Metagenome / Metatranscriptome Family F101104

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101104
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	64 residues
Representative Sequence	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAM
Number of Associated Samples	92
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.04 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.510 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.44% β-sheet: 0.00% Coil/Unstructured: 76.56%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03401	TctC	77.45
PF01970	TctA	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	77.45
COG1784	TctA family transporter	General function prediction only [R]	0.98
COG3333	TctA family transporter	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.22 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	87.25 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.84 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_101337101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300004157\|Ga0062590_102318440	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005328\|Ga0070676_10092661	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300005332\|Ga0066388_103185873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300005332\|Ga0066388_105439042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300005332\|Ga0066388_105489617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300005339\|Ga0070660_101605069	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005363\|Ga0008090_10070741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300005363\|Ga0008090_10182450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300005468\|Ga0070707_100450616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300005526\|Ga0073909_10286476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300005539\|Ga0068853_101069602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300005548\|Ga0070665_100552616	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300005549\|Ga0070704_101502681	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005564\|Ga0070664_101135098	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005764\|Ga0066903_105751332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300006048\|Ga0075363_100757562	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300006581\|Ga0074048_10017391	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300006604\|Ga0074060_10011602	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300006904\|Ga0075424_100345638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1585	Open in IMG/M
3300006953\|Ga0074063_10090468	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300010046\|Ga0126384_10872237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300010046\|Ga0126384_11148319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300010047\|Ga0126382_10537568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	948	Open in IMG/M
3300010358\|Ga0126370_12479815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300010360\|Ga0126372_12730248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300010371\|Ga0134125_11845166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300010376\|Ga0126381_103880604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300010396\|Ga0134126_13025431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300010398\|Ga0126383_11606769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300010398\|Ga0126383_12423564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300010403\|Ga0134123_13001705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	541	Open in IMG/M
3300010868\|Ga0124844_1002309	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300011106\|Ga0151489_1460302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300012923\|Ga0137359_11130187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300012955\|Ga0164298_10407985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	880	Open in IMG/M
3300012957\|Ga0164303_10176581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300012961\|Ga0164302_11752312	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	522	Open in IMG/M
3300012985\|Ga0164308_10791043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300012988\|Ga0164306_10445164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300013306\|Ga0163162_11493460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300015372\|Ga0132256_102074525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300016294\|Ga0182041_10703321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300016341\|Ga0182035_11172629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300018067\|Ga0184611_1075107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300018073\|Ga0184624_10209893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300018076\|Ga0184609_10143229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1097	Open in IMG/M
3300018083\|Ga0184628_10084106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1626	Open in IMG/M
3300019890\|Ga0193728_1128680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1139	Open in IMG/M
3300019996\|Ga0193693_1027072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300020002\|Ga0193730_1143295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300021344\|Ga0193719_10065429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1578	Open in IMG/M
3300025917\|Ga0207660_10217852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1497	Open in IMG/M
3300025928\|Ga0207700_10094092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2373	Open in IMG/M
3300025981\|Ga0207640_10538080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300027616\|Ga0209106_1122999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300027882\|Ga0209590_11005452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300028707\|Ga0307291_1035655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1175	Open in IMG/M
3300028712\|Ga0307285_10243349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300028771\|Ga0307320_10459284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300028787\|Ga0307323_10027184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1977	Open in IMG/M
3300028787\|Ga0307323_10363839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300028791\|Ga0307290_10190223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300028803\|Ga0307281_10081894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1063	Open in IMG/M
3300028811\|Ga0307292_10054852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1497	Open in IMG/M
3300028811\|Ga0307292_10524962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M
3300028885\|Ga0307304_10536157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300031152\|Ga0307501_10137850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300031198\|Ga0307500_10016035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1572	Open in IMG/M
3300031544\|Ga0318534_10010224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4680	Open in IMG/M
3300031544\|Ga0318534_10520104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300031546\|Ga0318538_10747673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031573\|Ga0310915_10092053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2034	Open in IMG/M
3300031668\|Ga0318542_10114762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1312	Open in IMG/M
3300031713\|Ga0318496_10485808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300031719\|Ga0306917_10255235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1344	Open in IMG/M
3300031719\|Ga0306917_10786341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300031736\|Ga0318501_10122368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1318	Open in IMG/M
3300031763\|Ga0318537_10223651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300031763\|Ga0318537_10248106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M
3300031780\|Ga0318508_1102237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300031797\|Ga0318550_10072638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1586	Open in IMG/M
3300031799\|Ga0318565_10249134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300031805\|Ga0318497_10576062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300031835\|Ga0318517_10555957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300031879\|Ga0306919_10682241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300031897\|Ga0318520_10302027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300031910\|Ga0306923_10237533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2084	Open in IMG/M
3300031946\|Ga0310910_10379034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1119	Open in IMG/M
3300031947\|Ga0310909_11002987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300031954\|Ga0306926_12870633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300031959\|Ga0318530_10299524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300032043\|Ga0318556_10229466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300032052\|Ga0318506_10000545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8258	Open in IMG/M
3300032055\|Ga0318575_10256932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M
3300032060\|Ga0318505_10272680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
3300032063\|Ga0318504_10181406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	978	Open in IMG/M
3300032068\|Ga0318553_10155176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1186	Open in IMG/M
3300032075\|Ga0310890_10291411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300032205\|Ga0307472_102134830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300032261\|Ga0306920_104364692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300033289\|Ga0310914_10405194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1234	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.27%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%
Sediment	Environmental → Aquatic → Sediment	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1013371011	3300004156	Soil	MQQIVRPIVIFLLGVLVGGGLMAAVPPGKAHDDLTGALAAPENHPLLVHMTTAD
Ga0062590_1023184402	3300004157	Soil	MQRIVTFLLGVLIGGALMAAVPAGRAHDDLTGAQAAPENHPLLVHMTTGDSWRGAMGLEFAQAMMKIGHPVA
Ga0070676_100926611	3300005328	Miscanthus Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLMHMTTADSWRGAMGLEFAQAMMKIGH
Ga0066388_1031858731	3300005332	Tropical Forest Soil	MQRIVIFLLGLVLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWR
Ga0066388_1054390422	3300005332	Tropical Forest Soil	MQRIVIFLLGLLLGGGLTALVPPGQAHDDLTGALASPENHPLLLHMTTGDSWRGATGLE
Ga0066388_1054896172	3300005332	Tropical Forest Soil	MQRIVIFLLGLLLGGGLMASVPPGQAHDDLTGALASPENHPLLLHMTTGDSWRGATGLE
Ga0070660_1016050691	3300005339	Corn Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGH
Ga0008090_100707412	3300005363	Tropical Rainforest Soil	MQRIVIFLFGLLLGGGLVASVQPGKAHDDLTGALASPENHPLLLHMTTGESWRGATGLEF
Ga0008090_101824501	3300005363	Tropical Rainforest Soil	MQRIVIFLLGLVLGCGLMASVPPGKAHDDLTSALASPENHPLLLHMTTGESWRGATGLEFARAMLKVG
Ga0070707_1004506161	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQRIVIFLLGLVLGGGLMASVPLGKAHDDLTGALASPENHPLLLHMTTGDSWR
Ga0073909_102864761	3300005526	Surface Soil	MRRVMRRIVIFLLGALAGGGLMASVPSGRAHDDLTGALAAPENHPLLVHMTTADSWR
Ga0068853_1010696022	3300005539	Corn Rhizosphere	MRRIVIFLLGVLVGGGLMAAVPPGKAHDDLTGALAAPENHPLLVHMTTADS
Ga0070665_1005526161	3300005548	Switchgrass Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGHP
Ga0070704_1015026812	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLKVGHPV
Ga0070664_1011350981	3300005564	Corn Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGA
Ga0066903_1057513321	3300005764	Tropical Forest Soil	MQRIVIFLLGLVLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDS
Ga0075363_1007575622	3300006048	Populus Endosphere	MQRIVTFLLGVLIGGALMAAVPAGRAHDDLTGAQAAPENHPLLVHMTTGDSWRGAMGLEFAQA
Ga0074048_100173912	3300006581	Soil	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGHPVAVFL
Ga0074060_100116022	3300006604	Soil	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMG
Ga0075424_1003456381	3300006904	Populus Rhizosphere	MQRIVIFLLGLLLGGGLMASFPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGA
Ga0074063_100904681	3300006953	Soil	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALASPENHPLLVHMTTADSWRGAMGLEFAQAMMKIG
Ga0126384_108722372	3300010046	Tropical Forest Soil	MVIFLLGLLLSGGLTASVPPGKARDDLTGALASPENHPLLLHMTTGDSW
Ga0126384_111483192	3300010046	Tropical Forest Soil	MQRIVIFLLGLLLGGGLTASVPPGQAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLNIGHPVAVFLNL
Ga0126382_105375681	3300010047	Tropical Forest Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLK
Ga0126370_124798152	3300010358	Tropical Forest Soil	MQRIVIFLLGLLLGGGLTASVPPGQAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLKIGHPVAVF
Ga0126372_127302481	3300010360	Tropical Forest Soil	MQRIVIFLLGLLLGGGLTASVPPGQAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEF
Ga0134125_118451661	3300010371	Terrestrial Soil	MQQVVRPIVIFLLGVLVGGGLMAAVPPGKAHDFLSGAPAAPENHPLLVHMTT
Ga0126381_1038806042	3300010376	Tropical Forest Soil	MQRIVIFLLGLVLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGA
Ga0134126_130254311	3300010396	Terrestrial Soil	MQRIVTFLLGVLIGGALMAAVPAGRAHDDLTGAQAAPENHPLLVHMTTGDSW
Ga0126383_116067692	3300010398	Tropical Forest Soil	MQRITIFLLGLLVGGALMVAVPVGRAHDDLTGGLTTPENHPLLVHMTSGDAWRGAN
Ga0126383_124235642	3300010398	Tropical Forest Soil	MCWSEVTPMQRIVIFLLGLLLGGGLTALVPPGQAHDDLTGALASPENHPLLLHMT
Ga0134123_130017052	3300010403	Terrestrial Soil	MRRIVIFLLGALVGGGLMASVPSGSAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGH
Ga0124844_10023091	3300010868	Tropical Forest Soil	MQRIVIFLFGLLLGGGLVASVPPGKAHDDLTGALASPENHPLLLHMTTGGSWRAHDHRGV
Ga0151489_14603021	3300011106	Soil	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGHPVAV
Ga0137359_111301871	3300012923	Vadose Zone Soil	MQRIVIFLLGLVLGGGLMASVPLGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLK
Ga0164298_104079852	3300012955	Soil	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEF
Ga0164303_101765811	3300012957	Soil	MQRIVIFLLGVLVGGGLMAAVPSGKAHDDLTGALAAPANHPLLVHMTTADSWLGAMGLEFAHAMIKIGHPVAVF
Ga0164302_117523122	3300012961	Soil	MRRIVIFLLGVLVGGGLMAAVPPGKAHDDLTGALAAPDNHPLLVHMTTADSWRG
Ga0164308_107910432	3300012985	Soil	MQRIVIFLLGVLVGGGLMAAVPSGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQA
Ga0164306_104451641	3300012988	Soil	MQRIVIFLLGVLVGGGLMAAVPSGKAHDDLTGALAAPANHPLLVHMTTADSWRG
Ga0163162_114934602	3300013306	Switchgrass Rhizosphere	MQRIVIFLLGVLVGGGLMAAVPSGKAHDDLTGALAAPANHPLLVHMTTADSWRGAMGLEFAQAMMKIGH
Ga0132256_1020745252	3300015372	Arabidopsis Rhizosphere	MQRIVIFLLGALVGGALMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRG
Ga0182041_107033211	3300016294	Soil	MQRIVIFLFGLLLGGGLIASIPPGKTHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLK
Ga0182035_111726292	3300016341	Soil	MQRIVIFLLALVLGGGLMGSIPIVKAHDDLTGALVSPENHSLLLHMTTGDSWRGATGL
Ga0184611_10751071	3300018067	Groundwater Sediment	MQRIVIFLLGAFVGGALMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQAILTIGHPVAV
Ga0184624_102098931	3300018073	Groundwater Sediment	MRRIVIFLLGVLVGGSLVAAVPSGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMK
Ga0184609_101432291	3300018076	Groundwater Sediment	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEF
Ga0184628_100841063	3300018083	Groundwater Sediment	MRRVMRRIVIFLLGALAGGGLMASVPSGRAHDDLTGALAAPENHPLLVHMTTADSWRGQR
Ga0193728_11286801	3300019890	Soil	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAEAMLKLG
Ga0193693_10270722	3300019996	Soil	MQRIVIFLLGAFIGGGLMASVPAGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQAMLKIGHPVAV
Ga0193730_11432951	3300020002	Soil	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAEAMLKL
Ga0193719_100654292	3300021344	Soil	MQRIVIFLLGAFIGGGLMASVPAGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQAMLKIGHPVAVFLNLDAVKLALRTG
Ga0207660_102178523	3300025917	Corn Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADS
Ga0207700_100940923	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPGNHPLLVHMTTADSWRGAMGLEF
Ga0207640_105380801	3300025981	Corn Rhizosphere	MRRIVIFLLGVLVGGGLVAAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGATGLEFAQA
Ga0209106_11229992	3300027616	Forest Soil	MQRIVVFLLGLLVGGGLIAAVSRGQAHDDLTGGLRNPQDHPLLLHMTTGDSWRGAMGLEFALAMLKSRHPVAVF
Ga0209590_110054521	3300027882	Vadose Zone Soil	MQRIAIFLLGLLLGISLMAAVPPGRAHDDLTGGLTTPENHPLLLHVTTGDSWRGAMGLEF
Ga0307291_10356551	3300028707	Soil	MRRVMRRIVIFLLGALAGGGLMASVPSGRAHDDLTGALAAPENHPLLVHMTTADSWRGALGLEF
Ga0307285_102433492	3300028712	Soil	MRRIVIFLLGVLVGGSLVAAVPSGKAHDDLTGALAAPENHPLLVHMTTA
Ga0307320_104592841	3300028771	Soil	MQRIIIFLLGVLVGGALMAAVPPGKAHDDLTGALAAPANHPLLVHITTADSWRGAMGL
Ga0307323_100271843	3300028787	Soil	MRRVMRRIVIFLLGALAGGGLMASVPSGRAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMLKIGHPVA
Ga0307323_103638391	3300028787	Soil	MQRIVVFLLGLLVGGGLIAAVSGGQAHDDLTGGLRNPQDHPLLLHMTTGDSWRGAMGLEFAQAMV
Ga0307290_101902232	3300028791	Soil	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADT
Ga0307281_100818942	3300028803	Soil	MQRIVIFLLGAFVGGALMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQAMLKIGHPVAVFL
Ga0307292_100548522	3300028811	Soil	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQAMLKIGHPVAVFLNLDAVKLALRTGE
Ga0307292_105249621	3300028811	Soil	MQRIVIFLLGAFIGGGLMASVPAGKAHDDLTGALAAPENHPLLVHMTSADTWR
Ga0307304_105361572	3300028885	Soil	MQRIVIFLLGAFVGGGLMASVPSGKAHDDLTGALAAPENHPLLVHMTSADTWRGAMGLEFAQA
Ga0307501_101378502	3300031152	Soil	MRRIVIFLLGVLVGGGLVTAVPPGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIGHPV
Ga0307500_100160351	3300031198	Soil	MRRIVIFLLGVLVGGSLVAAVPSGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGL
Ga0318534_100102245	3300031544	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAML
Ga0318534_105201042	3300031544	Soil	MQRIVIFLLALVLGGGLMGSIPIVKAHDDLTGALVSPENHPLLLHMTTGDSWRGATGLEF
Ga0318538_107476732	3300031546	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARAMLKLGHPVACFSILTRSGSR
Ga0310915_100920531	3300031573	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDITGALASPENHPLLLHMTTGESWRGA
Ga0318542_101147621	3300031668	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDITGALASPENHPLLLHMTTGESWRGATGLEFARAMLKIGH
Ga0318496_104858082	3300031713	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARAMLKLGHPVAVFLNL
Ga0306917_102552352	3300031719	Soil	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAM
Ga0306917_107863412	3300031719	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDITGALASPENHPLLLHMTTGESWRGAT
Ga0318501_101223681	3300031736	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGATGLEFARAMLKIGHPV
Ga0318537_102236511	3300031763	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRG
Ga0318537_102481061	3300031763	Soil	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSW
Ga0318508_11022371	3300031780	Soil	MQRIVIFLLALVLGGGLMGSIPIVKAHDDLTGALVSPENHSLLLHMTTGDSWRGATGLEFARAMLKIGHPVAV
Ga0318550_100726381	3300031797	Soil	MQRIVIFLFGLLPGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRG
Ga0318565_102491342	3300031799	Soil	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGA
Ga0318497_105760621	3300031805	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARAMLKLGHPVACFSILTRSGSRSARASRR
Ga0318517_105559572	3300031835	Soil	MQRIIIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLK
Ga0306919_106822412	3300031879	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDITGALASPENHPLLLHMTTGESWRGATGLEFARAMLKIGHPV
Ga0318520_103020272	3300031897	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARAMLKLGHPVACFSILT
Ga0306923_102375333	3300031910	Soil	MQRIVIFLFGLLPGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGATGLEFARAMLKIGHPV
Ga0310910_103790341	3300031946	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDITGALASPENHPLLLHMTTGESWRGATGLEFARAM
Ga0310909_110029872	3300031947	Soil	MQRIVIFLFGLLLGGGLIASIPPGKTHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLKIGHPVAVFL
Ga0306926_128706332	3300031954	Soil	MQRIVIFLFGLLLGGGLIASIPPGKTHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLKIGHPVA
Ga0318530_102995241	3300031959	Soil	MQRIVIFLLALVLGGGLMGSIPIVKAHDDLTGALVSPENHPLLLHMTTGDSWRGATGLEFARAML
Ga0318556_102294661	3300032043	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEF
Ga0318506_100005451	3300032052	Soil	MQRIVIFLFGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLEFARAMLKIGHPV
Ga0318575_102569321	3300032055	Soil	MQRIVIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGATGLEFARAMLKVGHPVAVFLN
Ga0318505_102726801	3300032060	Soil	MQRIVIFLFGLLPGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGA
Ga0318504_101814061	3300032063	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARA
Ga0318553_101551762	3300032068	Soil	MQRIVIFLLGLVLGGGLMASAPLGKAHDDLTGALASPENHPLLLHMTMGDSWRGATGLEFARAMLKLGHPVAVFLNLD
Ga0310890_102914112	3300032075	Soil	MRRIVIFLLGVLVGGSLVAAVPSGKAHDDLTGALAAPENHPLLVHMTTADSWRGAMGLEFAQAMMKIG
Ga0307472_1021348302	3300032205	Hardwood Forest Soil	MQRIVIFLLGLLLGGGLMASFPPGKAHDDLTGALASPENHPLLLHMTTGDSWRGATGLELARAMLKVGH
Ga0306920_1043646922	3300032261	Soil	MQRIVIFLFGLLLGGGLIASIPPGKTHDDLTGALASPENHPLLLHMTTGDSWR
Ga0310914_104051942	3300033289	Soil	MQRIIIFLLGLLLGGGLMASVPPGKAHDDLTGALASPENHPLLLHMTTGESWRGATGLEFARAMLKVGHPVAVFLNLDAVRLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101104

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences