Metagenome / Metatranscriptome Family F101287

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101287
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	106 residues
Representative Sequence	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Number of Associated Samples	55
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.00 %
% of genes near scaffold ends (potentially truncated)	25.49 %
% of genes from short scaffolds (< 2000 bps)	73.53 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (61.765 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (34.314 % of family members)
Environment Ontology (ENVO)	Unclassified (47.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.35% β-sheet: 0.00% Coil/Unstructured: 33.65%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14520	HHH_5	18.63
PF01869	BcrAD_BadFG	7.84
PF02631	RecX	2.94
PF00474	SSF	1.96
PF11839	Alanine_zipper	1.96
PF02397	Bac_transf	0.98
PF00398	RrnaAD	0.98
PF04972	BON	0.98
PF13189	Cytidylate_kin2	0.98
PF13520	AA_permease_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2137	SOS response regulatory protein OraA/RecX, interacts with RecA	Posttranslational modification, protein turnover, chaperones [O]	2.94
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.98
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.76 %
Unclassified	root	N/A	38.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	48.04 %
Unclassified	root	N/A	38.24 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.59 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	20.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20.59 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	11.76 %
Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.24 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8.82 %
Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10058441	Not Available	2006	Open in IMG/M
3300000567\|JGI12270J11330_10079386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1561	Open in IMG/M
3300004080\|Ga0062385_10519113	Not Available	738	Open in IMG/M
3300004091\|Ga0062387_100071033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1762	Open in IMG/M
3300004603\|Ga0068918_1184118	Not Available	511	Open in IMG/M
3300004609\|Ga0068958_1284638	Not Available	507	Open in IMG/M
3300006354\|Ga0075021_10189970	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300009520\|Ga0116214_1245927	Not Available	679	Open in IMG/M
3300009522\|Ga0116218_1206855	Not Available	885	Open in IMG/M
3300009524\|Ga0116225_1078239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300010339\|Ga0074046_10042768	All Organisms → cellular organisms → Bacteria → Acidobacteria	3037	Open in IMG/M
3300010343\|Ga0074044_10123233	Not Available	1739	Open in IMG/M
3300010379\|Ga0136449_102342249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	772	Open in IMG/M
3300011083\|Ga0138560_1137321	Not Available	506	Open in IMG/M
3300017821\|Ga0187812_1048476	All Organisms → cellular organisms → Bacteria → Acidobacteria	1436	Open in IMG/M
3300017821\|Ga0187812_1096545	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300017822\|Ga0187802_10100296	Not Available	1089	Open in IMG/M
3300017823\|Ga0187818_10022829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2676	Open in IMG/M
3300017823\|Ga0187818_10023549	All Organisms → cellular organisms → Bacteria	2635	Open in IMG/M
3300017823\|Ga0187818_10095376	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1286	Open in IMG/M
3300017823\|Ga0187818_10219675	All Organisms → cellular organisms → Bacteria → Acidobacteria	830	Open in IMG/M
3300017823\|Ga0187818_10420101	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300017823\|Ga0187818_10456212	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300017928\|Ga0187806_1028785	All Organisms → cellular organisms → Bacteria → Acidobacteria	1639	Open in IMG/M
3300017933\|Ga0187801_10387358	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300017934\|Ga0187803_10016854	All Organisms → cellular organisms → Bacteria	2915	Open in IMG/M
3300017939\|Ga0187775_10005101	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300017942\|Ga0187808_10397577	Not Available	630	Open in IMG/M
3300017943\|Ga0187819_10095239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1779	Open in IMG/M
3300017943\|Ga0187819_10310916	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300017943\|Ga0187819_10415539	Not Available	772	Open in IMG/M
3300017943\|Ga0187819_10437200	Not Available	749	Open in IMG/M
3300017955\|Ga0187817_10150835	All Organisms → cellular organisms → Bacteria → Acidobacteria	1478	Open in IMG/M
3300017955\|Ga0187817_10175265	All Organisms → cellular organisms → Bacteria → Acidobacteria	1365	Open in IMG/M
3300017955\|Ga0187817_10308638	All Organisms → cellular organisms → Bacteria → Acidobacteria	1009	Open in IMG/M
3300017959\|Ga0187779_10089952	All Organisms → cellular organisms → Bacteria	1838	Open in IMG/M
3300017961\|Ga0187778_10019417	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4167	Open in IMG/M
3300017961\|Ga0187778_10039502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2883	Open in IMG/M
3300017961\|Ga0187778_10734507	Not Available	669	Open in IMG/M
3300017966\|Ga0187776_10005574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6584	Open in IMG/M
3300017966\|Ga0187776_10006874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6009	Open in IMG/M
3300017966\|Ga0187776_10157910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_70_13	1399	Open in IMG/M
3300017966\|Ga0187776_10214067	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300017966\|Ga0187776_10973356	Not Available	622	Open in IMG/M
3300017970\|Ga0187783_10140333	Not Available	1781	Open in IMG/M
3300017973\|Ga0187780_10092582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2080	Open in IMG/M
3300017973\|Ga0187780_10962764	Not Available	621	Open in IMG/M
3300017973\|Ga0187780_11341607	Not Available	526	Open in IMG/M
3300017974\|Ga0187777_11419311	Not Available	513	Open in IMG/M
3300017999\|Ga0187767_10376127	Not Available	506	Open in IMG/M
3300018001\|Ga0187815_10213445	Not Available	817	Open in IMG/M
3300018001\|Ga0187815_10245098	Not Available	758	Open in IMG/M
3300018006\|Ga0187804_10090967	All Organisms → cellular organisms → Bacteria → Acidobacteria	1243	Open in IMG/M
3300018006\|Ga0187804_10098905	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1197	Open in IMG/M
3300018007\|Ga0187805_10137424	All Organisms → cellular organisms → Bacteria → Acidobacteria	1110	Open in IMG/M
3300018012\|Ga0187810_10126779	Not Available	1015	Open in IMG/M
3300018012\|Ga0187810_10195722	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300018029\|Ga0187787_10239819	Not Available	657	Open in IMG/M
3300018058\|Ga0187766_10373036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300018058\|Ga0187766_10650501	Not Available	724	Open in IMG/M
3300018058\|Ga0187766_10752671	Not Available	677	Open in IMG/M
3300018062\|Ga0187784_10673641	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300018062\|Ga0187784_10927285	Not Available	693	Open in IMG/M
3300018086\|Ga0187769_10033638	Not Available	3498	Open in IMG/M
3300018086\|Ga0187769_10200112	All Organisms → cellular organisms → Bacteria → Acidobacteria	1478	Open in IMG/M
3300018086\|Ga0187769_10678347	Not Available	779	Open in IMG/M
3300018086\|Ga0187769_10989270	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300018088\|Ga0187771_10138329	All Organisms → cellular organisms → Bacteria → Acidobacteria	1993	Open in IMG/M
3300018088\|Ga0187771_10892802	Not Available	754	Open in IMG/M
3300018088\|Ga0187771_11194853	Not Available	645	Open in IMG/M
3300018088\|Ga0187771_11829471	Not Available	516	Open in IMG/M
3300018089\|Ga0187774_10393463	Not Available	840	Open in IMG/M
3300018089\|Ga0187774_10908182	Not Available	606	Open in IMG/M
3300018089\|Ga0187774_11046873	Not Available	573	Open in IMG/M
3300018090\|Ga0187770_10089103	All Organisms → cellular organisms → Bacteria → Acidobacteria	2287	Open in IMG/M
3300018090\|Ga0187770_10302354	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300027497\|Ga0208199_1043874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962	Open in IMG/M
3300027641\|Ga0208827_1033171	All Organisms → cellular organisms → Bacteria → Acidobacteria	1831	Open in IMG/M
3300027696\|Ga0208696_1076471	All Organisms → cellular organisms → Bacteria → Acidobacteria	1134	Open in IMG/M
3300027783\|Ga0209448_10008039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3335	Open in IMG/M
3300027854\|Ga0209517_10063421	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2677	Open in IMG/M
3300030659\|Ga0316363_10025628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3099	Open in IMG/M
3300032160\|Ga0311301_10136083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4529	Open in IMG/M
3300032783\|Ga0335079_10006839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13034	Open in IMG/M
3300032783\|Ga0335079_10021967	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7303	Open in IMG/M
3300032783\|Ga0335079_10062261	All Organisms → cellular organisms → Bacteria	4252	Open in IMG/M
3300032783\|Ga0335079_10265436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1883	Open in IMG/M
3300032783\|Ga0335079_10326734	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300032783\|Ga0335079_10772055	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300032805\|Ga0335078_10246319	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2443	Open in IMG/M
3300032805\|Ga0335078_10536584	Not Available	1493	Open in IMG/M
3300032828\|Ga0335080_10026369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6321	Open in IMG/M
3300032829\|Ga0335070_10041758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5117	Open in IMG/M
3300032829\|Ga0335070_11440345	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300032892\|Ga0335081_10190820	All Organisms → cellular organisms → Bacteria	2852	Open in IMG/M
3300032892\|Ga0335081_10197765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2787	Open in IMG/M
3300032892\|Ga0335081_10478188	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300032893\|Ga0335069_10296185	Not Available	1927	Open in IMG/M
3300033158\|Ga0335077_10497142	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300033158\|Ga0335077_10784863	Not Available	972	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.65%
Aquatic	Environmental → Aquatic	32.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Freshwater	Environmental → Aquatic → Freshwater	31.37%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	52.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	31.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	52.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	28.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	34.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	28.43%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	16.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004603	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004609	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011083	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100584413	3300000567	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN*
JGI12270J11330_100793862	3300000567	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0062385_105191132	3300004080	Bog Forest Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0062387_1000710332	3300004091	Bog Forest Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIKQIESLPDYGLIHYYLPPNRKPN*
Ga0068918_11841181	3300004603	Peatlands Soil	ADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0068958_12846381	3300004609	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPSKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0075021_101899701	3300006354	Watersheds	MRGITDELRLLQSSLQEALLDGSCMGSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMTNGEHLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0116214_12459272	3300009520	Peatlands Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVESVDEFKSVIDQMRQFLWFYLNALSNGEQLIDLLRQAAQTGADPAKTIEQIESLPD
Ga0116218_12068552	3300009522	Peatlands Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0116225_10782392	3300009524	Peatlands Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0074046_100427681	3300010339	Bog Forest Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGAVPSKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0074044_101232332	3300010343	Bog Forest Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0136449_1023422492	3300010379	Peatlands Soil	MRGITDELRLLQRSLQDSLLDGSCMSSDQSVMVEAVDDFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIKQIESLPDYGLIHYYLPPNRKPN*
Ga0138560_11373211	3300011083	Peatlands Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPSKTIEQIESLPDYGLIHYYLPPNRKPN*
Ga0187812_10484762	3300017821	Freshwater Sediment	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187812_10965452	3300017821	Freshwater Sediment	LKETVERMQSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187802_101002961	3300017822	Freshwater Sediment	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187818_100228293	3300017823	Freshwater Sediment	LKEIADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAQSNGEHLIELLRQAAQTGADPAKTIEQIESLPEYGLVHYYLPPNRKPN
Ga0187818_100235491	3300017823	Freshwater Sediment	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLLDYGLIHYYLPPNRKPN
Ga0187818_100953762	3300017823	Freshwater Sediment	MVDHMRSITDELRLLQRSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQMIELLRQAAQNGADPAKTLDQIESLPEYGLIHYYLPPNRKPN
Ga0187818_102196752	3300017823	Freshwater Sediment	LKETVERMHSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187818_104201011	3300017823	Freshwater Sediment	MRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187818_104562121	3300017823	Freshwater Sediment	DHMRSITDELRLLQRSLHEALLDGSCLGSDQSVMVEAVDDFKSVIDQMRQFLWFYLNAMTNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187806_10287852	3300017928	Freshwater Sediment	MRSITDELRLLQRSLQESLLDGSCMGSDQSARAEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187801_103873582	3300017933	Freshwater Sediment	SASAISWAGSGVQGKGTLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARAEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187803_100168544	3300017934	Freshwater Sediment	LKEIADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEHLIELLRQAAQTGADPAKTIEQIESLPEYGLVHYYLPPNRKPN
Ga0187803_102251141	3300017934	Freshwater Sediment	LLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEHLIELLRQAAQTGADTAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187803_102699971	3300017934	Freshwater Sediment	ESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187775_100051013	3300017939	Tropical Peatland	MRSITDELRLLQCSLQESLLDGSCMGSDRSAMADTVDEFKSVVDQMRQFLWFYLNAMSNGEQLIELLRQAAQNGVDPGKAIEQMESLPDYGLVHYYLPPNRKPN
Ga0187808_103975772	3300017942	Freshwater Sediment	MDQMRSITDELRLLQKSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQLIELLRQAAQNGADPAKALDQIESLPEYGLIHYYLPPNRKPN
Ga0187819_100952391	3300017943	Freshwater Sediment	LKETVERMHSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGTDPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187819_103109162	3300017943	Freshwater Sediment	MRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERIESLPEYGLVHYYLPPNRKPN
Ga0187819_104155391	3300017943	Freshwater Sediment	MRSITDELRLLQHSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQYLWFYLNALSNGEQMIELLRQAAQTGADPTKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187819_104372002	3300017943	Freshwater Sediment	MDHMRSITDELRLLQRSLHEALLDGSCLGSDQSVMVEAVDDFKSVIDQMRQFLWFYLNAMANGEQMIELLRQAAQNGADPAKTLDQIESLPEYGLIHYYLPPNRKPN
Ga0187817_101508352	3300017955	Freshwater Sediment	MDHMRSITDELRLLQRSLHEALLDGSCLGSDQSVMVEAVDDFKSVIDQMRQFLWFYLNAMTNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187817_101752651	3300017955	Freshwater Sediment	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIH
Ga0187817_103086381	3300017955	Freshwater Sediment	SITDQLRLLQRSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQLIELLRQAAQNGADPAKALDQIESLPEYGLIHYYLPPNRKPN
Ga0187779_100899522	3300017959	Tropical Peatland	MRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAHTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187778_100194172	3300017961	Tropical Peatland	MHSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPSKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187778_100395023	3300017961	Tropical Peatland	MRGITDELRLLQRSLQESLLDGSCMSSDQSLMVEAVDDFKSVIDQMRQFLWFYLNALANGEQLIELLRQATQNGADARKTLDQIESLPEFGLIHYYLPPNRKPN
Ga0187778_107345071	3300017961	Tropical Peatland	SITDELRFLQRSLHESLLDGSCMGSDQSARTEAVEEFKSVIDQMRQFLWFYLNAISNGEQLIELLRQAAQTGVDPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187776_100055743	3300017966	Tropical Peatland	MRSITDELRLLQRSLQESLLDGSCMASDHSAMAETVDEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQNGVDPGKAIEQMESLPDYGLVHYYLPPNRKPN
Ga0187776_100068744	3300017966	Tropical Peatland	MRSITDELRLLQCSLQESLLDGSCMGSDRSAMADTVDEFKSVVDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPSKAIEQMGSLADYGLVHYYLPPNRKPN
Ga0187776_101579101	3300017966	Tropical Peatland	LRKTTDHMRSITDELRLLQRSLQEALLDGSCMSSDQSVMLEAVDDFKSVLDQMRQYLWFYLNAMTSGEQMIELLRQAAQTGADPAKTIEQIESLPDYGLVHYYLPPNRKPN
Ga0187776_102140672	3300017966	Tropical Peatland	LKETMDQMRGITDELRLLQRCLQEALLDGSCMGSDQPVMVEAVDEFKSVIDQMRQYLWFYLNAMTSGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187776_109733561	3300017966	Tropical Peatland	LKESAEQMRSITDQLRILQRSMQESLLDGSCLGSDQSAMVEALEEFKSVIDQMRQFLWFYLNAITNGEQLIELLRQAARTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187783_101403331	3300017970	Tropical Peatland	LKETVERMQSITDELRLLQRCLQESLLDGSCMGSDQSARTEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLEQIESLPDYGLIHYYLPPNRKPN
Ga0187780_100925823	3300017973	Tropical Peatland	LKDTAEHMHSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPSKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187780_109627641	3300017973	Tropical Peatland	LKETVERMHSITDELRLLQRCLQESLLDGSSMGSDQSARVEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187780_113416072	3300017973	Tropical Peatland	MRSITDELRLLQRSLHESLLDGSCMGSDQSARTEAVEEFKAVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQNGVDPAKTLEQIESLPDYGLIHY
Ga0187777_114193112	3300017974	Tropical Peatland	MRGITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATQNGADARTTLNQIESLPEFGLIHYYLPPNRKP
Ga0187767_103761271	3300017999	Tropical Peatland	MRGITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERIESLPEYGLVHYYLPPNRKPN
Ga0187815_102134451	3300018001	Freshwater Sediment	ITSVTLRPPGPALSYAGFNHCGRGILKEIADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEHLIELLRQAAQTGADPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187815_102450982	3300018001	Freshwater Sediment	LKETVERMHSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLI
Ga0187804_100909672	3300018006	Freshwater Sediment	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAQSNGEHLIELLRQAAQTGADPAKTIEQIESLPEYGLVHYYLPPNRKPN
Ga0187804_100989052	3300018006	Freshwater Sediment	MRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187805_101374242	3300018007	Freshwater Sediment	LKAMVDHMRSITDELRLLQRSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187810_101267792	3300018012	Freshwater Sediment	LKEIADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEHLIELLRQAAQTGADTAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187810_101957221	3300018012	Freshwater Sediment	MRSITDELRLLQRSLHEALLDGSCLGSDQSVMVEAVDDFKSVIDQMRQFLWFYLNAMTNGEQLIELLRQAAQTGADPAKTIEQIE
Ga0187787_102398191	3300018029	Tropical Peatland	TDHMRSITDELRLLQRSLQEALLDGSCMSSDQSVMLEAVDDFKSVLDQMRQYLWFYLNAMTSGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187766_103730362	3300018058	Tropical Peatland	LKETAERMRSITDELRLLQRSLHESLLDGSCMGSDQSARTEAVEEFKAVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQNGVDPAKTLEQIESLPDYGLIHYYLPPNR
Ga0187766_106505011	3300018058	Tropical Peatland	MRGITDELRLLQRLLQESLLDGSCMSSDQSMMMEAVDDFKSVIDQMRQFLWFYLNALASGEQMIDLLRQPAQTGADARKTMEQIESLTDYGFIHYQLPPNRKPN
Ga0187766_107526712	3300018058	Tropical Peatland	LTIQGDSLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAHTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187784_106736411	3300018062	Tropical Peatland	MRGITDELRRLQRSLQESLLDGSCMSSDQSTMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATANGADARKTLDQIESLPEFGLIHYYLPPNRKPN
Ga0187784_109272851	3300018062	Tropical Peatland	MRGITDELRRLQRSLQESLLDGSCMSSDQSTMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATQNGADARTTLNQIESLPEFGLIHYYLPPNRKPN
Ga0187769_100336385	3300018086	Tropical Peatland	MRSITDELRLLQRSLQEALLDGSCMGSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQMIDLLRQAAQNGADPAKTLDQIESLPEYGLIHYQLPPNRKPN
Ga0187769_102001121	3300018086	Tropical Peatland	LKETVEHMRGITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATANGADAKRTLDQIESLPEFGLIHYYLPPNRKPN
Ga0187769_106783471	3300018086	Tropical Peatland	LKETVERMHSITDELRLLQRCLQESLLDGSCMGSDQSARTEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLEQIESLPDY
Ga0187769_109892701	3300018086	Tropical Peatland	LTIQGDTLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERIESLPEYGLVHYYLPPNRKPN
Ga0187771_101383292	3300018088	Tropical Peatland	LKETVERMHSITDELRFLQRSLHESLLDGSCMGSDQSARTEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187771_108928022	3300018088	Tropical Peatland	LKDTAERMRSITDELRLLQRSLQESLLDGSCMGSDQSAMVDSVEEFKSVIDQMRQFLWFYLNAMSNGEHLVELLRQAAQNGIDPAKTIEQIESLPDYGLIHYY
Ga0187771_111948531	3300018088	Tropical Peatland	MRGITDELRLLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQLIELLRQAKQAGADAKKTLDQIESLPEFGLIHYYLPPNRKPN
Ga0187771_118294712	3300018088	Tropical Peatland	LTIQGDTLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARVEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAHTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0187774_103934632	3300018089	Tropical Peatland	MRCITDELRLLQRSLQEALLDGSCMGSDQPVMVEAVDEFKSVIDQMRQYLWFYLNAMTSGEQLIELLRQAAQTGAYPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187774_109081821	3300018089	Tropical Peatland	LKETADHMRGITDELQLLQRALQESLLDGSCMSSDQSSMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0187774_110468731	3300018089	Tropical Peatland	SITDELRLLQRSLQEALLDGSCMSSDQSVMLEAVDDFKSVLDQMRQYLWFYLNAMTSGEQMIELLRQAAQTGADPAKTIEQIESLPDYGLVHYYLPPNRKPN
Ga0187770_100891032	3300018090	Tropical Peatland	LKETVERMHSITDELRLLQRCLQESLLDGSCMGSDQSARVEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0187770_103023543	3300018090	Tropical Peatland	HSITDELRLLQRCLQESLLDGSCMGSDQSARTEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLCQAAQTGADPAKTIEQMEALPDYGLIHYYLPPNRKPN
Ga0208199_10438741	3300027497	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIH
Ga0208827_10331713	3300027641	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0208696_10764711	3300027696	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPD
Ga0209448_100080393	3300027783	Bog Forest Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPSKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0209517_100634212	3300027854	Peatlands Soil	LKETADHMRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0316363_100256285	3300030659	Peatlands Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSVMMEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0311301_101360831	3300032160	Peatlands Soil	DELRLLQRSLQESLLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNALSNGEQLIDLLRQAAQTGADPAKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0335079_100068394	3300032783	Soil	MRGITDELRLLQRSLQESLLDGSCMSSDQSLMVEAVDDFKSVIDQMRQFLWFYLNALANGEQLIELLRQATQNGADARKTLEQIESLPEFGLIHYYLPPNRKPN
Ga0335079_100219673	3300032783	Soil	LKQTVDQMRSITDELRLLQRSLQEALLDGSCMGSDQSVIVEAVDEFKSVIDQMRQFLWFYLNAMSNGEQLIDLLRQAAQTGADPAKTLDQIESLPEYGFIHYYLPPNRKPN
Ga0335079_100622614	3300032783	Soil	MRGITDELRLLQKLLQESLLDGSCMSSDQSMMMEAVDDFKSVIDQMRQFLWFYLNALASGEQMIDLLRQAAQTGADARKTMEQIESLPDYGFVHYQLPPNRKPN
Ga0335079_102654362	3300032783	Soil	MRSITDELRLLQKSLQEALLDGSCMGSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQLIEMLRHAAQNGADPAKAFDRIESLPEYGLIHYYLPPNRKPN
Ga0335079_103267343	3300032783	Soil	MRGITDELRLLQRSLQEALLDGSCMSSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQMIELLRQAAKNGHDPAKTLEQIESLPEYGLIHYYLPPNRKPN
Ga0335079_107720551	3300032783	Soil	ITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATQNGADARTTLNQIESLPEFGLIHYYLPPNRKPN
Ga0335078_102463193	3300032805	Soil	MDQMRGITDDLRLLQRSLQEALLDGSCMGSDQSVMVEAVEEFKSVIDQMRQFLWFYLNAMANGEQVIELLRQAAQNGSDPAKSLDQIESLPEYGLIHYYLPPNRKPN
Ga0335078_105365842	3300032805	Soil	MRGITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATQNGADARTTLNQIESLPEFGLIHYYLPPNRKPN
Ga0335080_100263692	3300032828	Soil	MDQMRSITDELRLLQKSLQEALLDGSCMGSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQLIEMLRHAAQNGADPAKAFDRIESLPEYGLIHYYLPPNRKPN
Ga0335070_100417583	3300032829	Soil	LKETVDRMQSITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLLELLRQAAQAGVDPAKTIEQIESLPEYGLIHYYLPPNRKPN
Ga0335070_114403451	3300032829	Soil	LKETVDRMQNITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQAGVDPARTIEQIESLPEYGLIHYYLPPNRKPN
Ga0335081_101908201	3300032892	Soil	DSLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARAEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGADPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0335081_101977651	3300032892	Soil	MRSITDELRLLQRSLQEALLDGSCMGSDQSVMVEAVDDFKSVIDQMRQFLWFYLNAMTNGEQLIELLRQAAQTGADPTKTIEQIESLPDYGLIHYYLPPNRKPN
Ga0335081_104781883	3300032892	Soil	RAFTATLSLGCLKQTMDQMRSITDELRLLQKSLQEALLDGSCMGSDQSVMVEAVDEFKSVIDQMRQFLWFYLNAMANGEQLIEMLRHAAQNGADPAKAFDRIESLPEYGLIHYYLPPNRKPN
Ga0335069_102961851	3300032893	Soil	LKETVDRMQNITDELRFLQRSLHESLLDGSCMGSDQSARAEAVEEFKSVIDQMRQFLWFYLNAMSNGEQLIELLRQAAQAGVDPARTIEQIESLPEY
Ga0335077_104971422	3300033158	Soil	LTIQGDSLKETADHMRSITDELRLLQRSLQESLLDGSCMGSDQSARAEAVEEFKSAIDQMRQFLWFYLNAMSNGEQLIELLRQAAQTGVDPAKTLERMESLPDYGLVHYYLPPNRKPN
Ga0335077_107848632	3300033158	Soil	LKEAADQMRGITDELRRLQRSLQESLLDGSCMSSDQSSMVEAVDDFKSVIDQMRQFLWFYLNAVANGEQVIELLRQATQNGADARTTLNQIESLPEFGLIHYYLPPNRKPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101287

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences