| Basic Information | |
|---|---|
| Family ID | F101199 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 102 |
| Average Sequence Length | 50 residues |
| Representative Sequence | GFDRMATVVVACPGRSIGLVNHSSNTLTANNDVAGRVGFAAPVRMAA |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 98 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 3.92 % |
| % of genes near scaffold ends (potentially truncated) | 70.59 % |
| % of genes from short scaffolds (< 2000 bps) | 99.02 % |
| Associated GOLD sequencing projects | 86 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.14 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (88.235 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.686 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.451 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (36.275 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.14 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 98 Family Scaffolds |
|---|---|---|
| PF09821 | AAA_assoc_C | 1.02 |
| PF07394 | DUF1501 | 1.02 |
| PF03160 | Calx-beta | 1.02 |
| PF07589 | PEP-CTERM | 1.02 |
| PF02978 | SRP_SPB | 1.02 |
| PF03480 | DctP | 1.02 |
| COG ID | Name | Functional Category | % Frequency in 98 Family Scaffolds |
|---|---|---|---|
| COG0541 | Signal recognition particle GTPase | Intracellular trafficking, secretion, and vesicular transport [U] | 1.02 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 88.24 % |
| All Organisms | root | All Organisms | 11.76 % |
| Visualization |
|---|
| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.69% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 13.73% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 4.90% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 4.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 3.92% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 3.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 3.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.92% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 2.94% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.96% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.96% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 1.96% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.96% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 1.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 1.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.96% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.98% |
| Groundwater | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater | 0.98% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.98% |
| Polar Desert Sand | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand | 0.98% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.98% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.98% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.98% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Sand → Desert → Soil | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.98% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.98% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.98% |
| Enhanced Biological Phosphorus Removal Bioreactor | Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor | 0.98% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.98% |
| Wastewater Sludge | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wastewater Sludge | 0.98% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300003559 | Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_43 (Metagenome Metatranscriptome, Counting Only) | Host-Associated | Open in IMG/M |
| 3300003576 | Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_29 (Metagenome Metatranscriptome, Counting Only) | Host-Associated | Open in IMG/M |
| 3300004104 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004153 | Grasslands soil microbial communities from Hopland, California, USA (version 2) | Environmental | Open in IMG/M |
| 3300004213 | Groundwater microbial communities from aquifer - Crystal Geyser CG19_WC_8/21/14_NA | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300004631 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005187 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 | Environmental | Open in IMG/M |
| 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
| 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
| 3300006417 | Combined Assembly of Gp0110018, Gp0110022, Gp0110020 | Engineered | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009281 | Microbial communities of wastewater sludge from Singapore - Sludge_b1_October | Environmental | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010077 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_8_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010094 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010867 | Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011440 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2 | Environmental | Open in IMG/M |
| 3300012046 | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06) | Environmental | Open in IMG/M |
| 3300012360 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG | Environmental | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014166 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015 | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015200 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2) | Environmental | Open in IMG/M |
| 3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
| 3300018000 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex | Environmental | Open in IMG/M |
| 3300019255 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019263 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019268 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020076 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) | Environmental | Open in IMG/M |
| 3300020202 | Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10 | Environmental | Open in IMG/M |
| 3300020610 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022501 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022502 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022522 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022530 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022531 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022721 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028798 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2 | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030549 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030595 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO083SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030629 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030743 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly | Environmental | Open in IMG/M |
| 3300030762 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030764 | Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030833 | Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030941 | Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030959 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 2A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030969 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030988 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030997 | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031022 | Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2) | Environmental | Open in IMG/M |
| 3300031058 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031093 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031094 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031099 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031505 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031817 | Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Host-Associated | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
| 3300033406 | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI1027J12803_1086871915 | 3300000955 | Soil | MATVKVACPGRTVGLVNHLCKTLTANNSDVTGRVGFGAPAFAMAA* |
| Ga0007427J51700_1164531 | 3300003559 | Avena Fatua Rhizosphere | GAIGFDRMAAVAVACPGRTVGLDNHLCKTLTANTSDVAGRVGFNAPLALAA* |
| Ga0007427J51700_1164532 | 3300003559 | Avena Fatua Rhizosphere | MAAVAVACPGRTVGLDNHLCKTLTANTSDVAGRVGFNAPLALAA* |
| Ga0007413J51701_10006331 | 3300003576 | Avena Fatua Rhizosphere | GFDRMATVVVACPGRSIGLVNHSSNTLTANNDVAGRVGFAAPVRMAA* |
| Ga0058891_15751262 | 3300004104 | Forest Soil | TGATGFDRIIAVAVACPGRSIGLESFEHNLTANSDVAGRVGFAAPVRMAA* |
| Ga0062593_1003899361 | 3300004114 | Soil | QTGAIGFDRMAGVAVACPGRSVGLVNHLSKTLTANTSDVAGRVGFGAPAFAMAA* |
| Ga0062593_1012229641 | 3300004114 | Soil | ATVVVACPGRSIGLVNHSSKTLTANSDVAGRLGFAAPVRMAA* |
| Ga0063455_1011445431 | 3300004153 | Soil | MAAVALACPGRTVGLDNHLCKTLTANTSDVAGRVGFNAPLALAA* |
| Ga0066648_101689222 | 3300004213 | Groundwater | MASVVVACPGRSLGLVKNVSTTLTANNDVAVAGRIGFGAPVRMAV* |
| Ga0062595_1009867621 | 3300004479 | Soil | MAAVAVACPGRTVGLVNHLCKTLTANTSDVAGRVGFNAPLALAA* |
| Ga0062592_1015450571 | 3300004480 | Soil | MATVVVACPGRSIGLVNHSSKTLTANSDVAGRLGFAAPVRMAA* |
| Ga0058899_120942261 | 3300004631 | Forest Soil | GFDRMATVAVACRGRSLASLNIGQFLTANSDVAGRVGFAAPVRMAA* |
| Ga0066675_105289242 | 3300005187 | Soil | MATVTVACPGRTVGLDNHLCKTLTANTSDVAGRIGFNAPLALAV* |
| Ga0070658_109081831 | 3300005327 | Corn Rhizosphere | QGYPDTGAIGFDRMAAVVVAMQGTLTWPLKNVSKTSTANNSDVSGRVGFGAPLAIAA* |
| Ga0070675_1017819091 | 3300005354 | Miscanthus Rhizosphere | MAGVAVACPGRSVGLVNHLSKTLTANTSDVAGRVGFGAPAFAMAA* |
| Ga0070671_1004340502 | 3300005355 | Switchgrass Rhizosphere | MANSDFKGAIGFDRMAAVVVGMQGTLTWPLKNVSKHPANNSDVSGRVGFGAPLAIAA* |
| Ga0070673_1023281901 | 3300005364 | Switchgrass Rhizosphere | LPLFEQFIPRSPGAIGFDRMAAVAVACPGRSVGLVNHLSKTLTANTSDVAGRVGFGAPAFAMAA* |
| Ga0070709_108650672 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | TSLPGATGFDRMATVKAACPGRTVGLVNHLCKTLTANNSDVTGRVGFGAPAFAMAA* |
| Ga0070714_1011716141 | 3300005435 | Agricultural Soil | PPGATGFDRMATVVVACRGRSLASLNTEQNITANSDVAGRVGFAAPVRMAA* |
| Ga0070685_109771751 | 3300005466 | Switchgrass Rhizosphere | GFDRMAAVAVACPGRSVGLVNHLSKTLIANTNDVTGRVGFGAPAFAMAA* |
| Ga0066695_104813572 | 3300005553 | Soil | LITAFRTIPGATGFDRMATVTVACPGRTVGLDNHLCKTLTANTSDVAGRIGFNAPLALAV |
| Ga0068864_1018769212 | 3300005618 | Switchgrass Rhizosphere | MAAVAVACPGRSVGLVNHLSKTLIANTNDVTGRVGFGAPAFAMAA* |
| Ga0068851_102903282 | 3300005834 | Corn Rhizosphere | MYRSPGAIGFDRMATVVVACPGRSIGLVNHSSKTLTANNDVAGRVGFAAPVRMAA* |
| Ga0068858_1023318581 | 3300005842 | Switchgrass Rhizosphere | VACPGRSVGLDNHLSTTLTANSDVAGRVGFNVAPVLAA* |
| Ga0069787_114287101 | 3300006417 | Enhanced Biological Phosphorus Removal Bioreactor | MAAVTVACPGRSLGPVINVSKTSTANNSDVAGRTGFGAAQLAMAA* |
| Ga0066659_113626861 | 3300006797 | Soil | TGAIGFDRMATVTVACPGRTVGLDNHLCKTLTANTSDVAGRIGFNAPLALAA* |
| Ga0075435_1017480032 | 3300007076 | Populus Rhizosphere | MATVVVACPGRSIGLVNHSSKTLTANSDVAGRIGFAAPVRMAA* |
| Ga0103744_101523971 | 3300009281 | Wastewater Sludge | IGFDRMAAVQVACPGCSVGLDNHLSKTLIANNNDVNGRVGFGAATFAMAA* |
| Ga0105238_128407341 | 3300009551 | Corn Rhizosphere | PGAIGFDRMATVVVACPGRSIGLVNHSSNTLTANSDVAGRVGFAAPVRMAA* |
| Ga0127437_1063521 | 3300010077 | Grasslands Soil | TVTVACPGRTVGLVNHLCKTSTANNSDVAGRVGFGAPLAIAA* |
| Ga0127437_1063522 | 3300010077 | Grasslands Soil | MAAVAVACPGRTVGLVNHLCKTLIANTNDVNGRVGFGAPAFAMAA* |
| Ga0127480_10767011 | 3300010094 | Grasslands Soil | GRSLGLVNHVSKTLTANNSDVAGRVGFNAPVFAMAV* |
| Ga0127503_103577332 | 3300010154 | Soil | NPDPHQSLLTRFSGATGFDRMAAVAVACPGRSVGLVNHLSKTLIANNNDVTGRVGFGAPAFAMAA* |
| Ga0126347_13458952 | 3300010867 | Boreal Forest Soil | GFDRMATVAVACRGRSLASLNTEQIITANNDNAVAGRFGFAAPVRMAA* |
| Ga0137433_11469472 | 3300011440 | Soil | MATVVVACPGRSIGLVNHSSKTLTANSDVAGRVGFAAPVRMAA* |
| Ga0136634_105375721 | 3300012046 | Polar Desert Sand | FDRMAAVVVACPGCLVGLVNHPSTTSTANNSDVSGRVGYNVALPMAA* |
| Ga0137375_105755112 | 3300012360 | Vadose Zone Soil | MATVVVACAGRSLGLLKNVSKTSTANNSDVAGRIGYGAPLAMAA* |
| Ga0150984_1085654221 | 3300012469 | Avena Fatua Rhizosphere | GFDRMTTLQVACPGRSLGLVNQVSKTITANSDNAVAGRVGFTAAPVRMAA* |
| Ga0137410_117279512 | 3300012944 | Vadose Zone Soil | MATVTVACPGRTVGLVNHLCKTLIANTNDVAGRVGFNAPVYAMAA* |
| Ga0157378_119032011 | 3300013297 | Miscanthus Rhizosphere | GAIGFDRMATVVVACPGRSIGLVNHSSKTLTANNDVAGRVGFAAPVIMAA* |
| Ga0157372_117088461 | 3300013307 | Corn Rhizosphere | MTGFNWFPRWKQSGAIGFDRMATVAVACPGRTVGLVKSSVQTLTANTSDVAGRVGFNAPVIAMAA* |
| Ga0134079_106695221 | 3300014166 | Grasslands Soil | MAAVVVACPGRSIGLVNHSSKTLTANSDVAGRIGFAAPVRMAA* |
| Ga0182024_120207012 | 3300014501 | Permafrost | MAAMAVACRGRSLASLNIEQTLTANNDVAGRVGFAAPVRMAA* |
| Ga0182024_122797391 | 3300014501 | Permafrost | TPGAIGFDRMATVAVACRGRSLASLNTEQIITANNDNAVAGRFGFAAPVRMAA* |
| Ga0157376_126826122 | 3300014969 | Miscanthus Rhizosphere | SPGAIGFDRMATVVVACPGRSIGLVNHSSKTLTANNDVAGRVGFAAPVRMAA* |
| Ga0173480_110331771 | 3300015200 | Soil | MAAVAVACPGRSVGLVNHLSKTLTANNSDVTGRVGFGAPAFAMAA* |
| Ga0173478_106249451 | 3300015201 | Soil | QFNHNQPDLVRQTGAIGFDRMAGVAVACPGRSVGLVNHLSKTLTANTSDVAGRVGFGAPAFAMAA* |
| Ga0184604_103204951 | 3300018000 | Groundwater Sediment | PQNTGATGFDRMATVRVACPGRSLGLVKNVSKSSTANNSDVNGRVGFNARLALAA |
| Ga0184643_11121841 | 3300019255 | Groundwater Sediment | GFDRIAAVAVACPGRSVGLDNHLSNTLTANTSDVAGRVGFDAPVLAMAA |
| Ga0184647_11063812 | 3300019263 | Groundwater Sediment | DSSGATGFDRMAAVAVACPGRSVGLVNHLSKTLIANNNDVTGRVGFGAPAFAMAA |
| Ga0181514_10175631 | 3300019268 | Peatland | ACPGRSIGLVNHSSTTLTANNDVAGRVGFTAAPVRMAA |
| Ga0206355_11782102 | 3300020076 | Corn, Switchgrass And Miscanthus Rhizosphere | MASVVVACPGRSLGLAKKVSKTLTANDDVAVAGRIGFGAPARMAV |
| Ga0196964_106697171 | 3300020202 | Soil | DRFGGHPGATGFDRMAKLQVACPGRSLGLANHVSKPITANNDVAGRVGFTAAPVRMAA |
| Ga0154015_14757551 | 3300020610 | Corn, Switchgrass And Miscanthus Rhizosphere | TGFDRMASVVVACPGRSLGLAKNVSTTLTANNDVAVAGRIGFGAPVRMAV |
| Ga0126371_114007021 | 3300021560 | Tropical Forest Soil | MAAVVVACPGRSIGLVKNSSKTLTANSDVAGRVGFAAPVRMAA |
| Ga0224712_106791351 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | VVVACPGRSIGLVNHSSNTLTANSDVAGRVGFAAPVRMAA |
| Ga0224712_106791352 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | LGCLGTGVQFPPPPLTPGAIGFDRMATVVVACPGRSIGLVNHSSNTLTANSDVAGRVGFAAPVRM |
| Ga0242645_10211361 | 3300022501 | Soil | PPGAIGFDRMATVAVACRGRSLASLNTEQTITANNDNAVAGRVGFAAPLPMAV |
| Ga0242646_10398391 | 3300022502 | Soil | GFDRMISVKVACLGCTLGPVKNVCKSSTANNSDVAGRVGFGAPAFAMAA |
| Ga0242659_11139441 | 3300022522 | Soil | GFDRIIAVAVACPGRSIGLVNHSSTILTANNDVAGRVGFTAAPVRMAA |
| Ga0242658_12029451 | 3300022530 | Soil | FDRIPAVAVACTGCSIGLLKNSSTITTANTNVAGRIGYQAAPVLMAA |
| Ga0242660_11925623 | 3300022531 | Soil | GFDRMAAVEVACRGRSLASLNTEQTITANNDNAVAGRVGFAAAPLRMAV |
| Ga0242666_11326661 | 3300022721 | Soil | AISCFDLTGATGFDRIIAVAVACPGRSIGLDNHSSKTLTANSDVAGRVGFAAPVRMAA |
| Ga0207643_110226961 | 3300025908 | Miscanthus Rhizosphere | AWSLKTQSPGATGFDRMAAVTVACPGRSVGLVNHLSKTLIANTNDVAGRVGFNAPLAIAA |
| Ga0207669_118657332 | 3300025937 | Miscanthus Rhizosphere | MAAVAVACPGRSVGLVNHLSKTLIANTNDVTGRVGFGAPAFAMAA |
| Ga0302222_104026072 | 3300028798 | Palsa | DRIIAVVVACPGRSIGLVNHSSKILTANNDVAGRVGFTAAPVRMAA |
| Ga0311371_105914891 | 3300029951 | Palsa | VVACPGRSIGLVNHSSKILTANNDVAGRVGFTAAPVRMAA |
| Ga0210257_106879641 | 3300030549 | Soil | GATGFDRMAAVAVACPGRSIGLVKNSSTITTANNTVAGRVGYTAGAVRMAA |
| Ga0210276_107116271 | 3300030595 | Soil | GFDRIIAVAVACPGRSIGLVNHSSTTLTANNDVAGRVGFTAAPVRMAA |
| Ga0210268_12587712 | 3300030629 | Soil | FDRMATVAVACRGRSLASLNTEQPKTANNDNAVAGRIGFAAPLPMAV |
| Ga0265461_127574541 | 3300030743 | Soil | GFDRIVAVAVACPGRSIGLVNHSSKTLTANSDFAGRVGFTATPVLMAA |
| Ga0265461_139080931 | 3300030743 | Soil | LWFDPIELVQFNLTGATGFDRIPAVVVACPGRSIGLVKNSSTITTANNTVAGRIGYNAGPVRMAA |
| Ga0265775_1143802 | 3300030762 | Soil | GFDRMATVAVACRGRSLASLNFEQIITANTNDVAGRFGFNAAAVRMAA |
| Ga0265720_10014681 | 3300030764 | Soil | PGAIGFDRMATVVVACRGRSLASLNTEQTITANNDNAVAGRVGFAAPLPMAA |
| Ga0265736_1011512 | 3300030833 | Soil | VAVACRGRSLASLNFEQNITANTNDVAGRFGFSAAAVRMAA |
| Ga0265737_1050531 | 3300030941 | Soil | MATVAVACRGRSLASLNTEQTITANNDNAVAGRVGFAAPLRMAV |
| Ga0102747_113153341 | 3300030959 | Soil | IGFDRMATVVVACPGRSIGLVNHSSKTLTANNDVAGRVGFAAPVIMAA |
| Ga0075394_119370061 | 3300030969 | Soil | MEQLVQKSGAIGFDRMATVAVACPGRTVGLVKSSVQTLTANTSDVTGRVGFNAPVLAMAA |
| Ga0308183_11603991 | 3300030988 | Soil | LDPLTPGAIGFDRMATVVVACPGRSIGLVNHSSKTLTANSDVAGRVGFAAPVAMAA |
| Ga0308183_11802621 | 3300030988 | Soil | QSCGSSAIQGATGFDRMAALVVACPGCSIGLANHLSKTITAETNNGIAGRVGYKAAAVRMAA |
| Ga0073997_118805071 | 3300030997 | Soil | TGAIGFDRMATVVVACAGRSLGLLKNVSKTSTANTSDVAGRVGFGAPLAIAV |
| Ga0138301_10666551 | 3300031022 | Soil | GATGFDRMAAVAVACPGRSLGLVKNVSKTLTANNSDVAGRVGFNAPVFAMAA |
| Ga0138301_18857911 | 3300031022 | Soil | GAIGFDRMATVAVACPGRTVGLVKSSVQTLTANTSDVAGRVGFNAPVIAMAA |
| Ga0308189_104846201 | 3300031058 | Soil | TGFDRMAAVAVACPGRSVGLVNHLSKTLIANNNDVTGRVGFGAPAFAMAA |
| Ga0308197_104111671 | 3300031093 | Soil | GFDRMAGVAVACPGRSVGLVNHLSKTLTANTSDVAGRVGFGAPAFAMAA |
| Ga0308199_11803961 | 3300031094 | Soil | PALRLASARSGQGATGIDRMAAVAVACPGRSVGLVNHLSKTLIANNNDVTGRVGFGAPAFAMAA |
| Ga0308181_11748631 | 3300031099 | Soil | GFDRMAALVVACPGCSIGLANQLSKTITANTNGIAGRVGFASTVRMAA |
| Ga0170824_1081324231 | 3300031231 | Forest Soil | MATVVVACPGRTVGLDNHLCKTLIANTNDVAGRVGFNAPVFAMAV |
| Ga0170824_1159849022 | 3300031231 | Forest Soil | AVAVACPGRSLGLVKNVSKTLTANNSDVAGRVGFNAPVFAMAA |
| Ga0170820_127140102 | 3300031446 | Forest Soil | VYLVWFTPKALMVHLVQKSGAIGFDRMATVAVACPGRTVGLVKSSVQTLTANTSDVTGRVGFNAPVLAMAA |
| Ga0170818_1057028401 | 3300031474 | Forest Soil | AAVAVACPGRSLGLVKNVSKTLTANNSDVAGRVGFNAPVFAMAA |
| Ga0170818_1107519062 | 3300031474 | Forest Soil | GLDRMTTVKVACPGRTVGLDNHLCKTLIANTNDVAGRVGFNAPVFAMAV |
| Ga0308150_10305791 | 3300031505 | Soil | MAAVAVACPGRSVGLVNHLSKTLIANTNDVAGRVGFNAPVFAMAA |
| Ga0316046_1075621 | 3300031817 | Soil | SVEVACTGRSLGLLKNVSTTLTANNSDVAGRVGFGAPAFAMAA |
| Ga0307409_1012107851 | 3300031995 | Rhizosphere | MAGVAVACPGRSVGLVNHLSKTLTANNSDVTGRVGFNAPAFAMAA |
| Ga0307472_1015877321 | 3300032205 | Hardwood Forest Soil | HLERPPGAIGFDRMAAVAVACPGRSLGLDNHVSKTSTANNSDVAGRVGFNAPLALAA |
| Ga0348332_112724022 | 3300032515 | Plant Litter | GFDRMASVEVACTGRSLGLLKNVSTTLTANNSDVAGRVGFGAPAFAMAA |
| Ga0348332_112770961 | 3300032515 | Plant Litter | GFDRIIAVAVACPGRSIGLVNHSSTTLTANNDVAGRVGFAAPVRMAA |
| Ga0348332_124721161 | 3300032515 | Plant Litter | AIGFDRMATVAVACRGRSLASLNTEQTITANNDNAVAGRFGFAAPVRMAA |
| Ga0348332_124721162 | 3300032515 | Plant Litter | GFDRMATVAVACRGRSLASLNTEQIITANNDNAVAGRFGFAAPVRMAA |
| Ga0348332_144935361 | 3300032515 | Plant Litter | FDRIAAVAVACPGRSLGLVKKSEQTTTANSDVAGRVGFAAPVRMAA |
| Ga0316604_105375542 | 3300033406 | Soil | VELLPPGAIGFDRMAAVQVACPGRSVGLDNHLSKTLIANNNDVNGRVGFGAATFAMAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |