3300017926\|Ga0187807_1193693	Not Available	657	Open in IMG/M
3300017926\|Ga0187807_1253261	Not Available	577	Open in IMG/M
3300017928\|Ga0187806_1383690	Not Available	505	Open in IMG/M
3300017955\|Ga0187817_10482812	Not Available	791	Open in IMG/M
3300017955\|Ga0187817_10706736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	643	Open in IMG/M
3300017961\|Ga0187778_10505171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	803	Open in IMG/M
3300017966\|Ga0187776_11417816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	530	Open in IMG/M
3300017975\|Ga0187782_10107021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2060	Open in IMG/M
3300017994\|Ga0187822_10172009	Not Available	708	Open in IMG/M
3300018007\|Ga0187805_10132038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1134	Open in IMG/M
3300018026\|Ga0187857_10385451	Not Available	633	Open in IMG/M
3300018058\|Ga0187766_10772734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	669	Open in IMG/M
3300018085\|Ga0187772_10249917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300018085\|Ga0187772_10979446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	617	Open in IMG/M
3300020583\|Ga0210401_10773537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	820	Open in IMG/M
3300021088\|Ga0210404_10922662	Not Available	500	Open in IMG/M
3300021170\|Ga0210400_11031945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	668	Open in IMG/M
3300021171\|Ga0210405_10788069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	729	Open in IMG/M
3300021402\|Ga0210385_10933509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	666	Open in IMG/M
3300021405\|Ga0210387_10623830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	957	Open in IMG/M
3300021406\|Ga0210386_10516794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1032	Open in IMG/M
3300021474\|Ga0210390_10827175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	765	Open in IMG/M
3300021478\|Ga0210402_11692635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	559	Open in IMG/M
3300021559\|Ga0210409_11267510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300022557\|Ga0212123_10733315	Not Available	603	Open in IMG/M
3300022716\|Ga0242673_1019229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	956	Open in IMG/M
3300025915\|Ga0207693_11340694	Not Available	534	Open in IMG/M
3300025928\|Ga0207700_11436623	Not Available	613	Open in IMG/M
3300026489\|Ga0257160_1027352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	929	Open in IMG/M
3300027003\|Ga0207722_1029294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	599	Open in IMG/M
3300027096\|Ga0208099_1039247	Not Available	679	Open in IMG/M
3300027110\|Ga0208488_1008953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	2023	Open in IMG/M
3300027505\|Ga0209218_1039128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	940	Open in IMG/M
3300027698\|Ga0209446_1056022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	999	Open in IMG/M
3300027703\|Ga0207862_1123655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	777	Open in IMG/M
3300027812\|Ga0209656_10074143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1847	Open in IMG/M
3300027829\|Ga0209773_10094570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231	Open in IMG/M
3300027853\|Ga0209274_10746433	Not Available	504	Open in IMG/M
3300027889\|Ga0209380_10423557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	780	Open in IMG/M
3300027911\|Ga0209698_10431211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1027	Open in IMG/M
3300027915\|Ga0209069_10849248	Not Available	549	Open in IMG/M
3300028747\|Ga0302219_10352777	Not Available	574	Open in IMG/M
3300028781\|Ga0302223_10103715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	941	Open in IMG/M
3300028789\|Ga0302232_10592762	Not Available	544	Open in IMG/M
3300028808\|Ga0302228_10097040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1382	Open in IMG/M
3300028879\|Ga0302229_10318649	Not Available	697	Open in IMG/M
3300028906\|Ga0308309_10373708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1219	Open in IMG/M
3300028906\|Ga0308309_11148932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	670	Open in IMG/M
3300029943\|Ga0311340_10774364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	813	Open in IMG/M
3300030013\|Ga0302178_10134986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1236	Open in IMG/M
3300030057\|Ga0302176_10082916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M
3300030058\|Ga0302179_10495397	Not Available	536	Open in IMG/M
3300030399\|Ga0311353_11522983	Not Available	541	Open in IMG/M
3300030520\|Ga0311372_11517278	Not Available	824	Open in IMG/M
3300030739\|Ga0302311_10534021	Not Available	800	Open in IMG/M
3300030872\|Ga0265723_1021948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	559	Open in IMG/M
3300031122\|Ga0170822_16565209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	589	Open in IMG/M
3300031549\|Ga0318571_10053778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300031572\|Ga0318515_10422345	Not Available	713	Open in IMG/M
3300031672\|Ga0307373_10674629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	510	Open in IMG/M
3300031680\|Ga0318574_10648514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	619	Open in IMG/M
3300031681\|Ga0318572_10215133	Not Available	1125	Open in IMG/M
3300031708\|Ga0310686_112216005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1033	Open in IMG/M
3300031708\|Ga0310686_112367515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1555	Open in IMG/M
3300031715\|Ga0307476_10389809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1028	Open in IMG/M
3300031715\|Ga0307476_10828547	Not Available	684	Open in IMG/M
3300031715\|Ga0307476_11119900	Not Available	578	Open in IMG/M
3300031736\|Ga0318501_10451233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	698	Open in IMG/M
3300031751\|Ga0318494_10305619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	918	Open in IMG/M
3300031751\|Ga0318494_10484924	Not Available	720	Open in IMG/M
3300031753\|Ga0307477_11136711	Not Available	509	Open in IMG/M
3300031754\|Ga0307475_10733253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	787	Open in IMG/M
3300031945\|Ga0310913_11179395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	533	Open in IMG/M
3300032009\|Ga0318563_10372108	All Organisms → cellular organisms → Bacteria → Terrabacteria group	773	Open in IMG/M
3300032039\|Ga0318559_10620083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	504	Open in IMG/M
3300032067\|Ga0318524_10339463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	779	Open in IMG/M
3300032067\|Ga0318524_10432052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	688	Open in IMG/M
3300032068\|Ga0318553_10165130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1149	Open in IMG/M
3300032068\|Ga0318553_10362123	Not Available	759	Open in IMG/M
3300032896\|Ga0335075_10372629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1537	Open in IMG/M
3300033289\|Ga0310914_10675982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.49%
Aquatic	Environmental → Aquatic	24.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.73%
Freshwater	Environmental → Aquatic → Freshwater	20.59%
Peat	Environmental → Terrestrial → Peat	11.76%
Sediment	Environmental → Aquatic → Sediment	2.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.22%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.59%
Loam	Environmental → Terrestrial → Soil → Loam	15.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.98%
Clay	Environmental → Terrestrial → Soil → Clay	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.98%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.47%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	11.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030872	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_101889521	3300003368	Bog Forest Soil	ADISLGPLSDTATAQVTRTGSNQINVKVIDFGGIPADALGNLANFSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ*
Ga0070762_107077081	3300005602	Soil	NVKVTNADGIPTSVLGNLADFSFSIPKLPPGVSIRSVSVTQQGVMISISGQNTTLSQNS*
Ga0070766_106774812	3300005921	Soil	PLSDTAQAQVTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS*
Ga0070717_109296241	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LTSDGGNRIKANISLGPFSETAVAEVTQTGGNKINIKVIDAGDIPTAALGNLANFSVTIPKLPSGVTIQKVSVTQQGIQVALTGHNTDLSQS*
Ga0070717_111188191	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PLSDTAVAQVTQTGSNQINVKVIDFGGIPADALGNLANFSITIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ*
Ga0075028_1007364052	3300006050	Watersheds	VLGSVSATAQVTQTGPNQIHVHVTNFGGMPTDALGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNITLSQNS*
Ga0070765_1012632661	3300006176	Soil	AEAQVTQTGPNTINVKVFNAGGIPQDLLGNLANFSFSIPKLPAGVSIRSVSVTQQGVMISISGQNTTLSQNS*
Ga0116125_12518731	3300009628	Peatland	KANISIGPLSETAVAKVTQSGAGQINVKITNAGDIPTSVLGSLADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ*
Ga0074044_102118013	3300010343	Bog Forest Soil	KANIGIGPLSVPAVAQITRTGSNQINVKVIDADGIPASVLGNLADFSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ*
Ga0136449_1022438681	3300010379	Peatlands Soil	GITLSADGPNQIKADISIGPFSTSAVAQVTQTGSNQINVKIIDAGGIPGSVLGNLANFSFSIPKLPAGVTIQNVSVTQQGLRITAAGQNTTLSQ*
Ga0137391_102997502	3300011270	Vadose Zone Soil	VTDTATAQITRSGPKQINVHVTDAGGIPTSLLGSLANFNIDVPQLPAGMTIQSVNVTPSGVVITITGHNTTLSQ*
Ga0181538_105794412	3300014162	Bog	ADGPNQIKADISIGPFSTSAVAQVTQTGSNQINVKIIDAGGIPGSVLGNLANFSFSIPKLPAGVTIRNVSVTQQGLRITAAGQNTTLSQ*
Ga0181537_103808461	3300014201	Bog	VTQSGPNTINVKVTNADGIPASILGNLADFSFSIPKLPPGVSIRSVSVTQRGVMISISGQNTTLSQNS*
Ga0181522_100129636	3300014657	Bog	GPLSGSAQAQVTQSGPNTINVKVTNADGIPASVLGNLADFSFSIPKLPPGVSIRSVSVTQRGVMITISGQNTTLSQNS*
Ga0182036_100884281	3300016270	Soil	QSGPNQIHVHVTDFGGIPADQLGNFGDFTINLPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0182032_117605912	3300016357	Soil	GDVSATAQVTQSGPNQIHVHVTNLGPIPADALGNFADFTITIPKLPAGVTSQSVSVTQQGVMVSIAGMNTTLSQNS
Ga0187802_103487031	3300017822	Freshwater Sediment	NQIKATVNVLGLLSDPATVQVTQSGPNQISVKVIDAGWIPSDVLGNLLNFSVSLPKLPAGVTIQSVSVTPQGVQITITGQNTTLSQ
Ga0187802_103762911	3300017822	Freshwater Sediment	ISATAQVTQTGPNQIHVHVTNFGGMPTDALGNFGDFTITISKLPPGVSIKSVSVTQQGVMVTITGQNTTLSQNSEPGPAPAGVSRPGMTGTG
Ga0187802_104187081	3300017822	Freshwater Sediment	IPASVMLTPNGGNQIKATVSLGPLSDSAVAQVTQSGPAQINVKIINAGGIPASALGNLADFNINIPKLPPGVAIQSVSVTAQGVQITAAGHDTTLSQNS
Ga0187820_10029471	3300017924	Freshwater Sediment	QTGPNQIHVHVTNFSGMPTDALGNFSDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0187820_10880641	3300017924	Freshwater Sediment	TQSGPNQIHVHVTRFGGIPADQLGNFGDFTITIPKLPPGVSIQSVSVTQQGVLVTITGQNTTLSQNS
Ga0187807_11936931	3300017926	Freshwater Sediment	AQVTQSGPNQIHVHITDCGGIPADQLGNFGDFTISIPKLPSGVAIQSVSVTQQGVQVTIAGHDTTLSQNS
Ga0187807_12532611	3300017926	Freshwater Sediment	LSADGPDRVKITVNIGPLSDTAVAQVSQSGPSQVNVRVIDAGGIPFDILGNPVNFPVNIPKLPAGVSIQSVSVTQQGVRITLTGHNTTLKQ
Ga0187806_13836901	3300017928	Freshwater Sediment	PNQIHVHITDFGGIPADQLGNFGDFTISIPKLPSGVAIQSVSVTQQGVQVTIAGHDTTLSQNS
Ga0187817_104828121	3300017955	Freshwater Sediment	KATLSLGPLSASAVAQVTQSGPNQIHVHVTDFGGIPASQLGNFGDFTISIPKLPPGVTIQSVSVTQQGVQVTITGHDTTLSQNS
Ga0187817_107067361	3300017955	Freshwater Sediment	HVHVTNFGGMQTNALGNFADFTFSIPKLPAGVTIQSVSVTQQGVMVTIAGQNTTLSQNS
Ga0187778_105051711	3300017961	Tropical Peatland	IHVHITDFDGIPADALGNFGDFTFTIPKLPAGVTIQSVSVTQQGVMVTITGQNVTLNQNS
Ga0187776_114178162	3300017966	Tropical Peatland	NQIKATVSVLGLFSAAATVQVTQSGPNQIHVKVIDFGGIPASALGNLADFTVTIPKLPAGVTIQSVSVTQQGLQITATGQNTTISQ
Ga0187782_101070214	3300017975	Tropical Peatland	AGPDQIKATISLGPLSNTATAQVTQTGPNQINVKVIDFGGIPSSALGNLVDFNVSIPKLPSGVTIQSVSVTQQGVQVTVTGHDTTLSQNS
Ga0187822_101720092	3300017994	Freshwater Sediment	LSDPATVQVTQSGPNQISVKVIDAGWIPSDVLGNLLNFSVSLPKLPAGVTIQSVSVTPQGVQITITCQNTTHSQ
Ga0187805_101320381	3300018007	Freshwater Sediment	FGGIPASQLGNFGDFTISIPKLPLGVTIQSVSVTQQGVQVTITGHDTTLSQNS
Ga0187857_103854511	3300018026	Peatland	KANVSIGPLSETAVAQVTQTGSSQINVKIIDAGDIPTSVLGSLADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0187766_107727341	3300018058	Tropical Peatland	TVSILGFFNQTATAQVTQTGPNQITVQVTDFGGIPASVLGNLANFTITLPKLPAGVSIQSVSVTQQGVQIIATGQNVTLSQ
Ga0187772_102499171	3300018085	Tropical Peatland	SASATAEVTVSGPNQIHVHVTDFGGIPGNLLGNFGDFTITIPKLPAGVTIQSVSVTQQGVMVTITGQNVTLNQNS
Ga0187772_109794462	3300018085	Tropical Peatland	ASATAQVTQSGPNQIHVQVTDFGGIPADQLGNFGDFTVSIPKLPAGVTIQSVSVTQQGVRVTIAGHDTTLSQNS
Ga0210401_107735371	3300020583	Soil	SDTAQAQVTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0210404_109226622	3300021088	Soil	GGNKINANISLGPLSDTAQAQVTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0210400_110319451	3300021170	Soil	SATAVAEVTQSGSNTINVKVINAAGIPSDVLGNLANFSFSIPKLPPGVSIQSISVTQQGVMVTISGTHTTLSQNS
Ga0210405_107880692	3300021171	Soil	SGGGNTVNAAISLGPLSATAQAQVTQTGPNTINVKVTKAGGVPTDLLGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTVSGTNTTLSQNS
Ga0210385_109335092	3300021402	Soil	LSSGGGNTVNAAVSLGPLSATAQAQVTQTGPNTINVKVTKAGGIPTDLLGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0210387_106238302	3300021405	Soil	AQVTQTGPNTINVKVTKAGGIPTDLLGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0210386_105167942	3300021406	Soil	PQGSTLTSAGGNKINANISLGPLSDTAQAQVTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0210390_108271752	3300021474	Soil	GNKVKATISLGPLSDTAEAQVTQTGSNTINVKVIDAGGIPSDILGNLANFSFSIPKLPAGVSIQSVSVTQQGVMVTISGTHTTLSQNS
Ga0210402_116926352	3300021478	Soil	FGGMPTDALGNFGDFTITIPKLPPGVSIQSVTVTQQGVMVTITGQNTTLSQNS
Ga0210409_112675102	3300021559	Soil	QTGPNTINVKVTKAGGVPTDLLGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTVSGTNTTLSQNS
Ga0212123_107333152	3300022557	Iron-Sulfur Acid Spring	ATISIGPLSDTAEAQVTQTGPNTINVKVIDAGGIPSDLLGNLANFSFSIPKLPAGVSIQSVSVTQQGVMVTISGTHTTLSQNS
Ga0242673_10192291	3300022716	Soil	LSATAQAQVTQTGPNTINVKVTKAGGIPTDLLGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0207693_113406941	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TSDGGNKIKANIDLGPLSDSAEVQVTQSGRNTINVKVIDAGGIPSDVLGSLANFSFSIPKLPAGVSIQSVSVTQQGVMVIISGTHTTLSQNS
Ga0207700_114366232	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ISLGPLSDTAEAQVTQTGSNTINVKVIDAGGIPSDVLGNLTNFSFSIPKLPAGVSIQSVSVTQQGVMVIISGTHTTLSQNS
Ga0257160_10273522	3300026489	Soil	QGITLSDDGGNKVKATISLGPLSDTAEAQVTQTGPNTINVKVINADGISSDVLGNLANFSFSIPKLPAGVSIRSVSVTQQGVMVTISGTHTTLSQNS
Ga0207722_10292942	3300027003	Tropical Forest Soil	TSATVQVTQSGPNQIRVKVTDFGGIPVSALGNLADFTVTIPKLPAGVTIQSVSVTQQGLQITATGQNTTLSQ
Ga0208099_10392471	3300027096	Forest Soil	ARVTQSGPAQINVKVIDFGGIPASALGNLADFNVNIPKLPSGVSIQSISVTQQGLQVTIAGHDTTLSENS
Ga0208488_10089531	3300027110	Forest Soil	GPNRVKANISIGPLSDTAVAQVTQSGANQINVKIIDAGGIPTSILGSLADFSFSIPKLPAGVSIQGVSVTQQGVLITANGHNTTLSQ
Ga0209218_10391281	3300027505	Forest Soil	ALTPDGGNQVKATISLGPFSDSAVAQITQSGGNQINVKIIDAGGIPTSALGHLANFTITIPKLPAGVTIQSVSVTQQGVQIALAGHDTVLSENS
Ga0209446_10560221	3300027698	Bog Forest Soil	GPLSTSAVAQVTQTGSNQINVKIIDAGGIPGSVLGNLANFSFSIPKLPAGVTIQSISVTQQGLQITAAGQNTTLSQ
Ga0207862_11236552	3300027703	Tropical Forest Soil	TDFGGIPGNLLGNFGNFTITIPKLPAGVTIQSVSVTQQGVMVTITGQNVTLNQNS
Ga0209656_100741434	3300027812	Bog Forest Soil	LTLSLGPLSASADAQVTQSGPNQIHVHVTNFNGIPASQLGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0209773_100945703	3300027829	Bog Forest Soil	DSADAQVTQSGPNTINVKVVDAGGIPTSALGNLADFNISIPKLPSGVSIQSVSVTQQGVMVSISGQNTTLSQNS
Ga0209274_107464331	3300027853	Soil	SLGPISGSAQAQVTQSGSNTINVKVTNADGIPTSVLGNLADFSFSIPKLPPGVSIRSVSVTQQGVMISISGQNTTLSQNS
Ga0209380_104235571	3300027889	Soil	GPLSDTAQAQVTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0209698_104312111	3300027911	Watersheds	ATLSLPVLGSVSATAQVTQTGPNQIHVHVTNFGGMPTDALGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0209069_108492481	3300027915	Watersheds	SADGPNQIKADLSIGPVSIPAVAQVTQTGSNQINVKIVDAGDIPLDVLGNLANFSFSIPKLPAGVTIQSISVTQQGLRITASGQNTTLSQ
Ga0302219_103527772	3300028747	Palsa	KANISIGPLSDTAVAQVTQSGAGQINVKIIDAGGIPTSVLGSLANFSFSIPKLPAGVSIHSVSVTQQGVLITANGHNTTLSQ
Ga0302223_101037152	3300028781	Palsa	IGPLSDTAVAQVTQSGAGQINVKIIDAGGIPTSVLGSLANFSFSIPKLPAGVSIHSVSVTQQGVLITANGHNTTLSQ
Ga0302232_105927621	3300028789	Palsa	TLSPDGPNQVNANISIGPISETAVAQVTQSGDSQINVKIIDAGDIPLSFLGSLANFSFSIPKLPAGVSIQSVSVTQQGVLITAIGHNTTLSQ
Ga0302228_100970401	3300028808	Palsa	LSDTAVAQVTQSGAGQINVKIIDAGGIPTSVLGSLANFSFSIPKLPAGVSIHSVSVTQQGVLITANGHNTTLSQ
Ga0302229_103186491	3300028879	Palsa	ISIGPLSETAIAQVTQSGAGQVNVKIIDAGDIPTSLLGSLANFSFSIPKLPAGVSIQSVSVTQQGVLITADGHNTTLSQ
Ga0308309_103737081	3300028906	Soil	NQIKADVSIGPLSDSAVAQVTQTGSNQINVKIIDAGGVPTSALGSLVNFSFSIPKLPAGVTIQSVSVTQQGVRITATGQNTTLHQ
Ga0308309_111489321	3300028906	Soil	PNQIKANISIGPLSDSAVAQVTQTGSNQINVKIVDAGGIPVDLLGNLANFSFSIPKLPAGVTIQSISVTQQGLRITAGGQNTTLNK
Ga0311340_107743642	3300029943	Palsa	AQVTQSGAGQINVRIIDAGGIPTSVLGSLANFSVSIPKLPAGVTIQSVSVTQQGVLITANGHNTTLSQ
Ga0302178_101349861	3300030013	Palsa	PNQVKANISIGPLSETAVAQVTQSGAGQINVKIIDAGDIPTSLLGSLTNFSFSIPKLPAGVSIQNVSVTQQGVLITASGHNTTLSQ
Ga0302176_100829161	3300030057	Palsa	PNQVKANISIGPLSETAVAQVTQSGAGQINVKIIDAGGIPTSVLGSLANFSFSIPKLPAGVSIHSVSVTQQGVLITANGHNTTLSQ
Ga0302179_104953971	3300030058	Palsa	QGITLSADGPNQVKANISIGPLSETAVAQVTQSGPGQINVKIIDAGDIPTSLLGSLADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0311353_115229832	3300030399	Palsa	GITLSADGPNKVKANISLGPLSETAVAQVTQSGAGTINVKVIDAGGIPTSALGSLANFNVSIPKLPAGVSISSISVTQQGVRITATGHNTTLSQ
Ga0311372_115172781	3300030520	Palsa	RVKANVSIGPLSETAVAQVTQTGSSQINVKIIDAGDIPTSVLGSLADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0302311_105340211	3300030739	Palsa	VAQVTQTGSSQINVKIIDAGDIPTSVLGSLADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0265723_10219481	3300030872	Soil	PLSETAIAQVTRTGSNQINVKIVHAGDIPVDLLGNLANFSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSK
Ga0170822_165652091	3300031122	Forest Soil	TISLGPLSDTAEAQVTQSGPNTINVKVTNAGGIPTDLLGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTISGTHTTLSQNS
Ga0318571_100537781	3300031549	Soil	IHVHVTNLNGIPASELGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0318515_104223451	3300031572	Soil	VTQSGPNQIHVHVTDFGGIPADQLGNFGDFTINLPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0307373_106746292	3300031672	Soil	ADGANQVKATISLGPFSDTAVAQVSQSGGNQIHVKVIDAGGIPTSALGNLADFTVTIPKLPAGVSIQNVSITQQGVQITLAGQNTSLSQ
Ga0318574_106485141	3300031680	Soil	AEAQVTQSGPNQIHVHVTDFGGIPADQLGNFGDFTINLPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0318572_102151331	3300031681	Soil	TNFGGIPTDQLGNFGNFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0310686_1122160053	3300031708	Soil	TGPNTINVKVTNAGGIPLDLLGNLANFNFSIPKLPAGVSIQSISVTQQGVMVTISGTHTTLSQNS
Ga0310686_1123675153	3300031708	Soil	SDSAEAQVTQSGPNTTNVKVVNAGGIPTSALGHLADFNISIPKLPPGVSIQSVSVTQQGVMVSISGQNTTLNQNS
Ga0307476_103898091	3300031715	Hardwood Forest Soil	GLFSDTATAQVTQSGPNQITVKVIDAGGIPADVLGNLADFTVSLPKLPAGVTIQSVSVTQQGLQVTITGQNTTLSQ
Ga0307476_108285472	3300031715	Hardwood Forest Soil	AQVTQTGPNTINVKVINAGGISSDVLGNLTNFSFSIPKLPAGVSIKSVSVTQQGVMVTISGSHTTLSQNS
Ga0307476_111199001	3300031715	Hardwood Forest Soil	VTQTGSNTINVKVIDAGGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQQGVMVTISGSHTTLSQNS
Ga0318501_104512331	3300031736	Soil	AQVTQSGPNQIHVHVTNLGPIPADALGNFADFTITIPKLPAGVTIQSVSVTQQGVMVSIAGMNTTLSQNS
Ga0318494_103056191	3300031751	Soil	GGIPADQLGFSDFTITIPKLPAGVTIQSVSVTQQGVMVSIAGTNTTLSQNS
Ga0318494_104849242	3300031751	Soil	SGPNQIHVHVTNFGGIPTDQLGNFGNFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0307477_111367111	3300031753	Hardwood Forest Soil	TVNAAISLGPLSATAQAQVTQTGPNTINVKVTKAGGVPTDLLGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTVSGTNTTLSQNS
Ga0307475_107332531	3300031754	Hardwood Forest Soil	PNQIHVHVTNFGGMPTDALGNFGDFTITIPKLPPGVSIQSVTVTQQGVMDTITGQNTTLSQNS
Ga0310913_111793951	3300031945	Soil	VIGNVSATAEVTQSGPNQIHVHVTDLNGIPTDALGNFGNFTITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS
Ga0318563_103721081	3300032009	Soil	NQIRVHVTDFGGIPANALGNLADFRVTLPKLPAGLSIQSISVTQQGLRIIVSGQHVTLNQ
Ga0318559_106200831	3300032039	Soil	GPLSASATAQVTQTGPNQIHVQVTDFGGIPASSLGNFGNFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0318524_103394631	3300032067	Soil	LPLLGDVSATAQVTQSGPNQIHVHVTNLGGIPTDALGNFGNFTITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS
Ga0318524_104320523	3300032067	Soil	LGSVSATAQVTQTGPNQIHVHVTNLNGIPASELGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0318553_101651303	3300032068	Soil	DLNGIPTDALGNFANFTITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS
Ga0318553_103621232	3300032068	Soil	VTNFGGIPTDQLGNFGNFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0335075_103726293	3300032896	Soil	ISLGPLSDSAVATITQTGPNKIHVHVNNFGGIPVDQLGNFGDFTITIPKLPPGVTIQSVSVTQQGVRVTISGHDTTLSQNS
Ga0310914_106759821	3300033289	Soil	IHVHVTDLNGIPTDALGNFGNFTITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences