Metagenome / Metatranscriptome Family F100907

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100907
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNQTPHCE
Number of Associated Samples	76
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	34.31 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.588 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.118 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.37% β-sheet: 0.00% Coil/Unstructured: 61.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13505	OMP_b-brl	24.51
PF07332	Phage_holin_3_6	8.82
PF12277	DUF3618	4.90
PF00691	OmpA	2.94
PF13401	AAA_22	1.96
PF02922	CBM_48	0.98
PF07437	YfaZ	0.98
PF00483	NTP_transferase	0.98
PF01442	Apolipoprotein	0.98
PF13493	DUF4118	0.98
PF02518	HATPase_c	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	98.04 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	83.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	58.82 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	22.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	58.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	22.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	58.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	22.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0361755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	502	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0832237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1396	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0833403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3256	Open in IMG/M
3300000956\|JGI10216J12902_107141535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1448	Open in IMG/M
3300000956\|JGI10216J12902_120759476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	577	Open in IMG/M
3300004156\|Ga0062589_100603052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	953	Open in IMG/M
3300004157\|Ga0062590_101340362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	708	Open in IMG/M
3300004463\|Ga0063356_101105640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1142	Open in IMG/M
3300005093\|Ga0062594_102241662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	592	Open in IMG/M
3300005295\|Ga0065707_10586486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	698	Open in IMG/M
3300005336\|Ga0070680_100064078	All Organisms → cellular organisms → Bacteria → Proteobacteria	3012	Open in IMG/M
3300005347\|Ga0070668_100867202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	805	Open in IMG/M
3300005354\|Ga0070675_100543762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1050	Open in IMG/M
3300005354\|Ga0070675_102202387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	508	Open in IMG/M
3300005365\|Ga0070688_101226935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	603	Open in IMG/M
3300005406\|Ga0070703_10041557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1434	Open in IMG/M
3300005444\|Ga0070694_100015047	All Organisms → cellular organisms → Bacteria → Proteobacteria	4849	Open in IMG/M
3300005444\|Ga0070694_101625259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	549	Open in IMG/M
3300005545\|Ga0070695_100146508	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300005549\|Ga0070704_101972102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	542	Open in IMG/M
3300005713\|Ga0066905_101737297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	574	Open in IMG/M
3300005719\|Ga0068861_100934529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	824	Open in IMG/M
3300006046\|Ga0066652_100921728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	833	Open in IMG/M
3300006755\|Ga0079222_10973324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	725	Open in IMG/M
3300006844\|Ga0075428_100000272	All Organisms → cellular organisms → Bacteria → Proteobacteria	51381	Open in IMG/M
3300006844\|Ga0075428_101228865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	789	Open in IMG/M
3300006846\|Ga0075430_100770439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	793	Open in IMG/M
3300006854\|Ga0075425_100385117	All Organisms → cellular organisms → Bacteria → Proteobacteria	1615	Open in IMG/M
3300007004\|Ga0079218_10063774	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300007004\|Ga0079218_11249238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	776	Open in IMG/M
3300007004\|Ga0079218_11549790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	722	Open in IMG/M
3300007004\|Ga0079218_12211612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	639	Open in IMG/M
3300007004\|Ga0079218_12353331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	625	Open in IMG/M
3300007076\|Ga0075435_101379851	Not Available	617	Open in IMG/M
3300009078\|Ga0105106_11249063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	527	Open in IMG/M
3300009087\|Ga0105107_10066368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2548	Open in IMG/M
3300009094\|Ga0111539_11244904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	864	Open in IMG/M
3300009156\|Ga0111538_13688038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	531	Open in IMG/M
3300010399\|Ga0134127_10082003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2773	Open in IMG/M
3300011332\|Ga0126317_11016712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	792	Open in IMG/M
3300011333\|Ga0127502_10088308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	591	Open in IMG/M
3300011333\|Ga0127502_10599391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2327	Open in IMG/M
3300012896\|Ga0157303_10062418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	802	Open in IMG/M
3300012901\|Ga0157288_10073272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	864	Open in IMG/M
3300012909\|Ga0157290_10136659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	770	Open in IMG/M
3300012943\|Ga0164241_10506816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	869	Open in IMG/M
3300014326\|Ga0157380_10004310	All Organisms → cellular organisms → Bacteria → Proteobacteria	9864	Open in IMG/M
3300015371\|Ga0132258_10077660	All Organisms → cellular organisms → Bacteria → Proteobacteria	7730	Open in IMG/M
3300015371\|Ga0132258_11540800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1678	Open in IMG/M
3300015372\|Ga0132256_100739073	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300018422\|Ga0190265_10069945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3163	Open in IMG/M
3300018422\|Ga0190265_10381157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1504	Open in IMG/M
3300018422\|Ga0190265_11657948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	750	Open in IMG/M
3300018469\|Ga0190270_10886354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	908	Open in IMG/M
3300018469\|Ga0190270_11478055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	728	Open in IMG/M
3300018481\|Ga0190271_11024647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	950	Open in IMG/M
3300018481\|Ga0190271_12644271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	602	Open in IMG/M
3300019356\|Ga0173481_10004894	All Organisms → cellular organisms → Bacteria → Proteobacteria	3544	Open in IMG/M
3300019377\|Ga0190264_12293035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	506	Open in IMG/M
3300025885\|Ga0207653_10068177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1212	Open in IMG/M
3300025912\|Ga0207707_11606672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	512	Open in IMG/M
3300025917\|Ga0207660_10173582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1670	Open in IMG/M
3300025917\|Ga0207660_10434383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1060	Open in IMG/M
3300025942\|Ga0207689_10149470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1925	Open in IMG/M
3300026075\|Ga0207708_10139450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1901	Open in IMG/M
3300026089\|Ga0207648_10372045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1291	Open in IMG/M
3300026118\|Ga0207675_101990728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	599	Open in IMG/M
3300027695\|Ga0209966_1150172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	542	Open in IMG/M
3300027876\|Ga0209974_10009140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3367	Open in IMG/M
3300027876\|Ga0209974_10252318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	664	Open in IMG/M
3300027886\|Ga0209486_10008865	All Organisms → cellular organisms → Bacteria → Proteobacteria	4457	Open in IMG/M
3300027886\|Ga0209486_11094439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	541	Open in IMG/M
3300027907\|Ga0207428_10011981	All Organisms → cellular organisms → Bacteria → Proteobacteria	7632	Open in IMG/M
3300028380\|Ga0268265_10424112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1236	Open in IMG/M
3300028587\|Ga0247828_10313317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	871	Open in IMG/M
3300028812\|Ga0247825_10061309	All Organisms → cellular organisms → Bacteria → Proteobacteria	2508	Open in IMG/M
3300031226\|Ga0307497_10159395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	944	Open in IMG/M
3300031538\|Ga0310888_10171235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1174	Open in IMG/M
3300031538\|Ga0310888_10288528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	934	Open in IMG/M
3300031548\|Ga0307408_101126977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	729	Open in IMG/M
3300031548\|Ga0307408_101315347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	678	Open in IMG/M
3300031548\|Ga0307408_102099944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	545	Open in IMG/M
3300031562\|Ga0310886_11097513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	513	Open in IMG/M
3300031731\|Ga0307405_10937556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	735	Open in IMG/M
3300031824\|Ga0307413_10248537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1318	Open in IMG/M
3300031852\|Ga0307410_11260625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	645	Open in IMG/M
3300031854\|Ga0310904_11202234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	546	Open in IMG/M
3300031911\|Ga0307412_10285866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1297	Open in IMG/M
3300031995\|Ga0307409_102417973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	554	Open in IMG/M
3300032005\|Ga0307411_11093977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	718	Open in IMG/M
3300032012\|Ga0310902_10626238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	717	Open in IMG/M
3300032013\|Ga0310906_10958385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	613	Open in IMG/M
3300032126\|Ga0307415_100227363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1500	Open in IMG/M
3300032144\|Ga0315910_10006744	All Organisms → cellular organisms → Bacteria → Proteobacteria	9216	Open in IMG/M
3300032144\|Ga0315910_10065709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2640	Open in IMG/M
3300032144\|Ga0315910_10381223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1078	Open in IMG/M
3300032144\|Ga0315910_10551814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	891	Open in IMG/M
3300032144\|Ga0315910_10578919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	869	Open in IMG/M
3300032144\|Ga0315910_10824787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	722	Open in IMG/M
3300032157\|Ga0315912_10977529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	672	Open in IMG/M
3300032179\|Ga0310889_10576044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	578	Open in IMG/M
3300033551\|Ga0247830_11611308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.67%
Host-Associated	Host-Associated	33.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.76%
Plants	Host-Associated → Plants	33.33%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.78%
Freshwater	Environmental → Aquatic → Freshwater	4.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.63%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_03617551	2228664021	Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLQIMLAPQLQLVWPPREFNQAPHCE
ICChiseqgaiiDRAFT_08322373	3300000033	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPXVXLVWPPRDFNRTPHCE*
ICChiseqgaiiDRAFT_08334034	3300000033	Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLQIMLAPQVQLVWPPREFNQAPHCE*
JGI10216J12902_1071415352	3300000956	Soil	MTMTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLEIMLAPEVRLVWPRRGVDSSPRGD
JGI10216J12902_1207594761	3300000956	Soil	MTQPTDRLCVLADSLPGAIRWRFCDYEQLLKKQLQILLAPPVRLVQPDGQDRYTH*
Ga0062589_1006030522	3300004156	Soil	MTQRHDRLCPLANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE*
Ga0062590_1013403622	3300004157	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE*
Ga0063356_1011056402	3300004463	Arabidopsis Thaliana Rhizosphere	MTITQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLEIMLAPEVKLVWPPRGVDPSPRCD
Ga0062594_1022416621	3300005093	Soil	ARVRHTLGGLKMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE*
Ga0065707_105864861	3300005295	Switchgrass Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNEAPYCE*
Ga0070680_1000640782	3300005336	Corn Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE*
Ga0070668_1008672022	3300005347	Switchgrass Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRHFNQTPHCE
Ga0070675_1005437621	3300005354	Miscanthus Rhizosphere	VPSTSRPTRGTRMTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE*
Ga0070675_1022023871	3300005354	Miscanthus Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPR
Ga0070688_1012269352	3300005365	Switchgrass Rhizosphere	GASEPNPLPTHTRGTQMMQPQGRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE*
Ga0070703_100415572	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE*
Ga0070694_1000150471	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	TATSAPTPIRGDEKMMQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPYGE*
Ga0070694_1016252592	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFEQAPPGE*
Ga0070695_1001465082	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MMQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPYGE*
Ga0070704_1019721022	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE*
Ga0066905_1017372971	3300005713	Tropical Forest Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLRIMLAPQVRLVWPPRDFNQTPHCE*
Ga0068861_1009345291	3300005719	Switchgrass Rhizosphere	TLGGLKMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE*
Ga0066652_1009217281	3300006046	Soil	MTQRNDRLCALANSLPAAIRWRYCDYEQLLKKQLQIMLAPQVWPAPPRRGVDEPPCE*
Ga0079222_109733242	3300006755	Agricultural Soil	MTKRHEHLCALANSLPAAIRWRYCDYEQLLKKQLAIMLAPEARLVWPPRDFGQTPHCE*
Ga0075428_10000027234	3300006844	Populus Rhizosphere	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNQTPHCE*
Ga0075428_1012288652	3300006844	Populus Rhizosphere	MTQRHDSLCALADSLPAAIRWRYCDYEQLLKKQLRIMLAPQVRLVWPPRDFNQTPHCE*
Ga0075430_1007704393	3300006846	Populus Rhizosphere	MTQRHDSLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFN
Ga0075425_1003851171	3300006854	Populus Rhizosphere	MTQRHDNLCVLANSLPAAIRWRYSDYEQLLKKQLQIMLAPQVRLAWPPRVFEQTPPYGE*
Ga0079218_100637742	3300007004	Agricultural Soil	MTQRHDRLCALADSLPAAIRWRYSDYEQLLKKQLQILLAPQVRLVWPPRGFDEAPSGD*
Ga0079218_112492381	3300007004	Agricultural Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLQILLAPRLRLVSPPSGG
Ga0079218_115497901	3300007004	Agricultural Soil	DRLCALADSLPAAIRWRYCDYEQLLKKQLRIMLAPQVRLVWPPRDFSQTPHCE*
Ga0079218_122116123	3300007004	Agricultural Soil	MIQPNDRLCVLADSLPGAIRWRFCDYEQLLKKQLQILLAPSVRLAQSPPDAHDRSTH*
Ga0079218_123533312	3300007004	Agricultural Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLQIMLAPPLRLVSPSSGDERPVSSD*
Ga0075435_1013798511	3300007076	Populus Rhizosphere	VLANSLPAAIRWRYSDYEQLLKKQLQIMLAPQVRLAWPPRVFEQTPPYGE*
Ga0105106_112490632	3300009078	Freshwater Sediment	MTEPHDRLCVLADSLPAAIRWRFCDYEQILRKQLQILAPPLRLVWPPADAEDLPTE*
Ga0105107_100663682	3300009087	Freshwater Sediment	MMTQRHDRLCALADSPSAAIRWRYCDYEQLLKKQLRILLAAPVRSVGPPPNGSGPPASFN
Ga0111539_112449042	3300009094	Populus Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFDQAPPGE*
Ga0111538_136880382	3300009156	Populus Rhizosphere	MMQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPY
Ga0134127_100820035	3300010399	Terrestrial Soil	LCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFEQAPPGE*
Ga0126317_110167122	3300011332	Soil	MTQRHDRLCALADSLPAAIRWRYSDYEQMLKKQLQIMAAPQVQLVWPRRGFEPAPPGE*
Ga0127502_100883081	3300011333	Soil	AGARRFSRGNPMTMTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLAIMLAPEVELVWPPRGDSAPRSD*
Ga0127502_105993911	3300011333	Soil	MTMTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLEILLAPEVKLVWPPRSVDSSPRGD
Ga0157303_100624182	3300012896	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRHFNQTPHCE*
Ga0157288_100732722	3300012901	Soil	MTQRHDRLCALANSLSAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE*
Ga0157290_101366592	3300012909	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPEAQLVWPPRD
Ga0164241_105068162	3300012943	Soil	MTQRHANLCALADSLPAAIRWRYCDYEQLLKKQIEILLAPAVRQVWPPRDAEQGPPS*
Ga0157380_100043106	3300014326	Switchgrass Rhizosphere	MTESHDRLCVLADSLPGAIRWRFCDYEQLLKKQLQLLASPSQVVRPLRGHDDRGPAAQRF
Ga0132258_100776602	3300015371	Arabidopsis Rhizosphere	MTQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPYGE*
Ga0132258_115408002	3300015371	Arabidopsis Rhizosphere	MTQRNDRLCALADSLPAAIRWRYCDYEQLLKKQLQIMLAPQVWLVPPPRGVDEPPC*
Ga0132256_1007390732	3300015372	Arabidopsis Rhizosphere	MTQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPWGE*
Ga0190265_100699452	3300018422	Soil	VTEPHDRLCVLADSLPAAIRWRFCDYEQLLKKQLQILAPPLRLVWPPRDAETLPTE
Ga0190265_103811572	3300018422	Soil	MTQRHDRLCVLADSLPAAIRWRYCDYEQLLKKQLQILLAPPVKLIWPPAGGDEPPAT
Ga0190265_116579481	3300018422	Soil	MSESHDRLCVLADSLPGAIRWRFCDYEQLLKKQLQILAPPLRLVWPKPDAEDLSTD
Ga0190270_108863541	3300018469	Soil	ESHDRLCVLADSLPGAIRWRFCDYEQLLKKQLQLLASPSQVVRPLRHDDRGPSARRF
Ga0190270_114780552	3300018469	Soil	MTQRQDRLCALADSLPAAIRWRYCDYEQLLRKQLQIMLAPEVRLVWPPRNFEPRP
Ga0190271_110246472	3300018481	Soil	MTESHDRLCVLADSLPGAIRWRFCDYKQLLKKQLQLLASPSLVVRPLRVHDDRGPSAQRF
Ga0190271_126442712	3300018481	Soil	MTESHDRLCVLADSLPGAIRWRFCDYEQLLKKQLQLLASPSQVVRPLRDHDDRGPSARRF
Ga0173481_100048945	3300019356	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE
Ga0190264_122930353	3300019377	Soil	GLPMIQPNDRLCVLADSLPGAIRWRFCDYEQLLKKQLQILLAPPVRPVQRPCDAQDRSTH
Ga0207653_100681773	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE
Ga0207707_116066722	3300025912	Corn Rhizosphere	PTRGTCMTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRHFNQTPHCE
Ga0207660_101735824	3300025917	Corn Rhizosphere	RPPNRARIRRTLGGLKMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE
Ga0207660_104343831	3300025917	Corn Rhizosphere	RARIRHTLGGIRMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE
Ga0207689_101494701	3300025942	Miscanthus Rhizosphere	RHTLGGIRMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE
Ga0207708_101394501	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	PQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE
Ga0207648_103720452	3300026089	Miscanthus Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFDQAPPCE
Ga0207675_1019907282	3300026118	Switchgrass Rhizosphere	QPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLAPPVRLAWPPRGFEQAPPCE
Ga0209966_11501722	3300027695	Arabidopsis Thaliana Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFEQAPPGE
Ga0209974_100091405	3300027876	Arabidopsis Thaliana Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPEVQLVWPPRDFNQTPHCE
Ga0209974_102523182	3300027876	Arabidopsis Thaliana Rhizosphere	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFEQAP
Ga0209486_100088654	3300027886	Agricultural Soil	MTQRHDRLCALADSLPAAIRWRYSDYEQLLKKQLQILLAPQVRLVWPPRGFDEAPSGD
Ga0209486_110944392	3300027886	Agricultural Soil	MTMTQRHDRLCALADSLPAAIRWRYSDYEHLLKKQLEIMLAPEVKLVWPPRGVDAPPRCD
Ga0207428_100119814	3300027907	Populus Rhizosphere	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNQTPHCE
Ga0268265_104241122	3300028380	Switchgrass Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNE
Ga0247828_103133172	3300028587	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNEAPYCE
Ga0247825_100613092	3300028812	Soil	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKVMLAPQVRLVWPPRDFNQTPHCE
Ga0307497_101593952	3300031226	Soil	MMQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPYRE
Ga0310888_101712352	3300031538	Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFSQTPHCE
Ga0310888_102885281	3300031538	Soil	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFEQVPPGE
Ga0307408_1011269772	3300031548	Rhizosphere	MTEPDDRLCVLADSLPAAIRWRFCDYEQLLRKQLQLLAPPLRLVQPRRDAKELQTK
Ga0307408_1013153472	3300031548	Rhizosphere	MTEPNDRLCVLADSLPAAIRWRFCDYEQLLRKQLQLLAPPLRLVRPPRDAKELQTK
Ga0307408_1020999441	3300031548	Rhizosphere	TMTQPHDRLCVLADSLPGAIRWRFCDYEHLLKKQLKILLAPPLRAVRPSRGAGDLPSA
Ga0310886_110975131	3300031562	Soil	GTQMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPQRGFEQAPPG
Ga0307405_109375562	3300031731	Rhizosphere	MTQPHDRLCVLADSLPGAIRWRFCDYEHLLKKQLKILLAPPLRAVRPSRGAGDLPSA
Ga0307413_102485372	3300031824	Rhizosphere	MTEPNDRLCVLADSLPAAIRWRFCDYEQLLRKQLQLLAPPLRLVQPRRDAKELQTK
Ga0307410_112606251	3300031852	Rhizosphere	TEPDDRLCVLADSLPAAIRWRFCDYEQLLRKQLQLLAPPLRLVRPPRDAKELQTK
Ga0310904_112022341	3300031854	Soil	SEPNPLPTHTRGTQMTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFDQAPPCE
Ga0307412_102858662	3300031911	Rhizosphere	MTQPHDRLCVLADSLPGAIRWRFCDYEHLLKKQLKILLAPPLRAVRPSRGAGDLPNA
Ga0307409_1024179732	3300031995	Rhizosphere	LCVLADSLPAAIRWRFCDYEQLLRKQLQLLAPPLRLVRPPRDAKELQTK
Ga0307411_110939771	3300032005	Rhizosphere	MTQRHDRLCALANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQ
Ga0310902_106262382	3300032012	Soil	MTQPQDRLCALADSLPATIRWRYCDYEQLLKKQLQIMLATPVRLAWPPRGFE
Ga0310906_109583851	3300032013	Soil	MMQRHDNLCVLADSLPAAIRWRYSDYEQLLKKQLQIMLAPEMRLVWPPRVFEQTPPYGE
Ga0307415_1002273633	3300032126	Rhizosphere	MTQPHDRLCVLADSLPGAIRWRFCDYEHLLKKQLKILLAPPLRAVRPSRGA
Ga0315910_100067445	3300032144	Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFDQAPNCE
Ga0315910_100657094	3300032144	Soil	MTQRHDRLCALADSLPAVIRWRYCDYEQLLKKQLQILLAPPLRIVSPPSGGEPPISSD
Ga0315910_103812232	3300032144	Soil	MTQRHGNLCALADSLPAAIRWRYCDYEQLLKKQIEILLAPPARQVWPRRDGERGSSASG
Ga0315910_105518141	3300032144	Soil	MTQRHDHLCALADSLPGAIRWRYCDYEQLLKKQLQLMLAPEVQLVWPQRGGIPPRYDRN
Ga0315910_105789191	3300032144	Soil	MTQPHDRLCALADSLPAAIRWRYSDYEQLFRKQLAIMLRPDVHLVRPPRAAEQAPPRH
Ga0315910_108247871	3300032144	Soil	GGLRMTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLKIMLAPQVRLVWPPRDFNQTPHCE
Ga0315912_109775291	3300032157	Soil	MTQRHDRLCALADSLPAAIRWRYCDYEQLLKKQLQIMLAPQVQLVWPPREFNQAPHCE
Ga0310889_105760441	3300032179	Soil	MTQRHDRLCPLANSLPAAIRWRYCDYEQLLKKQLKIMLAPQVQLVWPPRDFNQTPHCE
Ga0247830_116113082	3300033551	Soil	MTESHDRLCVLADSLPGAIRWRFCDYEQLLKKQLQLLASSSQVVRPLREHRDRGPSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100907

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences